View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4596-Insertion-11 (Length: 137)

Name: NF4596-Insertion-11
Description: NF4596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4596-Insertion-11
NF4596-Insertion-11
[»] chr3 (12 HSPs)
chr3 (56-137)||(19849354-19849435)
chr3 (58-131)||(20015886-20015959)
chr3 (58-131)||(19858429-19858502)
chr3 (58-126)||(20046480-20046548)
chr3 (58-109)||(17115073-17115124)
chr3 (62-127)||(24839666-24839731)
chr3 (58-130)||(19818920-19818992)
chr3 (53-137)||(19956439-19956523)
chr3 (62-137)||(19944078-19944153)
chr3 (58-137)||(20036282-20036361)
chr3 (64-124)||(19832235-19832295)
chr3 (58-109)||(26647361-26647412)
[»] chr5 (2 HSPs)
chr5 (58-137)||(9815394-9815473)
chr5 (58-109)||(26354634-26354685)
[»] chr8 (1 HSPs)
chr8 (12-50)||(22685874-22685912)
[»] chr7 (6 HSPs)
chr7 (60-109)||(12497567-12497616)
chr7 (60-109)||(12521432-12521481)
chr7 (58-126)||(12579781-12579849)
chr7 (59-126)||(12519486-12519553)
chr7 (58-108)||(12495703-12495753)
chr7 (62-109)||(12581684-12581731)
[»] chr4 (1 HSPs)
chr4 (58-115)||(6397440-6397497)


Alignment Details
Target: chr3 (Bit Score: 66; Significance: 1e-29; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 19849354 - 19849435
Alignment:
Q  56 atcctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcagctatgaatga 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||| ||||    
T  19849354 atcctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggcattagactcggctatggatga 19849435  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 20015959 - 20015886
Alignment:
Q  58 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcagctat 131  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||| | |||  ||||||||||||||    
T  20015959 cctttattgtttaggtggcataaggttcaggctttgaaaattgacaatgttatggtggcattagactcagctat 20015886  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 19858429 - 19858502
Alignment:
Q  58 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcagctat 131  Q
    |||||||||||||| |||||||||||| ||||||||||| |||||||||||| |||||  |||||||| |||||    
T  19858429 cctttattgtttaggtggcataaggttaaggccttgaaagttgacaatgttaagttggcattagactcggctat 19858502  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 20046480 - 20046548
Alignment:
Q  58 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactca 126  Q
    |||||||||||||| |||||||||||||| || ||||||||||| ||||||| |||||  |||||||||    
T  20046480 cctttattgtttaggtggcataaggttcacgcattgaaaattgataatgttaagttggcattagactca 20046548  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 17115073 - 17115124
Alignment:
Q  58 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgtta 109  Q
    |||||||||||||| ||||||| |||||||||| ||||||||||||||||||    
T  17115073 cctttattgtttaggtggcatagggttcaggccgtgaaaattgacaatgtta 17115124  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 24839731 - 24839666
Alignment:
Q  62 tattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcag 127  Q
    ||||||| || |||||||| ||| |||||||||||||||||||||| |||||||  ||||||||||    
T  24839731 tattgttgaggtggcataatgttaaggccttgaaaattgacaatgtgaggttggcattagactcag 24839666  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 19818920 - 19818992
Alignment:
Q  58 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcagcta 130  Q
    ||||| |||||||| |||||| | |||||||||||| ||||||||||||||||| |||  |||||||| ||||    
T  19818920 ccttttttgtttaggtggcatgatgttcaggccttggaaattgacaatgttaggatggcattagactcggcta 19818992  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 19956439 - 19956523
Alignment:
Q  53 ggaatcctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcagctatgaatga 137  Q
    |||| ||||| |||||||| |||||||||||| || |||||| | |||||||||||||| |||  |||||||| |||||| ||||    
T  19956439 ggaacccttttttgtttaggtggcataaggttaagcccttgatagttgacaatgttaggatggcattagactcggctatggatga 19956523  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 19944078 - 19944153
Alignment:
Q  62 tattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcagctatgaatga 137  Q
    ||||||| || |||||||| ||| ||||||||||||||||||||||  ||||||  ||||| |||||||| |||||    
T  19944078 tattgttgaggtggcataatgttaaggccttgaaaattgacaatgtggggttggcattagattcagctatcaatga 19944153  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 20036361 - 20036282
Alignment:
Q  58 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcagctatgaatga 137  Q
    ||||| |||||||| |||||||||||| || ||||||  ||||||||||||||| |||  |||||||| |||||| ||||    
T  20036361 ccttttttgtttaggtggcataaggttaagcccttgatgattgacaatgttaggatggcattagactcggctatggatga 20036282  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 19832235 - 19832295
Alignment:
Q  64 ttgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagact 124  Q
    |||||||| |||||||||||| ||||||||  |||||||||||||||| |||  |||||||    
T  19832235 ttgtttaggtggcataaggttaaggccttggtaattgacaatgttaggatggcattagact 19832295  T

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Target: chr3; HSP #12
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 26647361 - 26647412
Alignment:
Q  58 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgtta 109  Q
    ||||| |||||||| |||||||||||| ||  |||||||||||||| |||||    
T  26647361 cctttgttgtttaggtggcataaggttaagatcttgaaaattgacagtgtta 26647412  T

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Target: chr5 (Bit Score: 48; Significance: 8e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 9815394 - 9815473
Alignment:
Q  58 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcagctatgaatga 137  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||| | |||  |||||||| |||||| ||||    
T  9815394 cctttattgtttaggtgacataaggttcaggccttgaaaattgacaatgttaagctggcattagactcggctatggatga 9815473  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 26354685 - 26354634
Alignment:
Q  58 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgtta 109  Q
    |||||||||||||||||||||| ||| || ||||||||||||||||||||||    
T  26354685 cctttattgtttagatggcatagggtacaagccttgaaaattgacaatgtta 26354634  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 22685912 - 22685874
Alignment:
Q  12 tcatggttttaggtggtgatcctgttttcacttcacttc 50  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22685912 tcatggttttaggtggtgatcctgttttcacttcacttc 22685874  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 12497567 - 12497616
Alignment:
Q  60 tttattgtttagatggcataaggttcaggccttgaaaattgacaatgtta 109  Q
    ||||||||| || ||||||||||||| |||||||||||||| ||||||||    
T  12497567 tttattgttgaggtggcataaggttctggccttgaaaattggcaatgtta 12497616  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 12521432 - 12521481
Alignment:
Q  60 tttattgtttagatggcataaggttcaggccttgaaaattgacaatgtta 109  Q
    ||||||||| || ||||||||||||| |||||||||||||| ||||||||    
T  12521432 tttattgttgaggtggcataaggttctggccttgaaaattggcaatgtta 12521481  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 12579849 - 12579781
Alignment:
Q  58 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactca 126  Q
    ||||||||| |||| | | ||||||||||||||||| ||||||||||||||| ||| |  |||||||||    
T  12579849 cctttattgcttaggttgaataaggttcaggccttgcaaattgacaatgttaagtttgcattagactca 12579781  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 12519553 - 12519486
Alignment:
Q  59 ctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactca 126  Q
    |||||||| |||| | | ||||||||||||||||| ||||||||||||||| ||| |  |||||||||    
T  12519553 ctttattgcttaggttgaataaggttcaggccttgcaaattgacaatgttaagtttgcattagactca 12519486  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 12495753 - 12495703
Alignment:
Q  58 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgtt 108  Q
    ||||||||| |||| | | ||||||||||||||||| ||||||||||||||    
T  12495753 cctttattgcttaggttgaataaggttcaggccttgcaaattgacaatgtt 12495703  T

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Target: chr7; HSP #6
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 12581684 - 12581731
Alignment:
Q  62 tattgtttagatggcataaggttcaggccttgaaaattgacaatgtta 109  Q
    ||||||| || ||||||||||||| |||||||||||||  ||||||||    
T  12581684 tattgttgaggtggcataaggttctggccttgaaaattagcaatgtta 12581731  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 6397497 - 6397440
Alignment:
Q  58 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttgg 115  Q
    |||||||| ||||| ||| |||||||||||||||| |||||||||||| ||| |||||    
T  6397497 cctttattttttaggtggtataaggttcaggcctttaaaattgacaatattaagttgg 6397440  T

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