View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4595_low_12 (Length: 247)
Name: NF4595_low_12
Description: NF4595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4595_low_12 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-128; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 3357310 - 3357540
Alignment:
| Q |
1 |
ttgagaaactgttatgaaagagcggcaatcaaagtggcttttcaccaactcgttatcaaagacatgcttagcaagagttgtttttccgagtcctcccatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3357310 |
ttgagaaactgttatgaaagagcggcaatcaaagtggcttttcaccaactcgttatcaaagacatgcttagcaagagttgtttttccgagtcctcccatg |
3357409 |
T |
|
| Q |
101 |
cctagcacagaaaccaacgtccgttcattctctccacccaccaaaagacgaaccaattcatttgttggggactcaaaccctacaacttgagtctcttcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3357410 |
cctagcacagaaaccaacgtccgttcattctctccacccaccaaaagacgaaccaattcatttgttggggactcaaaccctacaacttgagtctcttcaa |
3357509 |
T |
|
| Q |
201 |
tgaaataaggagccattcgagggtcaccaat |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
3357510 |
tgaaataaggagccattcgagggtcaccaat |
3357540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 3721738 - 3721513
Alignment:
| Q |
1 |
ttgagaaactgttatgaaagagcggcaatcaaagtggcttttcaccaactcgttatcaaagacatgcttagcaagagttgtttttccgagtcctcccatg |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3721738 |
ttgagaaactgttatgaaagagcagcaatcaaagtggcttttcaccaactggttatcaaaaacatgcttagcaagagttgtttttccgagtcctcccatg |
3721639 |
T |
|
| Q |
101 |
cctagcacagaaaccaacgtccgttcattctctccacccaccaaaagacgaaccaattcatttgttggggactcaaaccctacaacttgagtctcttcaa |
200 |
Q |
| |
|
|||| |||||||||| | || || ||||| |||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
3721638 |
cctaccacagaaacccatgtgcgctcattggctccccccaccaaaagactaaccaattcatttgttggggactcaaacccaacaacttgagtctcttcaa |
3721539 |
T |
|
| Q |
201 |
tgaaataaggagccattcgagggtca |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
3721538 |
tgaaataaggagccattcgagggtca |
3721513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 3303889 - 3304122
Alignment:
| Q |
1 |
ttgagaaactgttatgaaagagcggcaatcaaagtggcttttcaccaactcgttatcaaagacatgcttagcaagagttgtttttccgagtcctcccatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3303889 |
ttgagaaactgttatgaaagagcggcaatcaaagtggcttttcaccaaatcgttatcaaaaacatgcttagcaagagttgtttttccgagtcctcccatg |
3303988 |
T |
|
| Q |
101 |
cct---agcacagaaaccaacgtccgttcattctctccacccaccaaaagacgaaccaattcatttgttggggactcaaaccctacaacttgagtctctt |
197 |
Q |
| |
|
||| | ||||||||||||||| | ||||| ||||||||||||||| |||||| |||||||||||||||||||||||| || |||||||||||||||| |
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|
| T |
3303989 |
cctaccaccacagaaaccaacgtgtgctcattgtctccacccaccaaacgacgaatcaattcatttgttggggactcaaatcccacaacttgagtctctt |
3304088 |
T |
|
| Q |
198 |
caatgaaataaggagccattcgagggtcaccaat |
231 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
3304089 |
caatgaaatagggagccattcgagggtcaccaat |
3304122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 3322164 - 3322394
Alignment:
| Q |
1 |
ttgagaaactgttatgaaagagcggcaatcaaagtggcttttcaccaactcgttatcaaagacatgcttagcaagagttgtttttccgagtcctcccatg |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| ||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3322164 |
ttgagaaactgttatgaaagagcgataattaaattggtctttcaccaactggttattaaaaacatgcttagcaagagttgtttttccgagtcctcccatg |
3322263 |
T |
|
| Q |
101 |
cctagcacagaaaccaacgtccgttcattctctccacccaccaaaagacgaaccaattcatttgttggggactcaaaccctacaacttgagtctcttcaa |
200 |
Q |
| |
|
|||| ||||| || |||| |||| ||||| ||| || |||||| || |||||||||| |||||| ||||||||| |||||||||||||||||| |
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|
| T |
3322264 |
cctaccacagtaatcaacatccgctcattggttcccccaaccaaaccacttaccaattcatctgttggatcctcaaaccccacaacttgagtctcttcag |
3322363 |
T |
|
| Q |
201 |
tgaaataaggagccattcgagggtcaccaat |
231 |
Q |
| |
|
||||||| |||||||||||||||||||||| |
|
|
| T |
3322364 |
ggaaataaagagccattcgagggtcaccaat |
3322394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 3221415 - 3221644
Alignment:
| Q |
1 |
ttgagaaactgttatgaaagagcggcaatcaaagtggcttttcaccaactcgttatcaaagacatgcttagcaagagttgtttttccgagtcctcccatg |
100 |
Q |
| |
|
|||||||||||| |||||| | || ||||||||||| ||||||| | || ||||||||| |||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
3221415 |
ttgagaaactgtgatgaaacatcgacaatcaaagtgctttttcacaagcttgttatcaaaaacatgcttagaaagagttgtttttccaagtcctcccata |
3221514 |
T |
|
| Q |
101 |
cctagcacagaaaccaacgtccgttcattctctccacccaccaaaagacgaaccaattcatttgttggggactcaaaccctacaacttgagtctcttcaa |
200 |
Q |
| |
|
|| | |||||||| |||| | | ||||| ||| |||||||| || ||||||||||| | |||| |||||||| || |||||||| ||||||||| |
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|
| T |
3221515 |
ccaaccacagaaatcaacatgagctcatttgttccctccaccaaacaactaaccaattcatctcttggcgactcaaatcccacaacttggttctcttcaa |
3221614 |
T |
|
| Q |
201 |
tgaaataaggagccattcgagggtcaccaa |
230 |
Q |
| |
|
|||||| | |||||||||| | ||||||| |
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|
| T |
3221615 |
tgaaatgcgaagccattcgaagatcaccaa |
3221644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 3201138 - 3200918
Alignment:
| Q |
1 |
ttgagaaactgttatgaaagagcggcaatcaaagtggcttttcaccaactcgttatcaaagacatgcttagcaagagttgtttttccgagtcctcccatg |
100 |
Q |
| |
|
|||||||||||| | |||| |||| |||||||||| | ||||||| | || ||| | ||| ||||| |||||||||| ||||| |||| |||||||||| |
|
|
| T |
3201138 |
ttgagaaactgtgacgaaatagcgacaatcaaagtagtttttcacaacctggttttgaaaaacatggctagcaagagtagttttcccgattcctcccatg |
3201039 |
T |
|
| Q |
101 |
cctagcacagaaaccaacgtccgttcattctctccacccaccaaaagacgaaccaattcatttgttggggactcaaaccctacaacttgagtctcttcaa |
200 |
Q |
| |
|
|| | |||||||||||| | | ||| | ||| |||||||| | ||||||||||| | |||||||||||||||| |||||||||||||||| || |
|
|
| T |
3201038 |
ccaacaacagaaaccaacatgagctcactggttccccccaccaagcatctaaccaattcatcttttggggactcaaaccccacaacttgagtctcttgaa |
3200939 |
T |
|
| Q |
201 |
tgaaataaggagccattcgag |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
3200938 |
tgaaataaggagccattcgag |
3200918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 180
Target Start/End: Original strand, 3198322 - 3198476
Alignment:
| Q |
26 |
caatcaaagtggcttttcaccaactcgttatcaaagacatgcttagcaagagttgtttttccgagtcctcccatgcctagcacagaaaccaacgtccgtt |
125 |
Q |
| |
|
|||||||||||| |||||||| | |||||||| |||| |||||||||||| ||||| ||||||||||||||||| | |||||||||||| | || | |
|
|
| T |
3198322 |
caatcaaagtggtttttcacctcatgtttatcaaaaacatacttagcaagagtcgttttaccgagtcctcccatgccaacaacagaaaccaacatgcgct |
3198421 |
T |
|
| Q |
126 |
cattctctccacccaccaaaagacgaaccaattcatttgttggggactcaaaccc |
180 |
Q |
| |
|
|| | ||| ||||||| | | ||||||||||| | |||||||||||||||| |
|
|
| T |
3198422 |
cactggttccctccaccaagaatctaaccaattcatctcttggggactcaaaccc |
3198476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 204
Target Start/End: Original strand, 3310590 - 3310768
Alignment:
| Q |
26 |
caatcaaagtggcttttcaccaactcgttatcaaagacatgcttagcaagagttgtttttccgagtcctcccatgcctagcacagaaaccaacgtccgtt |
125 |
Q |
| |
|
||||||||||| |||||| ||| ||||| ||| |||| |||||||||||| |||||||| |||||||||||||| | ||||||| |||| || | | |
|
|
| T |
3310590 |
caatcaaagtgctctttcacatactggttattaaaaacatacttagcaagagtcgtttttccaagtcctcccatgccaacaacagaaatcaacatcaggt |
3310689 |
T |
|
| Q |
126 |
cattctctccacccaccaaaagacgaaccaattcatttgttggggactcaaaccctacaacttgagtctcttcaatgaa |
204 |
Q |
| |
|
|| | ||| ||||||| || || |||||||| | |||| ||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
3310690 |
cactggttccggacaccaaataactaatcaattcatctcttggagactcaatccccacaacttgagtctcttcaatgaa |
3310768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 41947163 - 41947256
Alignment:
| Q |
1 |
ttgagaaactgttatgaaagagcggcaatcaaagtggcttttcaccaactcgttatcaaagacatgcttagcaagagttgtttttccgagtcct |
94 |
Q |
| |
|
|||||||||||| |||||| | | ||||||||||| |||| || | || ||||||||| |||||||||| ||||||||||||||| |||||| |
|
|
| T |
41947163 |
ttgagaaactgtgatgaaacacctacaatcaaagtgcttttttacaagcttgttatcaaaaacatgcttagaaagagttgtttttcctagtcct |
41947256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 226
Target Start/End: Original strand, 49386439 - 49386603
Alignment:
| Q |
62 |
acatgcttagcaagagttgtttttccgagtcctcccatgcctagcacagaaaccaacgtccgttcattctctccacccaccaaaagacgaaccaattcat |
161 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||| || || | |||| |||||||| | | | ||| ||| |||||||| || ||||||||||| |
|
|
| T |
49386439 |
acatgcttagaaagagttgtttttccaagtcctcctataccaaacacataaaccaacatgagcttattggttccctccaccaaacaactaaccaattcat |
49386538 |
T |
|
| Q |
162 |
ttgttggggactcaaaccctacaacttgagtctcttcaatgaaataaggagccattcgagggtca |
226 |
Q |
| |
|
| |||| |||||||| || |||||||| ||||||||||||| | | |||||||||| ||||| |
|
|
| T |
49386539 |
ctcttggcgactcaaatcccacaacttggttctcttcaatgaattgtgaagccattcgaaggtca |
49386603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 230
Target Start/End: Original strand, 41947314 - 41947392
Alignment:
| Q |
152 |
accaattcatttgttggggactcaaaccctacaacttgagtctcttcaatgaaataaggagccattcgagggtcaccaa |
230 |
Q |
| |
|
|||||||||| | |||| |||||||| || |||||||||||||||| |||||||| | |||||||||| | ||||||| |
|
|
| T |
41947314 |
accaattcatctcttggtgactcaaatcccacaacttgagtctctttaatgaaatgcgaagccattcgaagatcaccaa |
41947392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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