View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4595_low_8 (Length: 317)
Name: NF4595_low_8
Description: NF4595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4595_low_8 |
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| [»] chr3 (8 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 317
Target Start/End: Original strand, 3357019 - 3357319
Alignment:
| Q |
17 |
atgaacaggaaaagatttcttaaaatattctgctactttcatatttctagtggtcacgatgattctacttcctttgttattactaattaaggcatgttca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3357019 |
atgaacaggaaaagatttcttaaaatattctgctactttcatatttctagtggtcacgatgattctacttcctttgttattactaattaaggcatgttca |
3357118 |
T |
|
| Q |
117 |
atctcatcagaaaaaatttcttcccaaacatcatcaaataaaaccaagtacctttttgactcaaggtattgtcttacttgagtaatcaatgttctgtcat |
216 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3357119 |
atctcatcagaaaaattttcttcccaaacatcatcaaataaaaccaagtacctttttgactcaaggtattgtcttacttgagtaatcaatgttctgtcat |
3357218 |
T |
|
| Q |
217 |
ccatcttccgcagaccctttggaatagtctcattgttgttcgtgcaagatgtttttatgatatctatcagcaactccgtcatagtataggattgagaaac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3357219 |
ccatcttccgcagaccctttggaatagtctcattgttgttcgtgcaagatgtttttatgatatctatcagcaactctgtcatagtataggattgagaaac |
3357318 |
T |
|
| Q |
317 |
t |
317 |
Q |
| |
|
| |
|
|
| T |
3357319 |
t |
3357319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 3722029 - 3721729
Alignment:
| Q |
17 |
atgaacaggaaaagatttcttaaaatattctgctactttcatatttctagtggtcacgatgattctacttcctttgttattactaattaaggcatgttca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
3722029 |
atgaacaggaaaagatttcttaaaatattctgctacgttcatttttctagtggtcacgatgattctacttccttcgttattactaattaaggcatgttca |
3721930 |
T |
|
| Q |
117 |
atctcatcagaaaaaatttcttcccaaacatcatcaaataaaaccaagtacctttttgactcaaggtattgtcttacttgagtaatcaatgttctgtcat |
216 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||| |
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|
| T |
3721929 |
atctcatcagaaaagttttcttcccaaacatcatcaaataaaaccaagtacctttttgactcgaggtattgtcttactcgagtaatcaatgttttgtcat |
3721830 |
T |
|
| Q |
217 |
ccatcttccgcagaccctttggaatagtctcattgttgttcgtgcaagatgtttttatgatatctatcagcaactccgtcatagtataggattgagaaac |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||| ||||||||||||||| |||||||||||||| |
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| T |
3721829 |
ccatcttccgcagaccctttggaatagtctcattgttgttcatgcaagatgattttatcacatctatcaacaactccgtcatagtgtaggattgagaaac |
3721730 |
T |
|
| Q |
317 |
t |
317 |
Q |
| |
|
| |
|
|
| T |
3721729 |
t |
3721729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 317
Target Start/End: Original strand, 3303598 - 3303898
Alignment:
| Q |
17 |
atgaacaggaaaagatttcttaaaatattctgctactttcatatttctagtggtcacgatgattctacttcctttgttattactaattaaggcatgttca |
116 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
3303598 |
atgaacaggaaaatctttcgtaaaatattctgctactttcatatttctagtggtcacgatgattctacttcctttgttattactaattaaggcatgttta |
3303697 |
T |
|
| Q |
117 |
atctcatcagaaaaaatttcttcccaaacatcatcaaataaaaccaagtacctttttgactcaaggtattgtcttacttgagtaatcaatgttctgtcat |
216 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||| |||||| |
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|
| T |
3303698 |
atctcatcagaaaatttttctttccaaacatcatcaaataaaaccaagtacctttttgtttcgaggtattgtcttacttgaataatcaatgttttgtcat |
3303797 |
T |
|
| Q |
217 |
ccatcttccgcagaccctttggaatagtctcattgttgttcgtgcaagatgtttttatgatatctatcagcaactccgtcatagtataggattgagaaac |
316 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| |||| | |||| | | ||||| || ||| | | ||||||| ||||||| || ||||||||||| |
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|
| T |
3303798 |
ccatcttctgcagaccctttggaataggatcattcttgtccttgcacaacttctttatcatttctgtaaacaactccctcatagtgtatgattgagaaac |
3303897 |
T |
|
| Q |
317 |
t |
317 |
Q |
| |
|
| |
|
|
| T |
3303898 |
t |
3303898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 3201429 - 3201129
Alignment:
| Q |
17 |
atgaacaggaaaagatttcttaaaatattctgctactttcatatttctagtggtcacgatgattctacttcctttgttattactaattaaggcatgttca |
116 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||| | ||| ||||| ||||||| ||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
3201429 |
atgaacaagaaaagatttcttaaaatattcagctacatgcatcattctactggtcacaatgattctacttcctttgtcattactaattaaggcatcttca |
3201330 |
T |
|
| Q |
117 |
atctcatcagaaaaaatttcttcccaaacatcatcaaataaaaccaagtacctttttgactcaaggtattgtcttacttgagtaatcaatgttctgtcat |
216 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||| |||| ||||||||| ||||| | ||| | ||| ||||| |||||||||||||| ||| || |
|
|
| T |
3201329 |
atctcatcagaaaaactttctttccaaacatcatcaaacaaaagcaagtacctctttgattgaagatgttgccttacatgagtaatcaatgtgttgttat |
3201230 |
T |
|
| Q |
217 |
ccatcttccgcagaccctttggaatagtctcattgttgttcgtgcaagatgtttttatgatatctatcagcaactccgtcatagtataggattgagaaac |
316 |
Q |
| |
|
||||||||| ||| ||| ||||||| ||||||||||| | || || | | |||| ||||| |||| || |||| ||| ||| |||||||||||||| |
|
|
| T |
3201229 |
ccatcttccatagaaacttgggaataggctcattgttgtccatgaaaaacttctttaccatatcaatcaacatctccctcagagtgtaggattgagaaac |
3201130 |
T |
|
| Q |
317 |
t |
317 |
Q |
| |
|
| |
|
|
| T |
3201129 |
t |
3201129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 3321873 - 3322098
Alignment:
| Q |
17 |
atgaacaggaaaagatttcttaaaatattctgctactttcatatttctagtggtcacgatgattctacttcctttgttattactaattaaggcatgttca |
116 |
Q |
| |
|
|||||||| |||| ||||||||||| || |||||||| ||| ||||| |||||||||||||||||||||||| ||||||| |||||||||||||| || |
|
|
| T |
3321873 |
atgaacagaaaaatatttcttaaaactttttgctacttgcatgtttcttgtggtcacgatgattctacttcctgtgttattgctaattaaggcatgcgca |
3321972 |
T |
|
| Q |
117 |
atctcatcagaaaaaatttcttcccaaacatcatcaaataaaaccaagtacctttttgactcaaggtattgtcttacttgagtaatcaatgttctgtcat |
216 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| || ||||||||||| |||| ||||||||| |||| |||||| |||| |||| | ||||| |
|
|
| T |
3321973 |
atctcatcagaaaatttttcttcccaaacatcatcaaaaaacaccaagtacctccttgattcaaggtatcgtctcacttgattaatgaatgcttcgtcat |
3322072 |
T |
|
| Q |
217 |
ccatcttccgcagaccctttggaata |
242 |
Q |
| |
|
||||||| ||| ||||||||||||| |
|
|
| T |
3322073 |
ccatcttgagcaaaccctttggaata |
3322098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 20 - 317
Target Start/End: Original strand, 3221127 - 3221424
Alignment:
| Q |
20 |
aacaggaaaagatttcttaaaatattctgctactttcatatttctagtggtcacgatgattctacttcctttgttattactaattaaggcatgttcaatc |
119 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||||||| ||| ||||||||||||| ||||||||||| ||||| |||||| || | |||| | ||||| |
|
|
| T |
3221127 |
aacatgaaaagatttcctaaaatattcagctacttgcattgttctagtggtcacaatgattctactacctttcttattattagacatagcatttacaatc |
3221226 |
T |
|
| Q |
120 |
tcatcagaaaaaatttcttcccaaacatcatcaaataaaaccaagtacctttttgactcaaggtattgtcttacttgagtaatcaatgttctgtcatcca |
219 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||| || || |||||||||||||| |||||||||| ||| ||||||| ||||||||| ||||||||| |
|
|
| T |
3221227 |
tcatcacaaaaaatttctttccaaacatcatcaaaaaacactaagtacctttttgattcaaggtattctctcacttgagcaatcaatgtaatgtcatcca |
3221326 |
T |
|
| Q |
220 |
tcttccgcagaccctttggaatagtctcattgttgttcgtgcaagatgtttttatgatatctatcagcaactccgtcatagtataggattgagaaact |
317 |
Q |
| |
|
||| | ||||||||||||| ||| ||||||| ||| | ||||| | | |||| ||||| |||| ||||||| ||||| ||| |||||||||||| |
|
|
| T |
3221327 |
tctcctgcagaccctttggtgtaggctcattgctgtccttgcaaaacttctttaccatatcaatcaacaactccttcatatcatacgattgagaaact |
3221424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 29 - 255
Target Start/End: Original strand, 3310286 - 3310512
Alignment:
| Q |
29 |
agatttcttaaaatattctgctactttcatatttctagtggtcacgatgattctacttcctttgttattactaattaaggcatgttcaatctcatcagaa |
128 |
Q |
| |
|
||||||||||||||||||| ||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||| | |
|
|
| T |
3310286 |
agatttcttaaaatattctactatattcatttttctagtggtcatgatgattctacttcctttgttattactaattaaggcatgtttaatttcatcagga |
3310385 |
T |
|
| Q |
129 |
aaaatttcttcccaaacatcatcaaataaaaccaagtacctttttgactcaaggtattgtcttacttgagtaatcaatgttctgtcatccatcttccgca |
228 |
Q |
| |
|
|| ||||| ||||||||||||||| |||| ||||||||| ||||| | ||| | ||| ||||| |||||||||||||| ||| ||||||||||| | |
|
|
| T |
3310386 |
aatgcttctttccaaacatcatcaaacaaaagcaagtacctctttgattgaagatgttgccttacatgagtaatcaatgtgttgttatccatcttccata |
3310485 |
T |
|
| Q |
229 |
gaccctttggaatagtctcattgttgt |
255 |
Q |
| |
|
|| ||| ||||||| |||||| |||| |
|
|
| T |
3310486 |
gagacttgggaataggctcattattgt |
3310512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 3198006 - 3198239
Alignment:
| Q |
17 |
atgaacaggaaaagatttcttaaaatattctgctactttcatatttctagtggtcacgatgattctacttcctttgttattactaattaaggcatgttca |
116 |
Q |
| |
|
|||| |||||||||||| | ||||||||||||| | | ||| ||||||||||||| |||||||||||||| ||||||||||| | ||||||| ||| |
|
|
| T |
3198006 |
atgaccaggaaaagattcccgaaaatattctgctgcatgcatcattctagtggtcacaatgattctacttccgttgttattacttaccaaggcatattcg |
3198105 |
T |
|
| Q |
117 |
atctcatcagaaaaaatttcttcccaaacatcatcaaataaaaccaagtacctttttgactcaaggtattgtcttacttgagtaatcaatgttctgtcat |
216 |
Q |
| |
|
||| | |||| ||| ||||| || |||||||||||| | | ||||||||| ||||| ||||||||| || || |||||| ||||||| | |||| |
|
|
| T |
3198106 |
atcccttcagcaaattcttctttccgaacatcatcaaaccacatcaagtacctctttgattcaaggtatgccctcacatgagtagtcaatgtaatatcat |
3198205 |
T |
|
| Q |
217 |
ccatcttccgcagaccctttggaatagtctcatt |
250 |
Q |
| |
|
||||| | ||||||||||||||||| |||||| |
|
|
| T |
3198206 |
gcatctccttcagaccctttggaataggctcatt |
3198239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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