View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4596_high_4 (Length: 394)
Name: NF4596_high_4
Description: NF4596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4596_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 29 - 258
Target Start/End: Complemental strand, 26969351 - 26969122
Alignment:
| Q |
29 |
aaggcaaaggaaggaaaagatgctaccatgaataagatgggtgagtataaggattatacagctgagaaggcgaaggaagggaaggataatacagcatgga |
128 |
Q |
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| T |
26969351 |
aaggcgaaagaagggaaagatgccaccatgaataagatgggtgagtataaggattatacagctgagaaggcgaaggaagggaaggataatacagcgtgga |
26969252 |
T |
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| Q |
129 |
agattggtgagatgaaagactctgctgttgatgcggcgaaacgggctatgggttacttgggtgacaagaaagaggaagctaaggagaaaactgcagagac |
228 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26969251 |
agattggtgagatgaaggactctgctgttgatgcggcgaaacgggctatgggttacttgggtgacaagaaagaggaagctaaacagaaaactgcagagac |
26969152 |
T |
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| Q |
229 |
agcggaagctgctaaacagaaaactgcaga |
258 |
Q |
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||| |||||||||||||||||||||||||| |
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| T |
26969151 |
agcagaagctgctaaacagaaaactgcaga |
26969122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 213 - 372
Target Start/End: Complemental strand, 26969134 - 26968975
Alignment:
| Q |
213 |
agaaaactgcagagacagcggaagctgctaaacagaaaactgcagaaaccactgaggctgctaagcaaaagacagtagaggcaaaagacaagaccaaggt |
312 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| || | || |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26969134 |
agaaaactgcagagacagcagaagctgctaaacagaaaactgcagagacagcagaagctgctaaacaaaagacagtagaggcaaaagacaagaccaaggt |
26969035 |
T |
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| Q |
313 |
aacaaatttgaatttatggtagtatatgtttttgatgtttgagatatttattgatcagtg |
372 |
Q |
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| T |
26969034 |
aacaaatttgaatttatggtagtatatgtttttgatgtttgagatatttattgattagtg |
26968975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 26969445 - 26969335
Alignment:
| Q |
1 |
tggggagtacaaagactatgctgcggaaaaggcaaaggaaggaaaagatgctaccatgaataagatgggtgagtataaggattatacagctgagaaggcg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26969445 |
tggggagtacaaagactatgctgcggaaaaggcaaaggaaggaaaagatgctaccatgaataagatgggtgagtataaggattatacggctgagaaggcg |
26969346 |
T |
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| Q |
101 |
aaggaagggaa |
111 |
Q |
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|| |||||||| |
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| T |
26969345 |
aaagaagggaa |
26969335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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