View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4596-Insertion-4 (Length: 905)
Name: NF4596-Insertion-4
Description: NF4596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4596-Insertion-4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 833; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 833; E-Value: 0
Query Start/End: Original strand, 5 - 905
Target Start/End: Complemental strand, 40539688 - 40538788
Alignment:
| Q |
5 |
acactccactcctttccatgaacatggagtggaatgagaggaattccatgtggaacttatgttagcaggcacaacagtccagtggctcaaaagtgacaac |
104 |
Q |
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| T |
40539688 |
acactccactcctttccatgaacatggagtggaatgagaggaattccatgtggaacttatgttagcaggcacaacagtccagtggctcaaaagtgacaac |
40539589 |
T |
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| Q |
105 |
agagccaaaccctcaaagttcaatgcagaagtaacatataacaatatagaaaagcaaagaagaaacacatatagataccccataaaaataaaaacaatga |
204 |
Q |
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| T |
40539588 |
agagccaaaccctcaaagttcaatgcagaagtaacatataacaatatagaaaagcaaagaagaaacacatatagataccccataaaaataaaaacaatga |
40539489 |
T |
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| Q |
205 |
ggcacaaagagaaacagactatgaatgttgaccggaacaattcttaaccagactttaacgaactatatagatactactagagcctctttatatagaatcg |
304 |
Q |
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| T |
40539488 |
ggcacaaagagaaacagactatgaatgttgaccggaacaattcttaaccagactttaacgaactatatagatactactagagcctctttatatagaatcg |
40539389 |
T |
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| Q |
305 |
gagagttgagacaaaagaaagtatgaatgatatggtggcaaagttttaagaggggagaaacacttaccttaatgcaaggtgctgttttgggcttttgaat |
404 |
Q |
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| T |
40539388 |
gagagttgagacaaaagaaagtatgaatgatatggtggcaaagttttaagaggggagaaacacttaccttaatgcaaggtgctgttttgggcttttgaat |
40539289 |
T |
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| Q |
405 |
ctgttatggagttgtgagtgcaaatgaagtataataaaaatagttaggagcttaaaatgatgaaattttgtccttcttcnnnnnnnnnnnnnnnnnnnng |
504 |
Q |
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| T |
40539288 |
ctgttatggagttgtgagtgcaaatgaagtataataaaaatagttaggagcttaaaatgatgaaattttgtccttcttcatatattatatttatatatag |
40539189 |
T |
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| Q |
505 |
tggcgtgcatgattttggaaccatgcaattatgagcaatgagatgaccagatttagaagttgattgttgaatagattcaattgtcaaagggaatattgta |
604 |
Q |
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| T |
40539188 |
tggcgtgcatgattttggaaccatgcaattatgagcaatgagatgaccagatttagaagttgattgttgaatagattcaattgtcaaagggaatattgta |
40539089 |
T |
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| Q |
605 |
atggtcagttgggtgcccacttggtacaaacaagactgactacaagagcaatgttatgcaatcaaccactgttttaacaaataataaataaatgatttct |
704 |
Q |
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| T |
40539088 |
atggtcagttgggtgcccacttggtacaaacaagactgactccaagagcaatgttatgcaatcaaccactgttttaacaaataataaataaatgatttct |
40538989 |
T |
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| Q |
705 |
taaaatgtaactttggttctctattttatctcattttcgattttggtctatctatttataaattcagtattttagcaccttatttctaaaatcattgatt |
804 |
Q |
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| T |
40538988 |
taaaatgtaactttggttctctattttatctcattttcgattttggtctatctatttataaattcagtattttagcaccttatttctaaaatcattgatt |
40538889 |
T |
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| Q |
805 |
tttccatctatatatttcaagataggattttgacagcgtgacaagggatcccacttgtgtgacattgtggtggaaatgtcacatgacattgccgtactac |
904 |
Q |
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| T |
40538888 |
tttccatctatatatttcaagataggattttgacagcgtgacaagggatcccatttgtgtgacattgtggtggaaatgtcacatgacattgccgtactac |
40538789 |
T |
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| Q |
905 |
a |
905 |
Q |
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| T |
40538788 |
a |
40538788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 856 - 895
Target Start/End: Original strand, 15569585 - 15569624
Alignment:
| Q |
856 |
cacttgtgtgacattgtggtggaaatgtcacatgacattg |
895 |
Q |
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| T |
15569585 |
cacttgtgtgacattgtggtgggaatgtcacatgacattg |
15569624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 856 - 897
Target Start/End: Original strand, 9638385 - 9638426
Alignment:
| Q |
856 |
cacttgtgtgacattgtggtggaaatgtcacatgacattgcc |
897 |
Q |
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| T |
9638385 |
cacttgtgtgacattgtggtgggaatgtcacatgacattgcc |
9638426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 855 - 897
Target Start/End: Original strand, 20800991 - 20801033
Alignment:
| Q |
855 |
ccacttgtgtgacattgtggtggaaatgtcacatgacattgcc |
897 |
Q |
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| T |
20800991 |
ccacttgtgtgacattgtggtgggaatgtcagatgacattgcc |
20801033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 850 - 897
Target Start/End: Original strand, 14004707 - 14004754
Alignment:
| Q |
850 |
ggatcccacttgtgtgacattgtggtggaaatgtcacatgacattgcc |
897 |
Q |
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|||| ||||||||||||||||||||| ||||||| ||||| ||||||| |
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| T |
14004707 |
ggattccacttgtgtgacattgtggtagaaatgttacatgtcattgcc |
14004754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 863 - 897
Target Start/End: Complemental strand, 20801173 - 20801139
Alignment:
| Q |
863 |
gtgacattgtggtggaaatgtcacatgacattgcc |
897 |
Q |
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| T |
20801173 |
gtgacattgtggtgggaatgtcacatgacattgcc |
20801139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 850 - 897
Target Start/End: Complemental strand, 34915283 - 34915235
Alignment:
| Q |
850 |
ggatcccacttgtgtgacattgtggt-ggaaatgtcacatgacattgcc |
897 |
Q |
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| T |
34915283 |
ggattccacttgtgtgacattgtggtggggaatgtcacatgacattgcc |
34915235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 864 - 897
Target Start/End: Original strand, 17263674 - 17263707
Alignment:
| Q |
864 |
tgacattgtggtggaaatgtcacatgacattgcc |
897 |
Q |
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| T |
17263674 |
tgacattgtggtgggaatgtcacatgacattgcc |
17263707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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