View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4596-Insertion-2 (Length: 1037)
Name: NF4596-Insertion-2
Description: NF4596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4596-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 809; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 809; E-Value: 0
Query Start/End: Original strand, 73 - 1032
Target Start/End: Original strand, 38362463 - 38363419
Alignment:
| Q |
73 |
aaatgatgatttgggtctaatgtaatatttccttgaccttgatgtagttgaacaaaatgatggaatcattatttcttagaaaaagtacgcaagtgatagt |
172 |
Q |
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| T |
38362463 |
aaatgatgatttgggtctaatgtaatatttccttgaccttgatgtagttcaacaaaatgatggaatcatcatttcttagaaaaagtacgcaagtaatatt |
38362562 |
T |
|
| Q |
173 |
ttgaagaagttcaggatagagcatgcaaagctgattttcaagtcatttgaaatatttggatggaatatgaatgaatagtttgtgctcatatagtattgtg |
272 |
Q |
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| T |
38362563 |
ttgaagaagttcaggatagagcatgcaaagctgattttcaagtcatttgaaatatttggatggaatatgaatgaatagtttgtgctcatatagt---gtg |
38362659 |
T |
|
| Q |
273 |
tttgtgtgatatggtcagtagtccaattttggtaacagtcagactcatttgcatttattggtgcctcacataccaattgattgatatagagtaccctaca |
372 |
Q |
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| T |
38362660 |
tctgtgtgatatggtcagtagtccaattttggtaacagtcagactcatttgcatttattggtgcctcacataccaattgattgatttagagtaccttaca |
38362759 |
T |
|
| Q |
373 |
cgtaggtagggaactcaagaggaaaacaacattaaattccccacagtatagaatacaattgtcttcatcagcattacgtttataatatgattaccttatt |
472 |
Q |
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| T |
38362760 |
cgtag----ggaactcaagaggaaaacaacattaaattccccacagtatagaatacaattgtcttcatcagcattacgtttataatatgattaccttatt |
38362855 |
T |
|
| Q |
473 |
aaattttgtcaacggctcaattatatggttccttaattaaactttgcaggcaatagtactgtagctaagctagggaatcacatgatattatccccttttc |
572 |
Q |
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| T |
38362856 |
aaattttgtcaacggctcaattatatggttccttaattaaactttgcaggcaatagtactgtagctaagctaggtaatcacatgatattatccccttttc |
38362955 |
T |
|
| Q |
573 |
ttcctcattgtcatatttattaggaaaacgtgaaatatgagaataataattgtaaaaattgcaggaaaatcattagaatgtgttatttaaatgcaaacat |
672 |
Q |
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| T |
38362956 |
ttcctcattgtcatatttattaggaacacgtgaaatatgagaataataattgtaaaaattgcaagaaaatcattataatgtgttatttaaatgcaaacat |
38363055 |
T |
|
| Q |
673 |
taactacattttaggctccataattaataatacagtctttcatttaagccaatggatccttactcctttgtactccgaaattatgtcacgcgtaattaaa |
772 |
Q |
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| T |
38363056 |
taactacattttaggctctataattaataattcagtctttcatttaaactaatggatccttactcctttgtaccccaaaattatatcacgcataattaaa |
38363155 |
T |
|
| Q |
773 |
ttatctctaaacgatcttgttaatttgaaatctgacgatcaagattgatagttgtattgcgcacttattgtgtgagccctaaatccctaccaacatattg |
872 |
Q |
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| T |
38363156 |
ttatctctaaacgatcttattaatttgaaatctgacgatcaagattgatagttgtattgcgcacttattgtgtgagtcctaaatccctaccaacatattg |
38363255 |
T |
|
| Q |
873 |
aagacttggatttgtaaccttatggcacttaaataactttattttatcttggt-aaaggtgcttat-atattatttaccaactccctttgggagt-agct |
969 |
Q |
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| T |
38363256 |
aagacttggatttgtaaccttatgaaacttaaataactttattttatcttggtaaaaggtgcttataatattatttaccaactccctttgggagtaagct |
38363355 |
T |
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| Q |
970 |
taattagttcaaggagagaaattta-gcgagaggtataagtggattttggagaccaatgacttg |
1032 |
Q |
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| T |
38363356 |
taattagttcaaggagagaaatttaggcgagaggtataagtggattttggagaccaatgacttg |
38363419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 38360887 - 38360954
Alignment:
| Q |
8 |
tatacttacctcacaatcaaactctggattattagggatccgttccgtgacaatcagagacaccaaaa |
75 |
Q |
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| T |
38360887 |
tatacttacctcacaatcaaactctagattattaggggcccgttccatgacaatcagagacaccaaaa |
38360954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 951 - 1032
Target Start/End: Original strand, 38369695 - 38369778
Alignment:
| Q |
951 |
actccctttgggagt-agcttaattagttcaaggagagaaattta-gcgagaggtataagtggattttggagaccaatgacttg |
1032 |
Q |
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| T |
38369695 |
actccctttgggagtgagcttaattagtttaaggagtgaaatttaagcgtgatgtataagtggattttggagaccaattacttg |
38369778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 42303396 - 42303468
Alignment:
| Q |
131 |
gatggaatcattatttcttagaaaaagtacgcaagtgatagtttgaagaagttcaggatagagcatgcaaagc |
203 |
Q |
| |
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| T |
42303396 |
gatggaatctttatttctcaaaagaagtatgcaagtgatattttgaagaagttcaagatggagcattcaaagc |
42303468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 514 - 558
Target Start/End: Original strand, 38369202 - 38369247
Alignment:
| Q |
514 |
ctttgcaggcaatagta-ctgtagctaagctagggaatcacatgat |
558 |
Q |
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| T |
38369202 |
ctttgcagccaatactatctgtagctaagctagggaatcacatgat |
38369247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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