View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4596-Insertion-1 (Length: 1130)
Name: NF4596-Insertion-1
Description: NF4596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4596-Insertion-1 |
 | |
|
| [»] scaffold0217 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-147; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 34206183 - 34206487
Alignment:
| Q |
8 |
ctgatgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34206183 |
ctgatgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttca |
34206282 |
T |
|
| Q |
108 |
ttttgtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacg-g |
206 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34206283 |
ttttgtccacaacctgtaacacaaaattgagtatcataagaaataacacctcgtcgcaccaagttatcctttgttggccatttattgcggagaagacgcc |
34206382 |
T |
|
| Q |
207 |
acgcgcaaatagaaactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcatcttctgccgcatgagcatttgatacac |
306 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34206383 |
acgcgcaaatagagactttcagaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcatctcctgccgcatgagcatttgatacac |
34206482 |
T |
|
| Q |
307 |
accac |
311 |
Q |
| |
|
||||| |
|
|
| T |
34206483 |
accac |
34206487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 4163892 - 4164196
Alignment:
| Q |
8 |
ctgatgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttca |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4163892 |
ctgatgaggatccacaaaaaacacaccgatccaagttttaatttgctgccagagagctccaaaaataggacaatgaataattaagaggtctattgtttca |
4163991 |
T |
|
| Q |
108 |
ttttgtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacg-g |
206 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4163992 |
ttttgtccacaacctgtaacacaaaattgagtatcataagaaataacacctcgtcgcaccaagttatcctttgttggccatctattgcggagaagacgcc |
4164091 |
T |
|
| Q |
207 |
acgcgcaaatagaaactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcatcttctgccgcatgagcatttgatacac |
306 |
Q |
| |
|
|||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
4164092 |
acgcccaaatagagactttcagaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcctctcctgccgcatgagcatttgatacac |
4164191 |
T |
|
| Q |
307 |
accac |
311 |
Q |
| |
|
||||| |
|
|
| T |
4164192 |
accac |
4164196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 43109191 - 43108951
Alignment:
| Q |
8 |
ctgatgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43109191 |
ctgatgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttca |
43109092 |
T |
|
| Q |
108 |
ttttgtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacg-g |
206 |
Q |
| |
|
||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43109091 |
ttttgtccacatcctgtaacacaaaattgagtatcataagaaataacacctcgtcgcaccaagttatcctttgttggccatctattgcggagaagacgcc |
43108992 |
T |
|
| Q |
207 |
acgcgcaaatagaaactttcaaaggagcactcttatgccac |
247 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
43108991 |
acgcgcaaatagagactttcagaggagcactcttatgccac |
43108951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 155; E-Value: 1e-81
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 45459295 - 45459633
Alignment:
| Q |
18 |
tccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttcattttgtccac |
117 |
Q |
| |
|
|||||| |||||| ||| ||||||||||||||||||||||| | | ||||||||||||||||||||||||||||| || ||||||||||||| ||||| |
|
|
| T |
45459295 |
tccacagaaaacagaccaatccaagttttaatttgttgccataagtcgccaaaaataggacaatgaataattaagtgatcaattgtttcattttttccac |
45459394 |
T |
|
| Q |
118 |
aacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacg-gacgcgcaaat |
216 |
Q |
| |
|
| ||| |||| || ||||| | ||||| || |||||||||||| | |||||| |||||||||||||||||||||||||||| |||||| | |||||||| |
|
|
| T |
45459395 |
atcctgtaacgcataattgggtatcattagtaataacacctcgccgcaccaaattatcctttgttggccatctattgcggaaaagacgccaagcgcaaat |
45459494 |
T |
|
| Q |
217 |
agaaactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcatcttctgccgcatgagcatttgatacacaccaccaata |
316 |
Q |
| |
|
| |||||||||||||| ||||||||||||| ||||||||||||| |||| | |||||||||| |||||||||||||||||||| |||| |||||||| |
|
|
| T |
45459495 |
ataaactttcaaaggaacactcttatgccaaggagcatccgaaatgacgttgtggttgtgcatctcctgccgcatgagcatttgatccacatcaccaata |
45459594 |
T |
|
| Q |
317 |
ttgggccgccaaagccaaacatctcattcagtatcctgc |
355 |
Q |
| |
|
|| || ||||||||||| || ||| |||||| |||||| |
|
|
| T |
45459595 |
ttaggtcgccaaagccagacttctggttcagtttcctgc |
45459633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 78 - 311
Target Start/End: Complemental strand, 45845563 - 45845329
Alignment:
| Q |
78 |
caatgaataattaagtggtctattgtttcattttgtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcct |
177 |
Q |
| |
|
|||||||||||||| || | ||||||||||||||| ||||| ||| ||||| ||||| |||| | |||| | ||||| | |||||||||||||| |
|
|
| T |
45845563 |
caatgaataattaaatgatttattgtttcattttgaccacatcctgatacacacaattggtcatcagtaataatagcgcctcgacgcaccaagttatcct |
45845464 |
T |
|
| Q |
178 |
ttgttggccatctattgcggagaagacgg-acgcgcaaatagaaactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtg |
276 |
Q |
| |
|
|||| |||||||||||| | | ||||| |||||| |||||| |||||| ||||| ||| |||||||| || || |||||||||||||| || ||| |
|
|
| T |
45845463 |
ttgtcggccatctattgtgaaagagacgccacgcgctaatagagactttctaaggaacacctttatgccaaggtgccaccgaaacaacgtcacgatcgtg |
45845364 |
T |
|
| Q |
277 |
catcttctgccgcatgagcatttgatacacaccac |
311 |
Q |
| |
|
||||| ||| | ||||||||||||||||| ||||| |
|
|
| T |
45845363 |
catctcctgtctcatgagcatttgatacataccac |
45845329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 355
Target Start/End: Original strand, 4164212 - 4164258
Alignment:
| Q |
309 |
caccaatattgggccgccaaagccaaacatctcattcagtatcctgc |
355 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4164212 |
caccaatgttgggccgccaaagccaaacatctgattcagtatcctgc |
4164258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 355
Target Start/End: Original strand, 34206503 - 34206549
Alignment:
| Q |
309 |
caccaatattgggccgccaaagccaaacatctcattcagtatcctgc |
355 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34206503 |
caccaatgttgggccgccaaagccaaacatctgattcagtatcctgc |
34206549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 837 - 898
Target Start/End: Complemental strand, 22710678 - 22710616
Alignment:
| Q |
837 |
tgcaatttggacgtgatatt-agaaactatatatttaagctttagctaaaacgcgtgttagag |
898 |
Q |
| |
|
|||||||||||||||||||| | || ||||||||| |||||| |||| ||||||| ||||||| |
|
|
| T |
22710678 |
tgcaatttggacgtgatattgaaaagctatatattcaagcttaagctgaaacgcgcgttagag |
22710616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 257; Significance: 1e-142; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 16896862 - 16896558
Alignment:
| Q |
8 |
ctgatgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttca |
107 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16896862 |
ctgatgaggatccacaaaaaacacaccaatccaagttttaatttgttgccagagagcaccaaaaataggacaattaataattaagtggtctattgtttca |
16896763 |
T |
|
| Q |
108 |
ttttgtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacg-g |
206 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16896762 |
ttttgtccacaacctgtaacacaaaattgagaatcataagaaataacacctcgtcgcaccaagttatcctttgttgaccatctattgcggagaagacgcc |
16896663 |
T |
|
| Q |
207 |
acgcgcaaatagaaactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcatcttctgccgcatgagcatttgatacac |
306 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
16896662 |
acgcgcaaatagagactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgtatctcctgccgcatgagcatttgatacac |
16896563 |
T |
|
| Q |
307 |
accac |
311 |
Q |
| |
|
||||| |
|
|
| T |
16896562 |
accac |
16896558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 30936946 - 30936642
Alignment:
| Q |
8 |
ctgatgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttca |
107 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30936946 |
ctgatgaggatccacaaaaaatacaccgatccaagttttaatttgttgccagagagcaccaaaaataggacaatgaataattaagtggtctattgtttca |
30936847 |
T |
|
| Q |
108 |
ttttgtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacg-g |
206 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30936846 |
ttttgtccacaacctgtaacacaaaattgagaatcataagaaataacacctcgtcgcaccaagttatcctttgttggccatctattgcggagaagacgcc |
30936747 |
T |
|
| Q |
207 |
acgcgcaaatagaaactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcatcttctgccgcatgagcatttgatacac |
306 |
Q |
| |
|
|| |||||||||| ||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30936746 |
acacgcaaatagagacttttagaggagcactcttatgccacggagcattcgaaacaacgtcataattgtgcatctcttgccgcatgagcatttgatacac |
30936647 |
T |
|
| Q |
307 |
accac |
311 |
Q |
| |
|
||||| |
|
|
| T |
30936646 |
accac |
30936642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 174; E-Value: 5e-93
Query Start/End: Original strand, 9 - 311
Target Start/End: Original strand, 19232940 - 19233222
Alignment:
| Q |
9 |
tgatgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttcat |
108 |
Q |
| |
|
||||||||||||| | ||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19232940 |
tgatgaggatccatagaaaacacgccaatccaagttttaatttgttgccagagattaccaaaaataggacaatgaataattaagtggtctattgtttcat |
19233039 |
T |
|
| Q |
109 |
tttgtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacggac |
208 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
19233040 |
tttgtccacaacctgtaacacataattgagaatcatgagaaataacatctcgtcacaccaagttatcctttgttggcc--------------------ac |
19233119 |
T |
|
| Q |
209 |
gcgcaaatagaaactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcatcttctgccgcatgagcatttgatacacac |
308 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19233120 |
gcgcaaatagagactttcaaaggagcactcttatgccacggagcatccgaaccaacatcatagttgtgcatctcctgccgcatgagcatttgatacacac |
19233219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 12 - 311
Target Start/End: Original strand, 11583919 - 11584219
Alignment:
| Q |
12 |
tgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttcatttt |
111 |
Q |
| |
|
|||||||||||| |||||| ||| |||||||| |||||||| ||||| ||| | || ||||||||||||||||| || ||||| |||||||||||||||| |
|
|
| T |
11583919 |
tgaggatccacagaaaacagaccaatccaagtcttaatttgctgccaaagatcacccaaaataggacaatgaatgatcaagtgatctattgtttcatttt |
11584018 |
T |
|
| Q |
112 |
gtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagac-ggacgc |
210 |
Q |
| |
|
| ||||| | | ||||| | ||||| ||||||| |||||||||||| ||| ||||||||||||||||||||| ||||||||| ||||||||| || | |
|
|
| T |
11584019 |
ggccacatcttgtaacaaataattgggaatcattagaaataacaccctgtcgcaccaagttatcctttgttggacatctattgaggagaagacaccacac |
11584118 |
T |
|
| Q |
211 |
gcaaatagaaactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcatcttctgccgcatgagcatttgatacacacca |
310 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||| |||| ||||||||| ||||| | ||||| |||| ||| ||| |||||||||||||||||||| |
|
|
| T |
11584119 |
gcaaataaaaactttcaaaggagcactcctatgccaaggagaatccgaaacgacgtcgtggttgtgaatctcctgtcgcgtgagcatttgatacacacca |
11584218 |
T |
|
| Q |
311 |
c |
311 |
Q |
| |
|
| |
|
|
| T |
11584219 |
c |
11584219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 40970077 - 40970219
Alignment:
| Q |
18 |
tccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttcattttgtccac |
117 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||| | | |||||||||||||||||||||||||| || || ||||||||||||| ||||| |
|
|
| T |
40970077 |
tccacagaaaacacaccaatccaagttttaatttgttgccataagtcgccaaaaataggacaatgaataattaaatgatcaattgtttcattttttccac |
40970176 |
T |
|
| Q |
118 |
aacctataacacaaaattgagaatcataagaaataacacctcg |
160 |
Q |
| |
|
| ||| |||| || ||||| | ||||| || || ||||||||| |
|
|
| T |
40970177 |
atcctgtaacgcataattgggtatcattagtaacaacacctcg |
40970219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 31644784 - 31644853
Alignment:
| Q |
9 |
tgatgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggac |
78 |
Q |
| |
|
||||||||||||||| ||||||| || ||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
31644784 |
tgatgaggatccacagaaaacacgccaatccaagttttaatttgttgccagagatcaccaaaaataggac |
31644853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 50542941 - 50542847
Alignment:
| Q |
9 |
tgatgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgt |
103 |
Q |
| |
|
|||| |||||||||| ||||||| | |||||||||||||||||||| || ||| | ||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
50542941 |
tgattaggatccacagaaaacacgtcaatccaagttttaatttgttgtcaaagatcaccaaaaacaggacaacaaataattaagtggtctattgt |
50542847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 145 - 304
Target Start/End: Original strand, 33981007 - 33981167
Alignment:
| Q |
145 |
aagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacg-gacgcgcaaatagaaactttcaaaggagcactcttatg |
243 |
Q |
| |
|
|||||||||||||||| | ||||||||| |||||||| |||||||||||||||| ||||| | |||||||||||||||| |||||| || | || || |
|
|
| T |
33981007 |
aagaaataacacctcgacgcaccaagttgtcctttgtcggccatctattgcggatgagacgccaaacgcaaatagaaacttttaaaggaacatttttgtg |
33981106 |
T |
|
| Q |
244 |
ccacggagcatccgaaacaacgtcataattgtgcatcttctgccgcatgagcatttgatac |
304 |
Q |
| |
|
||| || |||| |||| | || |||| || || |||| ||||| ||| |||||||||||| |
|
|
| T |
33981107 |
ccatggtgcattcgaagctacatcatcatcctgtatctcctgcctcataagcatttgatac |
33981167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 16896542 - 16896496
Alignment:
| Q |
309 |
caccaatattgggccgccaaagccaaacatctcattcagtatcctgc |
355 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16896542 |
caccaatgttgggccgccaaagccaaacatctgattcagtatcctgc |
16896496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 231
Target Start/End: Complemental strand, 19652975 - 19652820
Alignment:
| Q |
77 |
acaatgaataattaagtggtctattgtttcattttgtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcc |
176 |
Q |
| |
|
||||||||| |||||||| ||||||| ||| | ||| ||||||||| || || | |||| |||| ||||||||||| | | ||||||||||||| |
|
|
| T |
19652975 |
acaatgaattattaagtgatctattgattcttgttgaccacaacctgaaatgcacagttgattttcatgagaaataacactgccacgcaccaagttatcc |
19652876 |
T |
|
| Q |
177 |
tttgttggccatctattgcggagaagacg-gacgcgcaaatagaaactttcaaagg |
231 |
Q |
| |
|
||||| |||||||||||||||| ||||| | ||||||||||| ||||| ||||| |
|
|
| T |
19652875 |
tttgtcggccatctattgcggatgagacgccaagcgcaaatagagacttttaaagg |
19652820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 11584243 - 11584281
Alignment:
| Q |
317 |
ttgggccgccaaagccaaacatctcattcagtatcctgc |
355 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11584243 |
ttgggccgccaaagccaaacatctaattcagtatcctgc |
11584281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 309 - 355
Target Start/End: Original strand, 19233238 - 19233284
Alignment:
| Q |
309 |
caccaatattgggccgccaaagccaaacatctcattcagtatcctgc |
355 |
Q |
| |
|
||||||| ||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
19233238 |
caccaatgttgggccgccaaagccagacatctgattcagtatcctgc |
19233284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 307
Target Start/End: Complemental strand, 10386200 - 10385899
Alignment:
| Q |
8 |
ctgatgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttca |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10386200 |
ctgatgaggatccacaaaaaacacaccgatccaagttttaatttgatgccagagagctccaaaaataggacaatgaataattaagaggtctattgtttca |
10386101 |
T |
|
| Q |
108 |
ttttgtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacg-g |
206 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10386100 |
ttttgtccacaacctgtaacacaaaattgagtatcataagaaataacacctcgtcgcaccaagttatcctttgttggccatctattgcggagaagacgcc |
10386001 |
T |
|
| Q |
207 |
acgcgcaaatagaaactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcatcttctgccgca-tgagcatttgataca |
305 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| |
|
|
| T |
10386000 |
acgcgcaaatagaaactttcagaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcctctcctgccgcacggagcatttgataca |
10385901 |
T |
|
| Q |
306 |
ca |
307 |
Q |
| |
|
|| |
|
|
| T |
10385900 |
ca |
10385899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 145 - 304
Target Start/End: Original strand, 31459066 - 31459226
Alignment:
| Q |
145 |
aagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacg-gacgcgcaaatagaaactttcaaaggagcactcttatg |
243 |
Q |
| |
|
|||||||||||||||| | ||||||||| |||||||| |||||||||||||||| ||||| | |||||||||||||||| |||||| || | || || |
|
|
| T |
31459066 |
aagaaataacacctcgacgcaccaagttgtcctttgtcggccatctattgcggatgagacgccaaacgcaaatagaaacttttaaaggaacatttttgtg |
31459165 |
T |
|
| Q |
244 |
ccacggagcatccgaaacaacgtcataattgtgcatcttctgccgcatgagcatttgatac |
304 |
Q |
| |
|
||| || |||| |||| |||| |||| || || |||| ||||| ||| |||||||||||| |
|
|
| T |
31459166 |
ccatggtgcattcgaagcaacatcatcatcctgtatctcctgcctcataagcatttgatac |
31459226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 231
Target Start/End: Complemental strand, 36193016 - 36192861
Alignment:
| Q |
77 |
acaatgaataattaagtggtctattgtttcattttgtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcc |
176 |
Q |
| |
|
||||||||| |||||||| ||||||||||| | ||| |||||||| || ||| | |||| |||| ||||||||||||||| | |||||| || ||| |
|
|
| T |
36193016 |
acaatgaattattaagtgatctattgtttcttgttgaccacaacccgaaatacatagttgattttcattagaaataacacctcgacgcaccaaattgtcc |
36192917 |
T |
|
| Q |
177 |
tttgttggccatctattgcggagaagacg-gacgcgcaaatagaaactttcaaagg |
231 |
Q |
| |
|
||||| |||||||||||||||| ||||| | ||||||||||| ||||| ||||| |
|
|
| T |
36192916 |
tttgtcggccatctattgcggatgagacgccaagcgcaaatagagacttttaaagg |
36192861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 35368085 - 35368028
Alignment:
| Q |
141 |
tcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcgga |
198 |
Q |
| |
|
|||| ||||||||||||||| | ||||||||| |||||||| |||||||||||||||| |
|
|
| T |
35368085 |
tcatgagaaataacacctcgacgcaccaagttgtcctttgtcggccatctattgcgga |
35368028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 48434136 - 48434191
Alignment:
| Q |
141 |
tcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcg |
196 |
Q |
| |
|
|||| ||||||||||||||| | ||||||||| |||||||| |||||||||||||| |
|
|
| T |
48434136 |
tcattagaaataacacctcgacgcaccaagttgtcctttgtcggccatctattgcg |
48434191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 225
Target Start/End: Original strand, 32641793 - 32641942
Alignment:
| Q |
77 |
acaatgaataattaagtggtctattgtttcattttgtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcc |
176 |
Q |
| |
|
||||||||| |||||||| |||| ||||| | ||| ||||||||| |||||| || ||| ||| |||||||||||| || | || ||||| ||| |
|
|
| T |
32641793 |
acaatgaatgattaagtgatctaaagtttcttgttgaccacaacctgaaacacacaactgattttcaacagaaataacaccacgacgcattaagttgtcc |
32641892 |
T |
|
| Q |
177 |
tttgttggccatctattgcggagaagacg-gacgcgcaaatagaaacttt |
225 |
Q |
| |
|
||||| |||||||||||||||| ||||| | ||||||||||||||||| |
|
|
| T |
32641893 |
tttgtcggccatctattgcggatgagacgccatgcgcaaatagaaacttt |
32641942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 245; Significance: 1e-135; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 38948164 - 38947860
Alignment:
| Q |
8 |
ctgatgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttca |
107 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38948164 |
ctgatgaggatccacagaaaacacaccaatccaagttttaatttgttgccagagatcaccaaaaataggacaatgaataattaagtggtctattgtttca |
38948065 |
T |
|
| Q |
108 |
ttttgtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacg-g |
206 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38948064 |
ttttgtccacaacctgtaacacataattgagaatcatgagaaataacacctcgtcgcaccaagttatcctttgttggccatctattgcggagaagacgcc |
38947965 |
T |
|
| Q |
207 |
acgcgcaaatagaaactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcatcttctgccgcatgagcatttgatacac |
306 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38947964 |
acgagcaaatagagactttcaaaggagcactcttataccacggagcatccgaaacaacgtcataattgtgcatctcctgccgcatgagcatttgatacac |
38947865 |
T |
|
| Q |
307 |
accac |
311 |
Q |
| |
|
||||| |
|
|
| T |
38947864 |
accac |
38947860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 53679400 - 53679096
Alignment:
| Q |
8 |
ctgatgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttca |
107 |
Q |
| |
|
|||||||||||||||| ||||||| || ||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53679400 |
ctgatgaggatccacataaaacacgccaatccaagttttaatttgttgccaaagatcaccaaaaataggacaatgaataattaagtggtctattgtttca |
53679301 |
T |
|
| Q |
108 |
ttttgtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacg-g |
206 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
53679300 |
ttttgtccacaacctgtaacacataattgagaatcatgagaaataacacctcgtcgcaccaagttatccttagttggccatctattgcggagaacacgcc |
53679201 |
T |
|
| Q |
207 |
acgcgcaaatagaaactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcatcttctgccgcatgagcatttgatacac |
306 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||| ||||||||||||||| |
|
|
| T |
53679200 |
acgcgcaaatagagactttcaacggagcactcttatgccacggagcatccgagacaacgtcatagttgtgcatctcctgccgcaagagcatttgatacac |
53679101 |
T |
|
| Q |
307 |
accac |
311 |
Q |
| |
|
||||| |
|
|
| T |
53679100 |
accac |
53679096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 151; E-Value: 3e-79
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 19836998 - 19837292
Alignment:
| Q |
18 |
tccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttcattttgtccac |
117 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| ||||||| | | ||||||||| |||||||||||||||| || || ||||||||||||| ||||| |
|
|
| T |
19836998 |
tccacagaaaacacaccaatccaagttttaattcgttgccataagtcgccaaaaataagacaatgaataattaaatgatcaattgtttcattttttccac |
19837097 |
T |
|
| Q |
118 |
aacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacg-gacgcgcaaat |
216 |
Q |
| |
|
| ||| |||| || ||||| | ||||| || |||||||||||| | |||||| ||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
19837098 |
atcctctaacgcataattgggtatcattagtaataacacctcgccgcaccaaattatcctttgttggccatctattgcggagaagacgccaagcgcaaat |
19837197 |
T |
|
| Q |
217 |
agaaactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcatcttctgccgcatgagcatttgatacacaccac |
311 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||| ||||| | ||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
19837198 |
agaaactttcaaaggaacactcttatgccaaggagcatccgaaacgacgtcgtggttgtgcacctcctgccgcatgagcatttgatacacaccac |
19837292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 134; E-Value: 4e-69
Query Start/End: Original strand, 15 - 311
Target Start/End: Complemental strand, 19309867 - 19309570
Alignment:
| Q |
15 |
ggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttcattttgtc |
114 |
Q |
| |
|
|||||||| |||| ||||| ||||||||||||||||||||||| ||| | |||||||||||||||||||||||||| || |||| ||||||||||| | |
|
|
| T |
19309867 |
ggatccacggaaaatacaccaatccaagttttaatttgttgccaaagaccaccaaaaataggacaatgaataattaaatgatctaaagtttcattttggc |
19309768 |
T |
|
| Q |
115 |
cacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacg-gacgcgca |
213 |
Q |
| |
|
|||| ||| ||||||| ||||| ||||||| ||| ||||||||||| | ||||||||||||||||||||| ||||||||||| | ||||| | || || |
|
|
| T |
19309767 |
cacatcctgtaacacacaattgtgaatcatgagatataacacctcgccgcaccaagttatcctttgttggtcatctattgcgaaagagacgccatgcaca |
19309668 |
T |
|
| Q |
214 |
aatagaaactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcatcttctgccgcatgagcatttgatacacaccac |
311 |
Q |
| |
|
|||||| |||||||||||| ||||||| ||||| |||||||||||||| | || | |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19309667 |
aatagagactttcaaaggaacactcttgtgccaaggagcatccgaaacgatatcgtggttgtgcatctcttgccgcatgagcatttgatacacaccac |
19309570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 188 - 311
Target Start/End: Complemental strand, 43470004 - 43469880
Alignment:
| Q |
188 |
tctattgcggagaagacgg-acgcgcaaatagaaactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcatcttctgc |
286 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| | || || ||||||||| |
|
|
| T |
43470004 |
tctattgtggagaagacgccacgcgcaaatagaaactttcaaaggaacactcttatgccaaggagcatccgaaacaacgtcgtggttatgtatcttctgc |
43469905 |
T |
|
| Q |
287 |
cgcatgagcatttgatacacaccac |
311 |
Q |
| |
|
| || |||||||||||||||||||| |
|
|
| T |
43469904 |
cacacgagcatttgatacacaccac |
43469880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 8933013 - 8932837
Alignment:
| Q |
12 |
tgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttcatttt |
111 |
Q |
| |
|
|||||||||| | |||||||||| |||||||| |||||||||||||| ||| |||||||||||| | || || |||| || |||||||||||||||| |
|
|
| T |
8933013 |
tgaggatccaaataaaacacaccaatccaagtcttaatttgttgccaaagattgccaaaaataggatagtggattattatatgatctattgtttcatttt |
8932914 |
T |
|
| Q |
112 |
gtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccat |
188 |
Q |
| |
|
| ||||| ||| ||||||| ||||| || ||| | ||||||||||||| ||| |||||||||||||| |||||| |
|
|
| T |
8932913 |
ggccacatcctgtaacacacaattgggagtcactaattataacacctcgtcgcacgaagttatcctttgtcggccat |
8932837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 43470092 - 43469997
Alignment:
| Q |
8 |
ctgatgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgt |
103 |
Q |
| |
|
||||||||||||||| |||||||||| || |||||||||||||||||||| ||| | |||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
43470092 |
ctgatgaggatccacggaaaacacaccaattcaagttttaatttgttgccaaagatcaccaaaaataggataatgaataattatgtggtctattgt |
43469997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 66 - 269
Target Start/End: Original strand, 7446672 - 7446876
Alignment:
| Q |
66 |
ccaaaaataggacaatgaataattaagtggtctattgtttcattttgtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcaca |
165 |
Q |
| |
|
||||||||| ||||||||| |||||||| ||||||||||| | ||| ||||| ||| || || | |||| |||| ||||||||||||||| | || |
|
|
| T |
7446672 |
ccaaaaatattacaatgaattattaagtgatctattgtttcttgttgaccacatcctgaaatgcatagttgattttcattagaaataacacctcgacgca |
7446771 |
T |
|
| Q |
166 |
ccaagttatcctttgttggccatctattgcggagaagacg-gacgcgcaaatagaaactttcaaaggagcactcttatgccacggagcatccgaaacaac |
264 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| ||||| | ||||||||||| ||||||||||| || | || ||||| || ||||||||| |||| |
|
|
| T |
7446772 |
ccaagttgtcctttgtcggccatctattgcggatgagacgccaagcgcaaatagagactttcaaagggacatttttgtgccatggtgcatccgaagcaac |
7446871 |
T |
|
| Q |
265 |
gtcat |
269 |
Q |
| |
|
|||| |
|
|
| T |
7446872 |
atcat |
7446876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 15 - 310
Target Start/End: Original strand, 21479513 - 21479809
Alignment:
| Q |
15 |
ggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttcattttgtc |
114 |
Q |
| |
|
|||||||||||| ||||||| | |||| |||| | |||||||| |||| |||||||||||||||||||||||||| || ||| ||| |||| |||| | |
|
|
| T |
21479513 |
ggatccacaaaatacacaccaagccaatttttcacgtgttgccaaagagaaccaaaaataggacaatgaataattaaatgatctgttgattcaatttgac |
21479612 |
T |
|
| Q |
115 |
cacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacg-gacgcgca |
213 |
Q |
| |
|
|||| ||| |||||| | |||||| || | ||||||| || || | | ||||| |||||||||||||| |||||||| | ||||| || | || |
|
|
| T |
21479613 |
cacaccctgaaacacacagttgagagtccaatgaaataattccacgacgccttaagttgtcctttgttggccacctattgcgtaatagacgccacacaca |
21479712 |
T |
|
| Q |
214 |
aatagaaactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcatcttctgccgcatgagcatttgatacacacca |
310 |
Q |
| |
|
|||||| || ||||||||| |||| ||||||||| || ||||| | | || | | |||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
21479713 |
aatagagaccttcaaaggaacacttttatgccacaccgcgtccgagaagtcatcgtgaaagtgcatctcctgcctcatgagcatttgatacacacca |
21479809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 237
Target Start/End: Complemental strand, 25459177 - 25459088
Alignment:
| Q |
149 |
aataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacgg-acgcgcaaatagaaactttcaaaggagcact |
237 |
Q |
| |
|
|||||||||||| | |||||| ||||||||||| ||||||||||| || | |||||| | |||||||||||||||||||||||| |||| |
|
|
| T |
25459177 |
aataacacctcgccgcaccaaattatcctttgtcggccatctattacgaaagagacggcatgcgcaaatagaaactttcaaaggaacact |
25459088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 264
Target Start/End: Complemental strand, 10009408 - 10009220
Alignment:
| Q |
77 |
acaatgaataattaagtggtctattgtttcattttgtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcc |
176 |
Q |
| |
|
||||||||| |||||||| ||||||||||| | ||| |||||||| || |||| ||| |||| |||||||||| |||| | |||||| || ||| |
|
|
| T |
10009408 |
acaatgaattattaagtgatctattgtttcttgttgaccacaacccgaaatgcaaagctgattttcattagaaataacagctcgacgcaccaaattgtcc |
10009309 |
T |
|
| Q |
177 |
tttgttggccatctattgcggagaagacg-gacgcgcaaatagaaactttcaaaggagcactcttatgccacggagcatccgaaacaac |
264 |
Q |
| |
|
||||| |||||||||||||||| ||||| | ||||||||||| ||||| |||||| || | || ||||| || |||||| ||||||| |
|
|
| T |
10009308 |
tttgtcggccatctattgcggatgagacgccaagcgcaaatagagacttttaaaggaacatttttgtgccatggtgcatccaaaacaac |
10009220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 38947844 - 38947798
Alignment:
| Q |
309 |
caccaatattgggccgccaaagccaaacatctcattcagtatcctgc |
355 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38947844 |
caccaatgttgggccgccaaagccaaacatctgattcagtatcctgc |
38947798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 14545187 - 14545153
Alignment:
| Q |
51 |
tgttgccagagagctccaaaaataggacaatgaat |
85 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
14545187 |
tgttgccagagagctccaaaaataggacaatgaat |
14545153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 53679080 - 53679034
Alignment:
| Q |
309 |
caccaatattgggccgccaaagccaaacatctcattcagtatcctgc |
355 |
Q |
| |
|
||||||| ||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
53679080 |
caccaatgttgggccgccaaagccagacatctgattcagtatcctgc |
53679034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 38655101 - 38655146
Alignment:
| Q |
147 |
gaaataacacctcgtcacaccaagttatcctttgttggccatctat |
192 |
Q |
| |
|
|||||||||||||| | ||||||||| |||||||| |||||||||| |
|
|
| T |
38655101 |
gaaataacacctcgacgcaccaagttgtcctttgtcggccatctat |
38655146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 44940083 - 44940387
Alignment:
| Q |
8 |
ctgatgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttca |
107 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44940083 |
ctgatgaggatccacagaaaacacaccaatccaagttttaatttgttgccagagagcaccaaaaataggacaatgaataattaagtagtctattgtttca |
44940182 |
T |
|
| Q |
108 |
ttttgtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacg-g |
206 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| |
|
|
| T |
44940183 |
ttttgtccacaacatgtaacacaaaattgagaatcataagaaataacacctcgtcacaccaaattatcctttgctggtcatctattgcggagaagacgcc |
44940282 |
T |
|
| Q |
207 |
acgcgcaaatagaaactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcatcttctgccgcatgagcatttgatacac |
306 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44940283 |
acgcgcaaatagagactttcaaaggagcactcttatgccacggagcatccgaaacaatgtcataattgtgcatctcctgccgcatgagcatttgatacat |
44940382 |
T |
|
| Q |
307 |
accac |
311 |
Q |
| |
|
||||| |
|
|
| T |
44940383 |
accac |
44940387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 307
Target Start/End: Original strand, 79628 - 79928
Alignment:
| Q |
8 |
ctgatgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttca |
107 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79628 |
ctgatgaggatccacagaaaacacaccaatccaagttttaatttgttgccggagatcaccaaaaataggacaatgaataattaagtggtctattgtttca |
79727 |
T |
|
| Q |
108 |
ttttgtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacg-g |
206 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||| |
|
|
| T |
79728 |
ttttgtccacaacctgtaacacataattgagaatcatgagaaataacacctcgtcgcaccaagttatcctttgtaggccatttattacggagaagacgcc |
79827 |
T |
|
| Q |
207 |
acgcgcaaatagaaactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcatcttctgccgcatgagcatttgatacac |
306 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
79828 |
acgcgcaaatagagactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattatgcatctcctgccgcatgagcatttgatacac |
79927 |
T |
|
| Q |
307 |
a |
307 |
Q |
| |
|
| |
|
|
| T |
79928 |
a |
79928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 227; E-Value: 1e-124
Query Start/End: Original strand, 8 - 265
Target Start/End: Complemental strand, 3153525 - 3153267
Alignment:
| Q |
8 |
ctgatgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3153525 |
ctgatgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttca |
3153426 |
T |
|
| Q |
108 |
ttttgtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacg-g |
206 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3153425 |
ttttgtccacaacctgtaacacaaaattgagtatcataagaaataacacctcgtcgcaccaagttatcctttgttggccatctattgcggagaagacgcc |
3153326 |
T |
|
| Q |
207 |
acgcgcaaatagaaactttcaaaggagcactcttatgccacggagcatccgaaacaacg |
265 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3153325 |
acgcgcaaatagagactttcagaggagcactcttatgccacggagcatccgaaacaacg |
3153267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 410 - 564
Target Start/End: Original strand, 41231826 - 41231977
Alignment:
| Q |
410 |
atttgcatagttacatgcctggtaatttcagctagattcttcaataatctacaacatagacgggtccctttgatacgcggtatgcttagctagcaactcc |
509 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41231826 |
attttcatagttacatgcctggtaatttcagctagattcttcaataatctacaacatagacgggtccctttgatacgcggtatgcttagctatcaactcc |
41231925 |
T |
|
| Q |
510 |
atatggtctttagatttgatttttaactaaacttaatagctatcactcactactg |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41231926 |
atatggtctttagatttgatttttaactaaact---tagctatcactcactactg |
41231977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 724 - 850
Target Start/End: Original strand, 41232184 - 41232314
Alignment:
| Q |
724 |
ccattcaataataaaattcactatgattcagaggaaaacaattgagagaattcattccattccactaatgcttcgtttggttatatgt----tgtgttca |
819 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| | |
|
|
| T |
41232184 |
ccattcaataataaaattgactatgattgagaggaaaacaattgagagaattcattccattccactaatgcttcctttggttatatgttgtatgtgttta |
41232283 |
T |
|
| Q |
820 |
ctaattttgtgttccaatgcaatttggacgt |
850 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |
|
|
| T |
41232284 |
ctaattttgttttccaatgcaatttggacgt |
41232314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 560 - 635
Target Start/End: Original strand, 41232020 - 41232095
Alignment:
| Q |
560 |
tactgagactgctagctgctaagataagcatttagaagctaaatttggggattcattggatcctttcaattctttc |
635 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41232020 |
tactgagagtgctagctgctaagataagcatttagaagctaaatttggggattcattggatcctttcaattgtttc |
41232095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 846 - 994
Target Start/End: Original strand, 41233910 - 41234047
Alignment:
| Q |
846 |
gacgtgatattagaaactatatatttaagctttagctaaaacgcgtgttagaggtgattctactgtcaacacaaacacaggccaaattaggatattctat |
945 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||| | |||| |||||| ||||||| | | ||||||||||||||||| |
|
|
| T |
41233910 |
gacgtgatattagaaactatatatttaagcttcagctgaaacgtatcttagcggtgata-----------acaaacataaactaaattaggatattctat |
41233998 |
T |
|
| Q |
946 |
tactctatttgaacgtataaaatttacattgtatgtgttggttattacc |
994 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41233999 |
tactctatttgaacgtataaaatttacattgtatgtgttggttattacc |
41234047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 15 - 311
Target Start/End: Original strand, 14164253 - 14164550
Alignment:
| Q |
15 |
ggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttcattttgtc |
114 |
Q |
| |
|
|||||||| || ||||||| ||||||| ||||| || | ||| ||| | |||||||||| ||||||||| ||||| || ||||| ||||| | || | |
|
|
| T |
14164253 |
ggatccactgaatacacaccaatccaagacttaatatgcttccaaagatcaccaaaaatagtacaatgaattattaaatgatctatggtttcctgttcac |
14164352 |
T |
|
| Q |
115 |
cacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacgg-acgcgca |
213 |
Q |
| |
|
|||| ||| ||||| | |||| |||| || ||||||||| || | |||||| ||||||||||| |||||||||||| | | || || | ||||| |
|
|
| T |
14164353 |
cacatcctgagacacatagttgattttcattagtaataacaccgcgccgcaccaaattatcctttgtcggccatctattgtgaaagagtcgccaagcgca |
14164452 |
T |
|
| Q |
214 |
aatagaaactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcatcttctgccgcatgagcatttgatacacaccac |
311 |
Q |
| |
|
||||| |||||||||||| ||||||||||||| |||||||||| | || ||||| |||| |||| ||||| ||| ||||| ||||||||||||| |
|
|
| T |
14164453 |
gatagacactttcaaaggaacactcttatgccaaggagcatccgcagtgacatcatagctgtgtatctcctgcctcataagcatatgatacacaccac |
14164550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 309 - 359
Target Start/End: Original strand, 44940403 - 44940453
Alignment:
| Q |
309 |
caccaatattgggccgccaaagccaaacatctcattcagtatcctgcggga |
359 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44940403 |
caccaatgttgggccgccaaagccaaacatctgattcagtatcctgcggga |
44940453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 311
Target Start/End: Complemental strand, 39768415 - 39768118
Alignment:
| Q |
15 |
ggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttcattttgtc |
114 |
Q |
| |
|
|||||||||||| ||||||| | ||||| ||||| | ||||||||| ||||||| |||||||||||| |||| || ||||||||||||||||| | |
|
|
| T |
39768415 |
ggatccacaaaatacacaccaagccaagacttaataagctgccagagattgccaaaaagaggacaatgaattattatatgatctattgtttcattttggc |
39768316 |
T |
|
| Q |
115 |
cacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagac-ggacgcgca |
213 |
Q |
| |
|
|||| | |||||| ||||| ||| || || ||||||| ||| ||| |||||||||||||| | |||||||| || | |||| ||||||| |
|
|
| T |
39768315 |
cacattgtgaaacacacaattggttgtcaatagtaaaaacacctagtcgcactaagttatcctttgtcgatcatctattacgaaagagacaccacgcgca |
39768216 |
T |
|
| Q |
214 |
aatagaaactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcatcttctgccgcatgagcatttgatacacaccac |
311 |
Q |
| |
|
|||| |||||||||||| |||| |||||||| | || | |||||||| || | |||||||| | ||||| |||| |||||||||||||||||| |
|
|
| T |
39768215 |
aatatggactttcaaaggaacacttttatgccaagaagtcttggaaacaacatcgtggttgtgcatatcctgcctcatgggcatttgatacacaccac |
39768118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 23290204 - 23290278
Alignment:
| Q |
17 |
atccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaa |
91 |
Q |
| |
|
|||||||||| ||||||| | |||| |||||| |||||||| |||| |||||| ||||||||||||||||||| |
|
|
| T |
23290204 |
atccacaaaatacacaccaagccaatttttaacatgttgccaaagagaaccaaaattaggacaatgaataattaa |
23290278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 17931210 - 17931246
Alignment:
| Q |
275 |
tgcatcttctgccgcatgagcatttgatacacaccac |
311 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17931210 |
tgcatctcctgccgcatgagcatttgatacacaccac |
17931246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 237; Significance: 1e-130; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-130
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 1308954 - 1308650
Alignment:
| Q |
8 |
ctgatgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttca |
107 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1308954 |
ctgatgaggatccacagaaaacacaccaatccaagttttaatttgttgccagagagcaccaaaaataggacaatgaataattaagtggtctattgtttca |
1308855 |
T |
|
| Q |
108 |
ttttgtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacg-g |
206 |
Q |
| |
|
||||||||||||| | ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1308854 |
ttttgtccacaacatgtaacacataattgagaatcataagaaataacacctcgtcgcaccaagttatcctttgttggccatctattgtggagaagacgcc |
1308755 |
T |
|
| Q |
207 |
acgcgcaaatagaaactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcatcttctgccgcatgagcatttgatacac |
306 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||| || |
|
|
| T |
1308754 |
acgcacaaatagagactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataactgtgcatctcctgccgcaagagcatttgatatac |
1308655 |
T |
|
| Q |
307 |
accac |
311 |
Q |
| |
|
||||| |
|
|
| T |
1308654 |
accac |
1308650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 16467272 - 16467576
Alignment:
| Q |
8 |
ctgatgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttca |
107 |
Q |
| |
|
|||||||||||||||| ||||||| || |||||||||||||||||||| |||||| | ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
16467272 |
ctgatgaggatccacagaaaacacgccaatccaagttttaatttgttgacagagatcaccaaaaataggacaacgaataattaagtggtctattgtttca |
16467371 |
T |
|
| Q |
108 |
ttttgtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacg-g |
206 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
16467372 |
ttttgtccacaacctgtaacacataattgagaatcatgagaaataacacctcgtcgcaccaagttatcctttgttggccatttatttcggagaagacgcc |
16467471 |
T |
|
| Q |
207 |
acgcgcaaatagaaactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcatcttctgccgcatgagcatttgatacac |
306 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
16467472 |
acgcgcaaatagagactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcatatttgtgcatctcctgccgcatgagcatttgatacac |
16467571 |
T |
|
| Q |
307 |
accac |
311 |
Q |
| |
|
||||| |
|
|
| T |
16467572 |
accac |
16467576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 26711086 - 26711389
Alignment:
| Q |
8 |
ctgatgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttca |
107 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26711086 |
ctgatgaggatccacagaaaacacaccaatccaagttttaatttgttgccagagatcaccaaaaataggacaacgaataattaagtggtctattgtttca |
26711185 |
T |
|
| Q |
108 |
ttttgtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacg-g |
206 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26711186 |
ttttgtccacaacctgtaatacataattgagaatcatgagaaataaca-ctcgtcgcaccaagttatcctttgttggccatctattgcggagaagacgcc |
26711284 |
T |
|
| Q |
207 |
acgcgcaaatagaaactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcatcttctgccgcatgagcatttgatacac |
306 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| || ||||||||||||||||||||| |
|
|
| T |
26711285 |
acacgcaaatagagactttcaaaggagcactcttatgccacaaagcattcgaaacaacgtcatagttgtgcatctcctaccgcatgagcatttgatacac |
26711384 |
T |
|
| Q |
307 |
accac |
311 |
Q |
| |
|
||||| |
|
|
| T |
26711385 |
accac |
26711389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 5874886 - 5874597
Alignment:
| Q |
18 |
tccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttcattttgtccac |
117 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||| | | |||||||||||||||||||||||||||| || ||||||||||||| ||||| |
|
|
| T |
5874886 |
tccacagaaaacacaaaaatccaagttttaatttgttgccataagtcgtcaaaaataggacaatgaataattaagtgatcaattgtttcattttttccac |
5874787 |
T |
|
| Q |
118 |
aacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacg-gacgcgcaaat |
216 |
Q |
| |
|
| | | |||| || ||||| | ||||| || |||||||||||| | |||||| ||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
5874786 |
atcatgtaacgcataattgggtatcattagtaataacacctcgccgcaccaaattatcctttgttggccatctattgcggagaagacgccaagcgcaaat |
5874687 |
T |
|
| Q |
217 |
agaaactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcatcttctgccgcatgagcatttgatacac |
306 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| |||||||||||||| || |||| |||||||||| ||||||||||||||||||| |||| |
|
|
| T |
5874686 |
agaaactttcaagggaacactcttatgccaaggagcatccgaaacgacatcatggttgtgcatctcctgccgcatgagcatttgacacac |
5874597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 134; E-Value: 4e-69
Query Start/End: Original strand, 36 - 201
Target Start/End: Complemental strand, 33146728 - 33146563
Alignment:
| Q |
36 |
atccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttcattttgtccacaacctataacacaaaatt |
135 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
33146728 |
atccaagttttaatttgttgccagagattaccaaaaataggacaatgaataattaagtggtctattgtttcattttgtccacaacctgtaacacataatt |
33146629 |
T |
|
| Q |
136 |
gagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaa |
201 |
Q |
| |
|
||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33146628 |
gagaatcatgagaaataacacatcgtcgcaccaagttatcctttgttggccatctattgcggagaa |
33146563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 3490137 - 3489836
Alignment:
| Q |
16 |
gatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttcattttgtcc |
115 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||| ||| | ||||||||||||||||| |||||||| || |||| |||||||||||| || |
|
|
| T |
3490137 |
gatccacggaaaacacacaaatccaagttttaatttgttgccaaagatcaccaaaaataggacaatggataattaaatgatctaatgtttcattttggcc |
3490038 |
T |
|
| Q |
116 |
acaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacg-gacgcgcaa |
214 |
Q |
| |
|
||||||| ||||||| ||||| ||||||| ||||||||||||||| | ||||||||||| |||||||||||||| |||||| | ||||| | || ||| |
|
|
| T |
3490037 |
acaacctgtaacacacaattgtgaatcatgagaaataacacctcgccgcaccaagttattctttgttggccatcgattgcgaaagagacgccatgcacaa |
3489938 |
T |
|
| Q |
215 |
atagaaactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcatcttctgccgcatgagcatttgatacacaccaccaa |
314 |
Q |
| |
|
||||| ||||| |||||| ||||||| ||| | |||||||||||||| | || | || ||||||| || ||||||||||||||||||||||||| || |
|
|
| T |
3489937 |
atagagacttttaaaggaacactcttgtgctaaggagcatccgaaacgatatcgtggttatgcatctcttgtcgcatgagcatttgatacacaccactaa |
3489838 |
T |
|
| Q |
315 |
ta |
316 |
Q |
| |
|
|| |
|
|
| T |
3489837 |
ta |
3489836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 23651527 - 23651710
Alignment:
| Q |
15 |
ggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttcattttgtc |
114 |
Q |
| |
|
|||||||||||| ||||||| | ||| ||||| ||||||||||| |||||||||||||||||||| |||| || ||||||||||||||||| |
|
|
| T |
23651527 |
ggatccacaaaatacacaccaagacaaaacttaataagttgccagagattgccaaaaataggacaatgaattattagatgatctattgtttcattttggt |
23651626 |
T |
|
| Q |
115 |
cacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcgga |
198 |
Q |
| |
|
|||| | | |||||| ||||| ||| || ||| || ||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23651627 |
cacatcttgaaacacacaattggttgtcaatagtaatgacgccttgtcacaccaagttatcctttgtcggccatctattgcgga |
23651710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 231
Target Start/End: Complemental strand, 17713813 - 17713658
Alignment:
| Q |
77 |
acaatgaataattaagtggtctattgtttcattttgtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcc |
176 |
Q |
| |
|
||||||||| |||||||| |||| |||||| | ||| ||||||||| || || | |||| |||| ||||||||||||||| | |||||||| ||| |
|
|
| T |
17713813 |
acaatgaattattaagtgatctactgtttcttgttgaccacaacctgaaatgcatagttgattttcattagaaataacacctcgacgcaccaagtggtcc |
17713714 |
T |
|
| Q |
177 |
tttgttggccatctattgcggagaagacg-gacgcgcaaatagaaactttcaaagg |
231 |
Q |
| |
|
||||| |||||||||||||||| ||||| | ||||||||||| ||||| ||||| |
|
|
| T |
17713713 |
tttgtcggccatctattgcggatgagacgccaagcgcaaatagagacttttaaagg |
17713658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 33754325 - 33754270
Alignment:
| Q |
141 |
tcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcg |
196 |
Q |
| |
|
|||| ||||||||||||||| | |||||||||||||||||| |||||||||||||| |
|
|
| T |
33754325 |
tcatgagaaataacacctcgacgcaccaagttatcctttgtcggccatctattgcg |
33754270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 1308634 - 1308588
Alignment:
| Q |
309 |
caccaatattgggccgccaaagccaaacatctcattcagtatcctgc |
355 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
1308634 |
caccaatgttgggccgccaaagtcaaacatctgattcagtatcctgc |
1308588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 355
Target Start/End: Original strand, 26711408 - 26711451
Alignment:
| Q |
312 |
caatattgggccgccaaagccaaacatctcattcagtatcctgc |
355 |
Q |
| |
|
|||| ||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
26711408 |
caatgttgggccgccaaagccagacatctaattcagtatcctgc |
26711451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-99; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 13403935 - 13404179
Alignment:
| Q |
8 |
ctgatgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttca |
107 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13403935 |
ctgatgaggatccacaaaaaacacgccaatccaagttttaatttgttgccagagatcaccaaaaataggacaatgaataattaagtggtctattgtttca |
13404034 |
T |
|
| Q |
108 |
ttttgtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacg-g |
206 |
Q |
| |
|
||||||||||||||| ||||| | ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13404035 |
ttttgtccacaacctgtaacagataattgagaatcatgagaaataacacctcgtcgcaccaagttatcctttgttggccatctattgcggaaaagacgcc |
13404134 |
T |
|
| Q |
207 |
acgcgcaaatagaaactttcaaaggagcactcttatgccacggag |
251 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
13404135 |
acgcgcaaatagagattttcaaaggagcactcttatgccacggag |
13404179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 6e-68
Query Start/End: Original strand, 25 - 311
Target Start/End: Complemental strand, 41692030 - 41691743
Alignment:
| Q |
25 |
aaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttcattttgtccacaacctat |
124 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||| ||| | ||||||||||||||||||||||||||||| |||| ||||||||||| ||||| ||| | |
|
|
| T |
41692030 |
aaaacacaccaatccaagatttaatttgttgccaaagatcaccaaaaataggacaatgaataattaagtgatctacggtttcattttgaccacatcctgt |
41691931 |
T |
|
| Q |
125 |
aacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacg-gacgcgcaaatagaaact |
223 |
Q |
| |
|
|||||| ||||| ||||||| ||| | ||| ||||| | |||||| |||||||||||||||||||||||||| | |||||| | || |||||||||||| |
|
|
| T |
41691930 |
aacacacaattgtgaatcatgagataaaacgcctcgccgcaccaaattatcctttgttggccatctattgcgtaaaagacgccatgcacaaatagaaact |
41691831 |
T |
|
| Q |
224 |
ttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcatcttctgccgcatgagcatttgatacacaccac |
311 |
Q |
| |
|
||||||||| || |||||||||| |||||||||||||| | |||| |||||| |||| | || ||||||||||||||||||||||| |
|
|
| T |
41691830 |
ttcaaaggaacattcttatgccaaggagcatccgaaacgatatcatgattgtgtatctcttacctcatgagcatttgatacacaccac |
41691743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 24732993 - 24733094
Alignment:
| Q |
8 |
ctgatgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttca |
107 |
Q |
| |
|
||||| ||||||||| |||||||||| |||||||||||||||||||||| ||| | |||||||||||||||||||||||||| || |||| ||||||| |
|
|
| T |
24732993 |
ctgataaggatccacggaaaacacaccaatccaagttttaatttgttgccgaagatcaccaaaaataggacaatgaataattaaatgatctaatgtttca |
24733092 |
T |
|
| Q |
108 |
tt |
109 |
Q |
| |
|
|| |
|
|
| T |
24733093 |
tt |
24733094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 43599632 - 43599698
Alignment:
| Q |
8 |
ctgatgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaata |
74 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
43599632 |
ctgatgaggatccacagaaaacacaccaatccaagttttaatttgttgccagagagcacaaaaaata |
43599698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 231
Target Start/End: Complemental strand, 17858955 - 17858800
Alignment:
| Q |
77 |
acaatgaataattaagtggtctattgtttcattttgtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcc |
176 |
Q |
| |
|
||||||||| |||||||| ||||||||||| | ||| ||||| ||| || |||| |||| |||| ||||||||||||||| | ||||| ||| ||| |
|
|
| T |
17858955 |
acaatgaattattaagtgatctattgtttcttgttgaccacatcctgaaatgcaaagttgactttcattagaaataacacctcgacgcaccatgttgtcc |
17858856 |
T |
|
| Q |
177 |
tttgttggccatctattgcggagaagacg-gacgcgcaaatagaaactttcaaagg |
231 |
Q |
| |
|
||||| ||||||||||||| || ||||| | ||||||||||| ||||||||||| |
|
|
| T |
17858855 |
tttgtcggccatctattgcagatgagacgccaagcgcaaatagagactttcaaagg |
17858800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 791 - 898
Target Start/End: Complemental strand, 19477754 - 19477652
Alignment:
| Q |
791 |
atgcttcgtttggttatatgttgtgttcactaattttgtgttccaatgcaatttggacgtgatatt-agaaactatatatttaagctttagctaaaacgc |
889 |
Q |
| |
|
|||||| ||||||||| | |||| ||||||||||| ||||| ||||||||||||||||||| | || ||||||||| |||||| |||| |||||| |
|
|
| T |
19477754 |
atgctttgtttggttacacgttgagttcactaattctgtgt------gcaatttggacgtgatattgaaaagctatatattcaagcttaagctgaaacgc |
19477661 |
T |
|
| Q |
890 |
gtgttagag |
898 |
Q |
| |
|
| ||||||| |
|
|
| T |
19477660 |
gcgttagag |
19477652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 791 - 898
Target Start/End: Complemental strand, 19548679 - 19548577
Alignment:
| Q |
791 |
atgcttcgtttggttatatgttgtgttcactaattttgtgttccaatgcaatttggacgtgatatt-agaaactatatatttaagctttagctaaaacgc |
889 |
Q |
| |
|
|||||| ||||||||| | |||| ||||||||||| ||||| ||||||||||||||||||| | || ||||||||| |||||| |||| |||||| |
|
|
| T |
19548679 |
atgctttgtttggttacacgttgagttcactaattctgtgt------gcaatttggacgtgatattgaaaagctatatattcaagcttaagctgaaacgc |
19548586 |
T |
|
| Q |
890 |
gtgttagag |
898 |
Q |
| |
|
| ||||||| |
|
|
| T |
19548585 |
gcgttagag |
19548577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 791 - 898
Target Start/End: Original strand, 19584009 - 19584111
Alignment:
| Q |
791 |
atgcttcgtttggttatatgttgtgttcactaattttgtgttccaatgcaatttggacgtgatatt-agaaactatatatttaagctttagctaaaacgc |
889 |
Q |
| |
|
|||||| ||||||||| | |||| ||||||||||| ||||| ||||||||||||||||||| | || ||||||||| |||||| |||| |||||| |
|
|
| T |
19584009 |
atgctttgtttggttacacgttgagttcactaattctgtgt------gcaatttggacgtgatattgaaaagctatatattcaagcttaagctgaaacgc |
19584102 |
T |
|
| Q |
890 |
gtgttagag |
898 |
Q |
| |
|
| ||||||| |
|
|
| T |
19584103 |
gcgttagag |
19584111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 7e-83; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 7e-83
Query Start/End: Original strand, 25 - 308
Target Start/End: Original strand, 841853 - 842137
Alignment:
| Q |
25 |
aaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttcattttgtccacaacctat |
124 |
Q |
| |
|
|||||||| | |||||||| ||||||||| |||| || | ||||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||| | |
|
|
| T |
841853 |
aaaacacaacaatccaagtcttaatttgtcgccaaaggtcataaaaaatacgacaatgaataattaagtgatctattgtttcattttggccacatcctgt |
841952 |
T |
|
| Q |
125 |
aacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacg-gacgcgcaaatagaaact |
223 |
Q |
| |
|
|||||| ||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||| |
|
|
| T |
841953 |
aacacataattgagaatcattagtaataacacctcgtcgcaccaagttatcctttgttggccatctattgcggagaagatgccacgcacaaatagaaact |
842052 |
T |
|
| Q |
224 |
ttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcatcttctgccgcatgagcatttgatacacac |
308 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||| | || ||||||| ||| |||||||||||||||||||||| |
|
|
| T |
842053 |
ttcaaaggagcactcttatgccaaggagcatccgaaacgacgtcgtggttatgcatctcctgtcgcatgagcatttgatacacac |
842137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 6e-71
Query Start/End: Original strand, 12 - 311
Target Start/End: Original strand, 2681598 - 2681898
Alignment:
| Q |
12 |
tgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttcatttt |
111 |
Q |
| |
|
||||| |||||| |||||| ||| |||||| | |||||||||||||| || | ||||||||||||||| | || |||||||| |||| ||||||||||| |
|
|
| T |
2681598 |
tgagggtccacagaaaacaaaccaatccaaatcttaatttgttgccataggtcaccaaaaataggacaaggtatgattaagtgatctactgtttcatttt |
2681697 |
T |
|
| Q |
112 |
gtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacg-gacgc |
210 |
Q |
| |
|
||||||| ||| |||| || |||| |||| || |||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
2681698 |
gtccacatcctgtaacgcataattatgaattattagaaataacaccccgtcgcaccaagttatcctttgttggccatctattacggagaagacgccacaa |
2681797 |
T |
|
| Q |
211 |
gcaaatagaaactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcatcttctgccgcatgagcatttgatacacacca |
310 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||| |||||||| ||||||||||||| || ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2681798 |
acaaatagaaatcttcaaatgagcactcttatgccaaggagcatctgaaacaacgtcatggttatgcatctcctgccgcatgagcatttgatacacacca |
2681897 |
T |
|
| Q |
311 |
c |
311 |
Q |
| |
|
| |
|
|
| T |
2681898 |
c |
2681898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 15 - 311
Target Start/End: Complemental strand, 16421961 - 16421664
Alignment:
| Q |
15 |
ggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttcattttgtc |
114 |
Q |
| |
|
|||||||||||| ||||||| | ||| |||||| ||||||||||| |||||||| |||| ||||||| |||| || | ||||||||| |||| | |
|
|
| T |
16421961 |
ggatccacaaaatacacaccaaagtaagatttaataagttgccagagatttccaaaaagaggataatgaattattagatgataaattgtttcaatttggc |
16421862 |
T |
|
| Q |
115 |
cacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacgg-acgcgca |
213 |
Q |
| |
|
|||| ||| |||||| ||||| ||| || |||||| ||||||| |||||||||||||||||||| ||| |||||||||| |||| | ||||||| |
|
|
| T |
16421861 |
cacatcctgaaacacacaattggttgtcaatagtaataacgcctcgtcgcaccaagttatcctttgttgaccaactattgcggaaaagatgccacgcgca |
16421762 |
T |
|
| Q |
214 |
aatagaaactttcaaaggagcactcttatgccacggagcatccgaaacaacgtcataattgtgcatcttctgccgcatgagcatttgatacacaccac |
311 |
Q |
| |
|
|||| |||||||||| | |||| ||| |||| || || |||||||||||||| |||||||| |||| |||| ||||||||||||||||||||||| |
|
|
| T |
16421761 |
aataagaactttcaaaaaaacacttttaagccaaggtgcctccgaaacaacgtcgtaattgtgtatctcctgcttcatgagcatttgatacacaccac |
16421664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 9263992 - 9263911
Alignment:
| Q |
87 |
attaagtggtctattgtttcattttgtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcacacca |
168 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9263992 |
attaagtagtctattgttttattttgtccacaacccataacacataattgagaatcatgagaaataacacctcgtcacacca |
9263911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 74 - 204
Target Start/End: Complemental strand, 13640873 - 13640743
Alignment:
| Q |
74 |
aggacaatgaataattaagtggtctattgtttcattttgtccacaacctataacacaaaattgagaatcataagaaataacacctcgtcacaccaagtta |
173 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||| ||| |||||| |||||| ||| || | | || || |||| |||||||||| |
|
|
| T |
13640873 |
aggacaatgaataattagatggtctattgtttcattttgaccacatcctgaaacacacaattgattgtcaacagtactgacgccccgtcgcaccaagtta |
13640774 |
T |
|
| Q |
174 |
tcctttgttggccatctattgcggagaagac |
204 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| |
|
|
| T |
13640773 |
tcctttgtcggccatctattgcggaaaagac |
13640743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 38437060 - 38437137
Alignment:
| Q |
156 |
cctcgtcacaccaagttatcctttgttggccatctattgcggagaagacg-gacgcgcaaatagaaactttcaaagga |
232 |
Q |
| |
|
||||||| ||||||||| || ||||| |||||||||||||||| ||||| || | ||||||||||||||||||||| |
|
|
| T |
38437060 |
cctcgtcgcaccaagttgtcttttgtcggccatctattgcggaagagacgccacacacaaatagaaactttcaaagga |
38437137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 27017243 - 27017142
Alignment:
| Q |
53 |
ttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttcattttgtccacaacctataacacaaaattgagaatcataagaaata |
152 |
Q |
| |
|
|||||| |||| |||||| ||||||||||||||||||| || | ||||||||||||| ||||| || |||||||| |||||| ||| | |||||| |
|
|
| T |
27017243 |
ttgccaaagagagccaaaagtaggacaatgaataattaaatgtgttgttgtttcattttgcccacagcccgaaacacaaagttgagagtcaaaggaaata |
27017144 |
T |
|
| Q |
153 |
ac |
154 |
Q |
| |
|
|| |
|
|
| T |
27017143 |
ac |
27017142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0217 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0217
Description:
Target: scaffold0217; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 205
Target Start/End: Complemental strand, 8040 - 7888
Alignment:
| Q |
53 |
ttgccagagagctccaaaaataggacaatgaataattaagtggtctattgtttcattttgtccacaacctataacacaaaattgagaatcataagaaata |
152 |
Q |
| |
|
|||||| |||| |||||| ||||| ||||||||||||| || | ||||||||||||| ||||||||| |||||||| |||||| ||| |||||| |
|
|
| T |
8040 |
ttgccaaagagaaccaaaagtaggataatgaataattaaatgtgttgttgtttcattttgcccacaacctgaaacacaaagttgagattcaagggaaata |
7941 |
T |
|
| Q |
153 |
acacctcgtcacaccaagttatcctttgttggccatctattgcggagaagacg |
205 |
Q |
| |
|
|| || || | | ||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
7940 |
actccacgacgccataagttatcctttgcaggccacctattgcggagtagacg |
7888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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