View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4595_low_4 (Length: 431)
Name: NF4595_low_4
Description: NF4595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4595_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 5 - 401
Target Start/End: Complemental strand, 21445710 - 21445314
Alignment:
| Q |
5 |
cacagactctagacaacactgataataatttgagaatatgaaatcaactcaatgtaaactagagtatcggtggtgtgtcggtcggtgtcagacatttgac |
104 |
Q |
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| T |
21445710 |
cacagactctagacaacactgataataatttgagaatatgaaatcaactcaatgtaaactagagtatcggtggtgtgtcggtcggtgtcagacatttgac |
21445611 |
T |
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| Q |
105 |
acattttcaatctgaaagtatcgatgctacacatagtagtacttttaactaattttgagtccttttgtattttgcgctccaggttggatctgtagacgag |
204 |
Q |
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| T |
21445610 |
acattttcaatctgaaagtatcgatgctacacatagtagtacttttaactaattttgagtccttttgtattttgcgctccaggttggatctgtagacgag |
21445511 |
T |
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| Q |
205 |
gaatcaacgaagtctgatgaagagtacgacgatcttgcaatggaagatgtgttggaaaatggttattggacagatgatgactatgagttaaagaccaagc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
21445510 |
gaatcaacgaagtctgatgaagagtacgacgatcttgcaatggaagatgtgttggaaaatggttattggacagatgatgattacgagttaaagaccaagc |
21445411 |
T |
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| Q |
305 |
ttgatgttgtggagcttggagctaaaatccatgggattaaataccgccaaaatctcgaccaattccttagaactagaagtgagccggtgccaatagc |
401 |
Q |
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| T |
21445410 |
ttgatgttgtggagcttggagctaaaatccatgggattaaataccgccaaaatctcgaccaattccttagaactagaagtgagccggtgccaatagc |
21445314 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 284
Target Start/End: Original strand, 40686811 - 40686896
Alignment:
| Q |
199 |
gacgaggaatcaacgaagtctgatgaagagtacgacgatcttgcaatggaagatgtgttggaaaatggttattggacagatgatga |
284 |
Q |
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| T |
40686811 |
gacgaggaatcaaccaagtctgatgaagagtatgatgatttggcaatgcaagatgtgcctgaaagtggatattggtcagatgatga |
40686896 |
T |
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