View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4595_low_11 (Length: 283)

Name: NF4595_low_11
Description: NF4595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4595_low_11
NF4595_low_11
[»] chr3 (8 HSPs)
chr3 (194-283)||(34651497-34651586)
chr3 (59-143)||(34649728-34649812)
chr3 (19-55)||(2134945-2134981)
chr3 (14-54)||(42636557-42636597)
chr3 (14-55)||(21221529-21221570)
chr3 (14-55)||(29584750-29584791)
chr3 (19-55)||(40083196-40083232)
chr3 (19-55)||(47958606-47958642)
[»] chr2 (10 HSPs)
chr2 (11-55)||(37004041-37004085)
chr2 (11-55)||(30798659-30798703)
chr2 (14-55)||(2085946-2085987)
chr2 (14-55)||(4641390-4641431)
chr2 (14-55)||(9717115-9717156)
chr2 (14-55)||(18685710-18685751)
chr2 (14-55)||(35114659-35114700)
chr2 (14-55)||(44284511-44284552)
chr2 (11-55)||(17540588-17540632)
chr2 (19-55)||(33366484-33366520)
[»] chr4 (12 HSPs)
chr4 (14-55)||(43640976-43641017)
chr4 (11-55)||(49152264-49152308)
chr4 (14-55)||(12600763-12600804)
chr4 (14-55)||(23521757-23521798)
chr4 (14-55)||(24002215-24002256)
chr4 (14-55)||(33552995-33553036)
chr4 (14-55)||(36885823-36885864)
chr4 (14-55)||(42869859-42869900)
chr4 (19-55)||(2725290-2725326)
chr4 (11-55)||(21579903-21579947)
chr4 (16-52)||(28115157-28115193)
chr4 (11-55)||(56154498-56154542)
[»] chr1 (9 HSPs)
chr1 (14-55)||(44738291-44738332)
chr1 (11-55)||(39281778-39281822)
chr1 (14-55)||(844974-845015)
chr1 (14-55)||(26118450-26118491)
chr1 (14-55)||(26765039-26765080)
chr1 (14-55)||(30105915-30105956)
chr1 (14-55)||(41972795-41972836)
chr1 (14-55)||(42510408-42510449)
chr1 (11-55)||(50540227-50540271)
[»] scaffold0280 (1 HSPs)
scaffold0280 (10-52)||(13863-13905)
[»] scaffold0208 (1 HSPs)
scaffold0208 (14-55)||(2519-2560)
[»] scaffold0098 (1 HSPs)
scaffold0098 (14-55)||(51313-51354)
[»] chr8 (8 HSPs)
chr8 (14-55)||(4052371-4052412)
chr8 (14-55)||(14005219-14005260)
chr8 (14-55)||(27103833-27103874)
chr8 (14-55)||(32020191-32020232)
chr8 (14-55)||(32303775-32303816)
chr8 (14-55)||(35225537-35225578)
chr8 (14-55)||(37861770-37861811)
chr8 (11-55)||(31731938-31731982)
[»] chr7 (3 HSPs)
chr7 (14-55)||(3922879-3922920)
chr7 (14-55)||(32873945-32873986)
chr7 (14-54)||(18470563-18470603)
[»] chr6 (3 HSPs)
chr6 (14-55)||(15277151-15277192)
chr6 (14-54)||(4494312-4494352)
chr6 (11-51)||(32410063-32410103)
[»] chr5 (7 HSPs)
chr5 (14-55)||(2351554-2351595)
chr5 (14-55)||(4818321-4818362)
chr5 (22-55)||(7725997-7726030)
chr5 (14-55)||(31880242-31880283)
chr5 (14-55)||(35701151-35701192)
chr5 (19-55)||(6284485-6284521)
chr5 (14-54)||(11963216-11963256)
[»] scaffold0014 (1 HSPs)
scaffold0014 (11-55)||(101823-101867)


Alignment Details
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 34651497 - 34651586
Alignment:
Q  194 tattttaaatctatcttttctttattataaaatctcatattttttaccttgctagaacaaaacacaatattttaacatctctccctcccc 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34651497 tattttaaatctatcttttctttattataaaatctcatattttttaccttgctagaacaaaacacaatattttaacatttctccctcccc 34651586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 34649728 - 34649812
Alignment:
Q  59 ttagtccacaactggttactcaattgataaaatattaaaattgttagaataaatatgtgattggggtttgaactcgactgatcta 143  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34649728 ttagtccacaactgattactcaattgataaaatattaaaattgttagaataaatatgtgattggggtttgaactcgactcatcta 34649812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 2134981 - 2134945
Alignment:
Q  19 ttctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||||||||||||||||||||||||||| ||||||||    
T  2134981 ttctgtctagtacttgctgttttgcaaaccaaacaca 2134945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 42636557 - 42636597
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacac 54  Q
    ||||||||||||||||||||| ||||||||||| |||||||    
T  42636557 tactattctgtctagtacttgttgttttgcaaaccaaacac 42636597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 21221529 - 21221570
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| |||||||||||||||||||| ||||||| ||||||||    
T  21221529 tactgttctgtctagtacttgctgtattgcaaaccaaacaca 21221570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 29584791 - 29584750
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  29584791 tactgttctgtccagtacttgctgttttgcaaaccaaacaca 29584750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 40083232 - 40083196
Alignment:
Q  19 ttctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||||||||||||||||||||||||||  ||||||||    
T  40083232 ttctgtctagtacttgctgttttgcaagccaaacaca 40083196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 47958606 - 47958642
Alignment:
Q  19 ttctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  47958606 ttctgtccagtacttgctgttttgcaaaccaaacaca 47958642  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 37004041 - 37004085
Alignment:
Q  11 ttatactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||    
T  37004041 ttatactgttctgtctagtacttgctgttttgcaaaccaaacaca 37004085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 30798659 - 30798703
Alignment:
Q  11 ttatactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    ||||||| ||||||| |||||||||||||||||||| ||||||||    
T  30798659 ttatactgttctgtccagtacttgctgttttgcaaaccaaacaca 30798703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 2085987 - 2085946
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  2085987 tactgttctgtccagtacttgctgttttgcaaaccaaacaca 2085946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 4641431 - 4641390
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  4641431 tactgttctgtccagtacttgctgttttgcaaagcaaacaca 4641390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 9717156 - 9717115
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  9717156 tactgttctgtccagtacttgctgttttgcaaaccaaacaca 9717115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 18685751 - 18685710
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  18685751 tactgttctgtccagtacttgctgttttgcaaaccaaacaca 18685710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 35114700 - 35114659
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  35114700 tactgttctgtccagtacttgctgttttgcaaaccaaacaca 35114659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 44284552 - 44284511
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  44284552 tactgttctgtccagtacttgctgttttgcaaaccaaacaca 44284511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 17540632 - 17540588
Alignment:
Q  11 ttatactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    ||||||| |||| || |||||||||||||||||||| ||||||||    
T  17540632 ttatactgttctatccagtacttgctgttttgcaaaccaaacaca 17540588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 33366520 - 33366484
Alignment:
Q  19 ttctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  33366520 ttctgtccagtacttgctgttttgcaaaccaaacaca 33366484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 43641017 - 43640976
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| |||||||||||||||||||||||||||| ||||||||    
T  43641017 tactgttctgtctagtacttgctgttttgcaaaccaaacaca 43640976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 49152264 - 49152308
Alignment:
Q  11 ttatactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    ||||||| ||||||| |||||||||||||||||||| ||||||||    
T  49152264 ttatactgttctgtccagtacttgctgttttgcaaaccaaacaca 49152308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 12600804 - 12600763
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  12600804 tactgttctgtccagtacttgctgttttgcaaaccaaacaca 12600763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 23521798 - 23521757
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  23521798 tactgttctgtccagtacttgctgttttgcaaaccaaacaca 23521757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 24002256 - 24002215
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  24002256 tactgttctgtccagtacttgctgttttgcaaaccaaacaca 24002215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 33552995 - 33553036
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  33552995 tactgttctgtccagtacttgctgttttgcaaaccaaacaca 33553036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 36885864 - 36885823
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| |||||||||||||| ||||||||||||| ||||||||    
T  36885864 tactgttctgtctagtactcgctgttttgcaaaccaaacaca 36885823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 42869900 - 42869859
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  42869900 tactgttctgtcgagtacttgctgttttgcaaaccaaacaca 42869859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 2725290 - 2725326
Alignment:
Q  19 ttctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  2725290 ttctgtccagtacttgctgttttgcaaaccaaacaca 2725326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 21579947 - 21579903
Alignment:
Q  11 ttatactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    ||||||| ||||||| ||||||| |||||||||||| ||||||||    
T  21579947 ttatactgttctgtccagtacttactgttttgcaaaccaaacaca 21579903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 28115193 - 28115157
Alignment:
Q  16 ctattctgtctagtacttgctgttttgcaaatcaaac 52  Q
    |||||||||||||||||| |||||||||||| |||||    
T  28115193 ctattctgtctagtacttactgttttgcaaaccaaac 28115157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 56154542 - 56154498
Alignment:
Q  11 ttatactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    ||||||| ||||||| |||||||| ||||||||||| ||||||||    
T  56154542 ttatactgttctgtccagtacttgttgttttgcaaaccaaacaca 56154498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 44738291 - 44738332
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| |||||||||||||||||||||||||||| ||||||||    
T  44738291 tactgttctgtctagtacttgctgttttgcaaaccaaacaca 44738332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 39281822 - 39281778
Alignment:
Q  11 ttatactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    ||||||||||||||| ||||||| |||||||||||| ||||||||    
T  39281822 ttatactattctgtccagtacttactgttttgcaaaccaaacaca 39281778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 844974 - 845015
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  844974 tactgttctgtccagtacttgctgttttgcaaaccaaacaca 845015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 26118450 - 26118491
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  26118450 tactgttctgtccagtacttgctgttttgcaaaccaaacaca 26118491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 26765039 - 26765080
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| ||||||| |||||||||||||||||||||    
T  26765039 tactgttctgtccagtacttactgttttgcaaatcaaacaca 26765080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 30105915 - 30105956
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  30105915 tactgttctgtccagtacttgctgttttgcaaaccaaacaca 30105956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 41972836 - 41972795
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  41972836 tactgttctgtccagtacttgctgttttgcaaaccaaacaca 41972795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 42510449 - 42510408
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| ||||||| |||||||||||||||||||||    
T  42510449 tactgttctgtccagtacttactgttttgcaaatcaaacaca 42510408  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 50540271 - 50540227
Alignment:
Q  11 ttatactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    ||||||| ||||||| ||||||| |||||||||||| ||||||||    
T  50540271 ttatactgttctgtcaagtacttactgttttgcaaaccaaacaca 50540227  T

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Target: scaffold0280 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 13863 - 13905
Alignment:
Q  10 attatactattctgtctagtacttgctgttttgcaaatcaaac 52  Q
    |||||||| ||||||| ||||||| ||||||||||||||||||    
T  13863 attatactgttctgtccagtacttactgttttgcaaatcaaac 13905  T

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Target: scaffold0208 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 2519 - 2560
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  2519 tactgttctgtccagtacttgctgttttgcaaaccaaacaca 2560  T

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Target: scaffold0098 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 51354 - 51313
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  51354 tactgttctgtccagtacttgctgttttgcaaaccaaacaca 51313  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 4052412 - 4052371
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  4052412 tactgttctgtccagtacttgctgttttgcaaaccaaacaca 4052371  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 14005219 - 14005260
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  14005219 tactgttctgtccagtacttgctgttttgcaaaccaaacaca 14005260  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 27103874 - 27103833
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||| ||||||||||||||||||||    
T  27103874 tactgttctgtccagtacttgttgttttgcaaatcaaacaca 27103833  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 32020191 - 32020232
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  32020191 tactgttctgtccagtacttgctgttttgcaaaccaaacaca 32020232  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 32303775 - 32303816
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  32303775 tactgttctgtccagtacttgctgttttgcaaaccaaacaca 32303816  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 35225578 - 35225537
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||||||||||| ||||||| |||||||||||| ||||||||    
T  35225578 tactattctgtccagtacttactgttttgcaaaccaaacaca 35225537  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 37861811 - 37861770
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| ||||||| |||||||||||||||||||||    
T  37861811 tactgttctgtccagtacttactgttttgcaaatcaaacaca 37861770  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 31731982 - 31731938
Alignment:
Q  11 ttatactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    ||||||| ||||||| ||||||| |||||||||||| ||||||||    
T  31731982 ttatacttttctgtccagtacttactgttttgcaaaccaaacaca 31731938  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 3922879 - 3922920
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  3922879 tactgttctgtccagtacttgctgttttgcaaaccaaacaca 3922920  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 32873945 - 32873986
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  32873945 tactgttctgtccagtacttgctgttttgcaaaccaaacaca 32873986  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 18470603 - 18470563
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacac 54  Q
    |||| ||||||| |||||||||||||||||||| |||||||    
T  18470603 tactgttctgtccagtacttgctgttttgcaaaccaaacac 18470563  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 15277151 - 15277192
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  15277151 tactgttctgtccagtacttgctgttttgcaaaccaaacaca 15277192  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 4494312 - 4494352
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacac 54  Q
    |||| ||||||||||||||| |||||||||||| |||||||    
T  4494312 tactgttctgtctagtacttactgttttgcaaaccaaacac 4494352  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 32410063 - 32410103
Alignment:
Q  11 ttatactattctgtctagtacttgctgttttgcaaatcaaa 51  Q
    ||||||| |||||||||||| || |||||||||||||||||    
T  32410063 ttatactgttctgtctagtatttactgttttgcaaatcaaa 32410103  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 2351595 - 2351554
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  2351595 tactgttctgtccagtacttgctgttttgcaaaccaaacaca 2351554  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 4818321 - 4818362
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  4818321 tactgttctgtccagtacttgctgttttgcaaaccaaacaca 4818362  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 7725997 - 7726030
Alignment:
Q  22 tgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||||||||||| |||||||||||||||||||||    
T  7725997 tgtctagtacttactgttttgcaaatcaaacaca 7726030  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 31880242 - 31880283
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| ||||||| |||||||||||||||||||||    
T  31880242 tactgttctgtccagtacttactgttttgcaaatcaaacaca 31880283  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 35701192 - 35701151
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    |||| ||||||| |||||||||||||||||||| ||||||||    
T  35701192 tactgttctgtccagtacttgctgttttgcaaaccaaacaca 35701151  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 6284485 - 6284521
Alignment:
Q  19 ttctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  6284485 ttctgtccagtacttgctgttttgtaaatcaaacaca 6284521  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 11963256 - 11963216
Alignment:
Q  14 tactattctgtctagtacttgctgttttgcaaatcaaacac 54  Q
    |||| ||||||| |||||||||||||||||||| |||||||    
T  11963256 tactgttctgtccagtacttgctgttttgcaaaccaaacac 11963216  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 101867 - 101823
Alignment:
Q  11 ttatactattctgtctagtacttgctgttttgcaaatcaaacaca 55  Q
    ||||||| |||||||  ||||||||||||||||||| ||||||||    
T  101867 ttatactgttctgtccggtacttgctgttttgcaaaccaaacaca 101823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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