View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4596-Insertion-6 (Length: 621)
Name: NF4596-Insertion-6
Description: NF4596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4596-Insertion-6 |
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| [»] chr2 (10 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 558; Significance: 0; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 8 - 621
Target Start/End: Complemental strand, 5585889 - 5585278
Alignment:
| Q |
8 |
attcctgatgaaaggccttgctataataggggagagtatgtgttttgggatgaattccataccactgaggcttggaacctagtcactgcaacaagaatgt |
107 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5585889 |
attcctgatgaaaggccatgctataataggggagagtatgtgttttgggatgaattccataccactgaggcttggaacctagtcactgcaacaagaatgt |
5585790 |
T |
|
| Q |
108 |
atgattcatataataatttagtcttcacttatccaatggatattaagaaccttgctgaacaagaaactgtgaaggatttggagcctataaatgtaatcac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5585789 |
atgattcatataataatttagtcttcacttatccaatggatattaagaaccttgctgaacaagaaactatgaaggatttggagcctataaatgtaatcac |
5585690 |
T |
|
| Q |
208 |
atcaaagcttagtgcctctagttaaataggttcaagttattatgcattcattcacattgagctaaatagcttttacataattaggccctactcatatgct |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5585689 |
atcaaagcttagtgcctctagttaaataggttcaagttattatgcattcattcacattgagctaaatagcttttacataattaggccctactcatatgct |
5585590 |
T |
|
| Q |
308 |
gttagaatattgtatggattgtttcttttcctacctacatttgaaacaatattttcttatcaaatagcattattgttgactgaaataatgaaataagttt |
407 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5585589 |
gttacaatattgtatggattgtttcttttcctacctacatttgaaacaatcttttcttatcaaatagcattattgttaactgaaataatgaaataagttt |
5585490 |
T |
|
| Q |
408 |
aatcttataccatcttaagtttgatctgattatacgttagtcgataactatatataagcgtgtatctgaaatcttgataaggagaaaagtaattatttga |
507 |
Q |
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| T |
5585489 |
aatcttatactatcttaagttt-atctgattatacgttagtcgataactatatataagcgtgtatctgaaatcttgataaggagaaaagtaattatttga |
5585391 |
T |
|
| Q |
508 |
tttggaactgaaaatatgttggccgtacatttacccaatgtctcaattctttccaatattttcgattttcttaagttgttgtcaaagaggatcaagaaca |
607 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
5585390 |
tttggaactgaaaatatgttggccgcacatttacccagtgtctcaattctttccaatgttttcgattttctt-agttgttgtcaaagacgatcaagaaca |
5585292 |
T |
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| Q |
608 |
acctattgatagat |
621 |
Q |
| |
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|||||||||||||| |
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| T |
5585291 |
acctattgatagat |
5585278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 8 - 476
Target Start/End: Complemental strand, 5592115 - 5591652
Alignment:
| Q |
8 |
attcctgatgaaaggccttgctataataggggagagtatgtgttttgggatgaattccataccactgaggcttggaacctagtcactgcaacaagaatgt |
107 |
Q |
| |
|
|||| |||||||||||| |||| ||||||| | ||||||||||||||||||| | ||||| || ||||||||||||||| ||| |||||||| | | |
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| T |
5592115 |
attcgtgatgaaaggccatgctctaataggagggagtatgtgttttgggatgcagtccatcccggcgaggcttggaacctactcattgcaacaacatctt |
5592016 |
T |
|
| Q |
108 |
atgattcatataataatttagtcttcacttatccaatggatattaagaaccttgctgaacaagaaactgtgaaggatttggagcctataaatgtaatcac |
207 |
Q |
| |
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| ||||||| |||| ||| || || |||||||||||||||||||| |||||| ||||||||||| || || ||| ||||| |||| |
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| T |
5592015 |
acgattcatctaatcattcagggtttgcttatccaatggatattaagcaccttgttgaacaagaaattgagatggaattggatt------------tcac |
5591928 |
T |
|
| Q |
208 |
atcaaagcttagtgcctctagttaaataggttcaagttattatgcattcattcacattgagctaaatagcttttacataattaggccctactcatatgct |
307 |
Q |
| |
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||| |||||||| |||| ||||||||| ||||||||||||| ||||||||| ||||| ||||||||||| |||| | ||||||||||||||||| |
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| T |
5591927 |
ttcacagcttagttcctcgagttaaatatgttcaagttatta-----gcattcacatggagcttaatagcttttatataaatcggccctactcatatgct |
5591833 |
T |
|
| Q |
308 |
gttagaatattgtatggattgtttc-ttttcctacctacatttgaaacaatattttcttatcaaatagcattattgttgactgaaat-aatgaaataagt |
405 |
Q |
| |
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|||| |||| | ||||||||||||| |||||||||| ||||||||| |||| ||||| ||||||| |||| |||||| |||| ||| |||| || |||| |
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| T |
5591832 |
gttacaataatatatggattgtttctttttcctaccgacatttgaagcaatcttttcatatcaaacagcaatattgtaaactggaataaatgtaacaagt |
5591733 |
T |
|
| Q |
406 |
ttaat--cttataccatcttaagtttgatctgatt--------atacgttagtcgataactatatataagcgtgtatctga |
476 |
Q |
| |
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||||| |||||||| |||||| ||||| ||||| ||| ||| |||||||||||||||||| |||||||||| |
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| T |
5591732 |
ttaattggttataccaccttaagcttgatttgatttgtgttaaataaattattcgataactatatataagtgtgtatctga |
5591652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 5572442 - 5572277
Alignment:
| Q |
8 |
attcctgatgaaaggccttgctataataggggagagtatgtgttttgggatgaattccataccactgaggcttggaacctagtcactgcaacaagaatgt |
107 |
Q |
| |
|
||||||||||||||||| |||||||||||| | || |||||||||||||||||| ||||| |||| ||||||||| ||||| || |||||||||||||| |
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| T |
5572442 |
attcctgatgaaaggccatgctataataggagtgactatgtgttttgggatgaagtccatcccaccgaggcttggtacctactctttgcaacaagaatgt |
5572343 |
T |
|
| Q |
108 |
atgattcatataataatttagtcttcacttatccaatggatattaagaaccttgctgaacaagaaa |
173 |
Q |
| |
|
||||||||| ||||||| || |||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
5572342 |
atgattcatctaataatccagggttcacttatccaatggatattaagcaccttgttgaacaagaaa |
5572277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 5581857 - 5581624
Alignment:
| Q |
15 |
atgaaaggccttgctataataggggagagtatgtgttttgggatgaattccataccactgaggcttggaacctagtcactgcaacaaga----atgtatg |
110 |
Q |
| |
|
|||||||||| |||||||||||| | || ||| | |||||||||||| ||||| |||||||||| | |||| | ||||||||||||| || |||| |
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| T |
5581857 |
atgaaaggccatgctataataggagtgattattttttttgggatgaagtccatcccactgaggcatataaccaactcactgcaacaaggtcttat-tatg |
5581759 |
T |
|
| Q |
111 |
attcatataataatttagtcttcacttatccaatggatattaagaaccttgctgaacaagaaactgtgaaggatttggagcctataaatgtaatcacatc |
210 |
Q |
| |
|
||||||||||| | || ||||| ||||||||||||||||| ||||||| ||||||| ||||| || ||| |||||| | ||||||| | |||||| |
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| T |
5581758 |
attcatataat---tcaggattcacatatccaatggatattaaaaaccttgttgaacaaaaaactaagatggaattggagtccataaatgagagcacatc |
5581662 |
T |
|
| Q |
211 |
aaagcttagtgcctctagttaaataggttcaagttatt |
248 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |
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|
| T |
5581661 |
aaagcttagtgcctcaagttaaataggttcaagttatt |
5581624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 5580123 - 5579958
Alignment:
| Q |
8 |
attcctgatgaaaggccttgctataataggggagagtatgtgttttgggatgaattccataccactgaggcttggaacctagtcactgcaacaagaatgt |
107 |
Q |
| |
|
|||| |||||||||||| |||||||||||| | || ||||||| |||||||| | | ||| ||||||||||||||| |||| ||| |||||||||||||| |
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| T |
5580123 |
attcgtgatgaaaggccatgctataataggagtgaatatgtgtcttgggatgcagttcatcccactgaggcttggagcctactcattgcaacaagaatgt |
5580024 |
T |
|
| Q |
108 |
atgattcatataataatttagtcttcacttatccaatggatattaagaaccttgctgaacaagaaa |
173 |
Q |
| |
|
| ||||||| || ||||| || ||||||||||||||||||||||| |||||| || |||||||| |
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| T |
5580023 |
acgattcatctactaattcagggttcacttatccaatggatattaaacaccttgttgcacaagaaa |
5579958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 5575387 - 5575225
Alignment:
| Q |
8 |
attcctgatgaaaggccttgctataataggggagagtatgtgttttgggatgaattccataccactgaggcttggaacctagtcactgcaacaagaatgt |
107 |
Q |
| |
|
||||||||||||||||| |||||||||||| | ||||||| ||||||||||||| ||||| |||||||||| | |||| | || ||||| ||| | |
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| T |
5575387 |
attcctgatgaaaggccatgctataataggagtgagtatgcgttttgggatgaagtccatcccactgaggcaagcaaccaactctatgcaataaggtctt |
5575288 |
T |
|
| Q |
108 |
atgattcatataataatttagtcttcacttatccaatggatattaagaaccttgctgaacaagaaa |
173 |
Q |
| |
|
|| ||||| |||||| || ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5575287 |
ataattca---cataattcagggttcacttatccaatggatattaagaaccttgttgaacaagaaa |
5575225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 381
Target Start/End: Complemental strand, 5581611 - 5581560
Alignment:
| Q |
330 |
ttcttttcctacctacatttgaaacaatattttcttatcaaatagcattatt |
381 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| ||||||||||||||||| |
|
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| T |
5581611 |
ttcttttcctacctacatttgaagcaatcttttcatatcaaatagcattatt |
5581560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 5575206 - 5575162
Alignment:
| Q |
204 |
tcacatcaaagcttagtgcctctagttaaataggttcaagttatt |
248 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
5575206 |
tcacttcacagcttagtgcctctagttaaataggttcaagttatt |
5575162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 383
Target Start/End: Complemental strand, 5579882 - 5579829
Alignment:
| Q |
330 |
ttcttttcctacctacatttgaaacaatattttcttatcaaatagcattattgt |
383 |
Q |
| |
|
||||| |||||||||||||||| || |||||||| |||||||| ||||||||| |
|
|
| T |
5579882 |
ttcttgtcctacctacatttgataccatattttcatatcaaatgacattattgt |
5579829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 5579939 - 5579895
Alignment:
| Q |
204 |
tcacatcaaagcttagtgcctctagttaaataggttcaagttatt |
248 |
Q |
| |
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|||| ||| ||||||||||||||||||||| | |||||||||||| |
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| T |
5579939 |
tcacttcacagcttagtgcctctagttaaacatgttcaagttatt |
5579895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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