View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4596-Insertion-9 (Length: 370)
Name: NF4596-Insertion-9
Description: NF4596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4596-Insertion-9 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 8 - 370
Target Start/End: Original strand, 37008516 - 37008878
Alignment:
| Q |
8 |
ctgatttccataagcatcatcttttacagcatcatagaatcgttgtggacattgagcaaatgcgacttctttttctccctttgaatccaacaaaatgcaa |
107 |
Q |
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| T |
37008516 |
ctgatttccataagcatcatcttttaccgcatcatagaatcgttgtggacattgagcaaatgcaacttctttttctccctttgaatccaacaaaatgcaa |
37008615 |
T |
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| Q |
108 |
agggcatgtagtacaatcttagaattgtttacatacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtctgta |
207 |
Q |
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| T |
37008616 |
agggcatgtagtacaatcttagaattgttcacatacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtctgta |
37008715 |
T |
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| Q |
208 |
tacaatacacattatgagaacttttgaatcgaaattaaggaaacacattgccttattacaatgttgtaatgaaagatcaacaattcaaggagttgattga |
307 |
Q |
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| T |
37008716 |
tacaatacacattatgagaacttttgaatcgaaattaaggaaacacattgccttattacaatgttgtaatgaaagattaacaattcaaggagttgattga |
37008815 |
T |
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| Q |
308 |
agaaatataaatgttaccaagacattcattgcaccagctttgtgatgatgtggttgttttggc |
370 |
Q |
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| T |
37008816 |
agaaatataaatgttaccaagacattcattgcaccagctttgtgatgatgtggttgttttggc |
37008878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 37025698 - 37025896
Alignment:
| Q |
8 |
ctgatttccataagcatcatcttttacagcatcatagaatcgttgtggacattgagcaaatgcgacttctttttctccctttgaatccaacaaaatgcaa |
107 |
Q |
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| T |
37025698 |
ctgatttccaaaaggatcgtcttttagaccatcatagaattgttggggacattgaacaaatgcaacttccttttccccttttgaatctaacaaaatgcac |
37025797 |
T |
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| Q |
108 |
agggcatgtagtacaatcttagaattgtttacatacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtctgt |
206 |
Q |
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| T |
37025798 |
aaggcgtgtagagcaatcttaggattgttcacgtgcatgtcacaatctaagttcaatatgaaaggagcatttgtcatcattccagagactcttgtctgt |
37025896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 205
Target Start/End: Original strand, 37044777 - 37044892
Alignment:
| Q |
90 |
gaatccaacaaaatgcaaagggcatgtagtacaatcttagaattgtttacatacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatc |
189 |
Q |
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| T |
37044777 |
gaatccaccaaaatgcaaatagcatgttgcataatcttgggattgttcacaaccatgtcacagtctacgttcaacataaaaggagcattggtcatcaatc |
37044876 |
T |
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| Q |
190 |
cagagactcttgtctg |
205 |
Q |
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| T |
37044877 |
cagagactcttgtctg |
37044892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 205
Target Start/End: Complemental strand, 17657812 - 17657647
Alignment:
| Q |
40 |
catagaatcgttgtggacattgagcaaatgcgacttctttttctccctttgaatccaacaaaatgcaaagggcatgtagtacaatcttagaattgtttac |
139 |
Q |
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| T |
17657812 |
catagaattgctggggacattgagcaaaagctacttctttttcccctttggagtcaagcaaaatgcacaaggcatgcataacaatatttggattgtttac |
17657713 |
T |
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| Q |
140 |
atacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtctg |
205 |
Q |
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| T |
17657712 |
aaacatgtcacaatccacgttcaacatgaagggtgcattggtaatcaacccagagactcttgtctg |
17657647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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