View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4596-Insertion-8 (Length: 466)

Name: NF4596-Insertion-8
Description: NF4596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4596-Insertion-8
NF4596-Insertion-8
[»] chr1 (3 HSPs)
chr1 (7-466)||(31179846-31180311)
chr1 (7-255)||(31002416-31002664)
chr1 (284-447)||(31002654-31002816)


Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 7 - 466
Target Start/End: Original strand, 31179846 - 31180311
Alignment:
Q  7 aacctgaataatagttgatgacctagtttgccttatatgtctgaatttatcacgagcacgtcgagcagccatagcctgaaaaactgactgtaagacaacg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31179846 aacctgaataatagttgatgacctagtttgccttatatgtctgaatttatcacgagcacgtcgagcagccatagcctgaaaaactgactgtaagacaacg 31179945  T
Q  107 acagaaatctttatttcacagtagcattttctggctaatcttccacgtgtataggcttgaattttgatggtagctgctttcctcttcatgtgataatatt 206  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31179946 acagaaatctttatttcagagtagcattttctggctaatcttccacgtgtataggcttgaattttgatggtagctgctttcctcttcatgtgataatatt 31180045  T
Q  207 gtctccgtgccagttctcctaaatatcacaaaaataaagtatttcagga-----nnnnnnnnnnnnnngaagaagctaaaatgtatttcaggaatatatt 301  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||                   |||||||||||||||||||||||||||||| |    
T  31180046 gtctccgtgccaattctcctaaatatcacaaaaataaagtatttcaggatttttttttttttgtttttgaagaagctaaaatgtatttcaggaatataat 31180145  T
Q  302 gattggatgaatgcttgtggaattctgtatgcagaacttcttaaatctacggttcggtgtcctattgaacctgtagagagaaagaaatgaagaagctatt 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31180146 gattggatgaatgcttgtggaattctgtatgcagaacttcttaaatctatggttcggtgtcctattgaacctgtagagagaaagaaatgaagaagctatt 31180245  T
Q  402 ccaag-aaaaagaaatgtcagggaggacaaaactataaaaatcctcaagacaaccatttcattacg 466  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31180246 ccaagaaaaaagaaatgtcagggaggacaaaactataaaaatcctcaagacaaccatttcattacg 31180311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 7 - 255
Target Start/End: Original strand, 31002416 - 31002664
Alignment:
Q  7 aacctgaataatagttgatgacctagtttgccttatatgtctgaatttatcacgagcacgtcgagcagccatagcctgaaaaactgactgtaagacaacg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  31002416 aacctgaataatagttgatgacctagtttgccttatatgtctgaatttatcacgagcacgtcgagcagccattgcctgaaaacctgactgtaagacaacg 31002515  T
Q  107 acagaaatctttatttcacagtagcattttctggctaatcttccacgtgtataggcttgaattttgatggtagctgctttcctcttcatgtgataatatt 206  Q
    |||||| |||| |||||| | |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31002516 acagaagtcttcatttcagaatagcattttctggctattcttccacgtgtataggcttgaattttgatggcagctgctttcctcttcatgtgataatatt 31002615  T
Q  207 gtctccgtgccagttctcctaaatatcacaaaaataaagtatttcagga 255  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31002616 gtctccgtgccagttctcctaaaaatcacaaaaataaagtatttcagga 31002664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 284 - 447
Target Start/End: Original strand, 31002654 - 31002816
Alignment:
Q  284 gtatttcaggaatatattgattggatgaatgcttgtggaattctgtatgcagaacttcttaaatctacggttcggtgtcctattgaacctgtagagagaa 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| |||||||||||    
T  31002654 gtatttcaggaatatattgattggatgaatgcttgtggaattctgtatgtagaacttcttaaatctatggttcggtgccctattgaacatgtagagagaa 31002753  T
Q  384 agaaatgaagaagctattccaagaaaaagaaatgtcagggaggacaaaactataaaaatcctca 447  Q
    ||||||||  ||||| | | || |||||||||||||||||||||||||||||||||||||||||    
T  31002754 agaaatgactaagct-tccaaaaaaaaagaaatgtcagggaggacaaaactataaaaatcctca 31002816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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