View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4595_low_9 (Length: 311)

Name: NF4595_low_9
Description: NF4595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4595_low_9
NF4595_low_9
[»] chr4 (3 HSPs)
chr4 (32-297)||(30774518-30774783)
chr4 (69-297)||(9336568-9336793)
chr4 (172-265)||(35131757-35131850)
[»] chr7 (10 HSPs)
chr7 (90-297)||(8586401-8586608)
chr7 (95-297)||(8666685-8666884)
chr7 (97-297)||(8615981-8616181)
chr7 (175-297)||(17259499-17259621)
chr7 (184-297)||(6788778-6788891)
chr7 (96-295)||(3146535-3146731)
chr7 (173-297)||(10495149-10495273)
chr7 (175-297)||(17267202-17267324)
chr7 (95-199)||(8658727-8658831)
chr7 (89-156)||(8646284-8646351)
[»] chr2 (2 HSPs)
chr2 (68-295)||(16658193-16658420)
chr2 (126-297)||(16662726-16662897)
[»] chr1 (1 HSPs)
chr1 (213-297)||(15594304-15594388)
[»] chr8 (1 HSPs)
chr8 (88-158)||(43744221-43744291)


Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 32 - 297
Target Start/End: Complemental strand, 30774783 - 30774518
Alignment:
Q  32 acctgtgaagatgacaaaaggatatggtactgctggagataaccattgcagtgtctatattaatgtttatgagggcgagagaacaagagccgtggacaac 131  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||| |||||| |||||||||||||||||| |||||| |||||| || |||||||    
T  30774783 acctgtgaagatgacaaaaggatatggtactgctagcgataaccattgccgtgtctctattaatgtttatgagggtgagagagcaagagtcgcggacaac 30774684  T
Q  132 aatctgctaggttcttttattctttcttgtcttccaggtactcctcgtggccatcctttggatgtatgcttcactatagacgaaaatggtatactgaatg 231  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||    
T  30774683 aatctgctaggttcttttattctttcttgtcttccagatactcctcgtggccaacctttggatgtatgcttcactatcaacgaaaatggtatactgaatg 30774584  T
Q  232 tttctgctatggaaaaatccactggcaatatgaacgagatcacgataaccaacgacaaagaaaggt 297  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30774583 tttctgctatggaaaaatccactggcaatatgaatgagatcacgataaccaacgacaaagaaaggt 30774518  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 297
Target Start/End: Original strand, 9336568 - 9336793
Alignment:
Q  69 gataaccattgcagtgtctatattaatgtttatgagggcgagagaacaagagccgtggacaacaatctgctaggttcttttattctttcttgtcttccag 168  Q
    |||||||| |||| |||| || ||  |||||||||||| |||||| |||||||    ||||| |||||||| ||||| |||   |||  |||||||||||    
T  9336568 gataaccagtgcattgtcgattttcctgtttatgagggtgagagaccaagagctactgacaataatctgcttggttcatttcggcttcattgtcttccag 9336667  T
Q  169 gtactcctcgtggccatcctttggatgtatgcttcactatagacgaaaatggtatactgaatgtttctgctatggaaaaatccactggcaatatgaacga 268  Q
       |||| ||||||||||| ||||| |  |||||  | || || |||||||| || || | |||| |||||| ||||| ||| || |||||||||||||     
T  9336668 ---ctccccgtggccatcccttggaggcctgcttttcgattgatgaaaatggcatcctaactgttactgctagggaaatatctacaggcaatatgaacgc 9336764  T
Q  269 gatcacgataaccaacgacaaagaaaggt 297  Q
     ||||| || || || |||||||||||||    
T  9336765 aatcaccattactaatgacaaagaaaggt 9336793  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 265
Target Start/End: Complemental strand, 35131850 - 35131757
Alignment:
Q  172 ctcctcgtggccatcctttggatgtatgcttcactatagacgaaaatggtatactgaatgtttctgctatggaaaaatccactggcaatatgaa 265  Q
    ||||||| ||||| ||||  ||||| || || ||||| || |||||||||||  ||| ||||||||||| |||||||||||| ||||| |||||    
T  35131850 ctcctcgcggccacccttacgatgtttgttttactatcgatgaaaatggtattttgactgtttctgctaaggaaaaatccaccggcaaaatgaa 35131757  T

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Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 90 - 297
Target Start/End: Original strand, 8586401 - 8586608
Alignment:
Q  90 attaatgtttatgagggcgagagaacaagagccgtggacaacaatctgctaggttcttttattctttcttgtcttccaggtactcctcgtggccatcctt 189  Q
    ||||| ||||||||||| |||||| |||||||    |||||||||||||| || | ||||| |||||| ||  | || ||| |||||||||| ||||| |    
T  8586401 attaaggtttatgagggtgagagagcaagagctagtgacaacaatctgcttggcttttttaatctttcgtgcgtcccgggtgctcctcgtgggcatccct 8586500  T
Q  190 tggatgtatgcttcactatagacgaaaatggtatactgaatgtttctgctatggaaaaatccactggcaatatgaacgagatcacgataaccaacgacaa 289  Q
    | || ||||||||||| || || ||||||||||| || | ||||||||| | ||||| |||| |||||||||  ||||| || ||||||||||| |||||    
T  8586501 ttgaggtatgcttcaccatcgatgaaaatggtatcctaactgtttctgcgaaggaaatatcctctggcaatacaaacgaaataacgataaccaatgacaa 8586600  T
Q  290 agaaaggt 297  Q
    ||||||||    
T  8586601 agaaaggt 8586608  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 95 - 297
Target Start/End: Complemental strand, 8666884 - 8666685
Alignment:
Q  95 tgtttatgagggcgagagaacaagagccgtggacaacaatctgctaggttcttttattctttcttgtcttccaggtactcctcgtggccatcctttggat 194  Q
    |||||||||||| |||||| ||||||| |  ||||| |||||||| ||||| |||   |||  |||||||||||||   || |||||||| || |||||     
T  8666884 tgtttatgagggtgagagaccaagagctgctgacaataatctgcttggttcatttgggcttcgttgtcttccaggt---ccccgtggccagcccttggag 8666788  T
Q  195 gtatgcttcactatagacgaaaatggtatactgaatgtttctgctatggaaaaatccactggcaatatgaacgagatcacgataaccaacgacaaagaaa 294  Q
    ||||||||  | || || ||||||||||| |||| |||| |||||| ||||| |||||| ||||||||||||  |||||| |||||||| ||||||||||    
T  8666787 gtatgcttttcaattgatgaaaatggtatcctgactgttactgctagggaaatatccacaggcaatatgaacatgatcaccataaccaatgacaaagaaa 8666688  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 297
Target Start/End: Complemental strand, 8616181 - 8615981
Alignment:
Q  97 tttatgagggcgagagaacaagagccgtggacaacaatctgctaggttcttttattctttcttgtcttccaggtactcctcgtggccatcctttggatgt 196  Q
    |||||||||| |||||| |||||||    |||||||||||||| || | ||||  |||||| ||   ||| ||| ||||| ||| |||||| ||||| ||    
T  8616181 tttatgagggtgagagatcaagagctagtgacaacaatctgcttggatttttttatctttcgtgcactcctggtgctccttgtgaccatcccttggaggt 8616082  T
Q  197 atgcttcactatagacgaaaatggtatactgaatgtttctgctatggaaaaatccactggcaatatgaacgagatcacgataaccaacgacaaagaaagg 296  Q
    ||||||||| || ||||| |||||||| || | ||| ||||| | ||||||||| ||||||||||  || || || ||||||||||| ||||||||||||    
T  8616081 atgcttcaccatcgacgataatggtatccttactgtatctgcgaaggaaaaatctactggcaatacaaatgaaataacgataaccaatgacaaagaaagg 8615982  T
Q  297 t 297  Q
    |    
T  8615981 t 8615981  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 175 - 297
Target Start/End: Complemental strand, 17259621 - 17259499
Alignment:
Q  175 ctcgtggccatcctttggatgtatgcttcactatagacgaaaatggtatactgaatgtttctgctatggaaaaatccactggcaatatgaacgagatcac 274  Q
    ||||||| |||||||| || ||||||||   ||| ||  ||||||||||  |||  |||||||||||||| ||||||||||||| || ||| ||||| ||    
T  17259621 ctcgtggtcatccttttgaagtatgctttgatatcgatcaaaatggtattttgacagtttctgctatggacaaatccactggcagtaagaatgagattac 17259522  T
Q  275 gataaccaacgacaaagaaaggt 297  Q
     |||||||| ||||||| |||||    
T  17259521 aataaccaatgacaaaggaaggt 17259499  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 297
Target Start/End: Complemental strand, 6788891 - 6788778
Alignment:
Q  184 atcctttggatgtatgcttcactatagacgaaaatggtatactgaatgtttctgctatggaaaaatccactggcaatatgaacgagatcacgataaccaa 283  Q
    ||||||| |||||||  ||  |||| || |||||||||||  |||  ||||||||||  ||||||||||| ||||||||||| ||||| || ||||||||    
T  6788891 atccttttgatgtatatttttctattgatgaaaatggtattttgaccgtttctgctactgaaaaatccacgggcaatatgaatgagattaccataaccaa 6788792  T
Q  284 cgacaaagaaaggt 297  Q
      ||||||||||||    
T  6788791 ttacaaagaaaggt 6788778  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 295
Target Start/End: Complemental strand, 3146731 - 3146535
Alignment:
Q  96 gtttatgagggcgagagaacaagagccgtggacaacaatctgctaggttcttttattctttcttgtcttccaggtactcctcgtggccatcctttggatg 195  Q
    ||||||||||| |||||| |||||||    |||||||||||||| |||||||||  ||||||| |||  ||| || ||||||| || || ||||| || |    
T  3146731 gtttatgagggtgagagagcaagagctagtgacaacaatctgcttggttctttttgtctttct-gtc--ccaagtgctcctcgcggtcacccttttgagg 3146635  T
Q  196 tatgcttcactatagacgaaaatggtatactgaatgtttctgctatggaaaaatccactggcaatatgaacgagatcacgataaccaacgacaaagaaag 295  Q
    ||||||| |||||  | |||||||| ||  | | |||||||||||  |||||||||||||| | || ||| ||||| ||  |||| || |||||||||||    
T  3146634 tatgctttactatcaatgaaaatggcatcttaattgtttctgctaatgaaaaatccactggtagtacgaatgagattacagtaactaatgacaaagaaag 3146535  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 297
Target Start/End: Original strand, 10495149 - 10495273
Alignment:
Q  173 tcctcgtggccatcctttggatgtatgcttcactatagacgaaaatggtatactgaatgtttctgctatggaaaaatccactggcaatatgaacgagatc 272  Q
    |||||||||||| || ||||| ||||||||  | || || |||||||| || |||| |||| |||||| ||| | ||| || ||||||||||||| ||||    
T  10495149 tcctcgtggccagcccttggaggtatgcttttccattgatgaaaatggcatcctgactgttactgctaaggatatatctacaggcaatatgaacgcgatc 10495248  T
Q  273 acgataaccaacgacaaagaaaggt 297  Q
    || || || || |||||||||||||    
T  10495249 accattactaatgacaaagaaaggt 10495273  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 297
Target Start/End: Complemental strand, 17267324 - 17267202
Alignment:
Q  175 ctcgtggccatcctttggatgtatgcttcactatagacgaaaatggtatactgaatgtttctgctatggaaaaatccactggcaatatgaacgagatcac 274  Q
    ||||||||||| |||| |||||||||||   | | ||  ||||||||||  |||  |||||||||||||| ||||||||||| | || ||| ||||| ||    
T  17267324 ctcgtggccattcttttgatgtatgctttgatgtcgatcaaaatggtattttgacagtttctgctatggacaaatccactggtagtaagaatgagattac 17267225  T
Q  275 gataaccaacgacaaagaaaggt 297  Q
     |||||||| ||||||| |||||    
T  17267224 aataaccaatgacaaaggaaggt 17267202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 199
Target Start/End: Complemental strand, 8658831 - 8658727
Alignment:
Q  95 tgtttatgagggcgagagaacaagagccgtggacaacaatctgctaggttcttttattctttcttgtcttccaggtactcctcgtggccatcctttggat 194  Q
    |||||| ||||| |||||| |||||||  | |||||||||||||| ||||| || |  |||||||| | ||||||| |||||||||||  ||| |||||     
T  8658831 tgtttacgagggtgagagagcaagagcgctagacaacaatctgcttggttcgttcaaactttcttgccgtccaggtgctcctcgtggcactcccttggag 8658732  T
Q  195 gtatg 199  Q
    |||||    
T  8658731 gtatg 8658727  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 8646351 - 8646284
Alignment:
Q  89 tattaatgtttatgagggcgagagaacaagagccgtggacaacaatctgctaggttcttttattcttt 156  Q
    ||||| |||||||||||| |||||| |||||||    |||||||||||||| |||||||||| |||||    
T  8646351 tattattgtttatgagggtgagagagcaagagcaagtgacaacaatctgcttggttcttttaatcttt 8646284  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 68 - 295
Target Start/End: Original strand, 16658193 - 16658420
Alignment:
Q  68 agataaccattgcagtgtctatattaatgtttatgagggcgagagaacaagagccgtggacaacaatctgctaggttcttttattctttcttgtcttcca 167  Q
    ||||||||| ||||  ||||  ||||||||||||||||| |||||| ||||||| |  ||||| |||||||| |||| ||| |  ||||||||  |||||    
T  16658193 agataaccaatgcaaagtctcaattaatgtttatgagggtgagagagcaagagctgctgacaataatctgctcggttttttcagcctttcttgcgttcca 16658292  T
Q  168 ggtactcctcgtggccatcctttggatgtatgcttcactatagacgaaaatggtatactgaatgtttctgctatggaaaaatccactggcaatatgaacg 267  Q
    ||| ||||||| ||||| || || |||||||| ||     | || ||||||||||| || | ||||||||||| ||||  ||| || || ||||  |||     
T  16658293 ggtgctcctcggggccaacccttagatgtatgttttgacctcgatgaaaatggtatcctaactgtttctgctaaggaagtatctacaggaaatacaaaca 16658392  T
Q  268 agatcacgataaccaacgacaaagaaag 295  Q
    ||||||| |||||||| || ||||||||    
T  16658393 agatcaccataaccaatgaaaaagaaag 16658420  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 297
Target Start/End: Original strand, 16662726 - 16662897
Alignment:
Q  126 gacaacaatctgctaggttcttttattctttcttgtcttccaggtactcctcgtggccatcctttggatgtatgcttcactatagacgaaaatggtatac 225  Q
    ||||||||  |||| |||| |||||  |||||  |||||||| ||  ||||||||||||||| ||||||||||||||  |||| || ||||| || ||      
T  16662726 gacaacaacatgcttggtttttttaggctttccggtcttccaagtgttcctcgtggccatcccttggatgtatgctttgctatcgatgaaaacggcatct 16662825  T
Q  226 tgaatgtttctgctatggaaaaatccactggcaatatgaacgagatcacgataaccaacgacaaagaaaggt 297  Q
    | | |||||| ||   ||||| |||||| || | || ||| ||||||||||||||||| |||||||||||||    
T  16662826 taactgtttcagcagaggaaagatccaccggaagtaagaatgagatcacgataaccaatgacaaagaaaggt 16662897  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 297
Target Start/End: Complemental strand, 15594388 - 15594304
Alignment:
Q  213 gaaaatggtatactgaatgtttctgctatggaaaaatccactggcaatatgaacgagatcacgataaccaacgacaaagaaaggt 297  Q
    ||||||| ||| |||| ||||||||  | ||||| ||||||||||||||  ||||||||||| |||||||| |||||||||||||    
T  15594388 gaaaatgctatcctgactgtttctgtgaaggaaacatccactggcaatacaaacgagatcacaataaccaatgacaaagaaaggt 15594304  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 158
Target Start/End: Complemental strand, 43744291 - 43744221
Alignment:
Q  88 atattaatgtttatgagggcgagagaacaagagccgtggacaacaatctgctaggttcttttattctttct 158  Q
    ||||||| ||||||||||| |||||| |||||||    |||||||||||||| |||||||||  |||||||    
T  43744291 atattaaagtttatgagggtgagagagcaagagcaagtgacaacaatctgcttggttcttttgctctttct 43744221  T

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