View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4596_low_3 (Length: 415)
Name: NF4596_low_3
Description: NF4596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4596_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 40540078 - 40539681
Alignment:
| Q |
1 |
tatcacagaaaggttagcaaggtttccaataccaacgggaattgaaccatttaaactattgttattgagacgcaaatcttccaaaggattaatttgaaac |
100 |
Q |
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| T |
40540078 |
tatcacagaaaggttagcaaggtttccaataccaacgggaattgaaccatttaaactattgttattgagacgcaaatcttccaaaggattaatttgaaac |
40539979 |
T |
|
| Q |
101 |
aaggattgaggaatttcacctctgaaactgtttacagaaagatacaagtactgaagcatgctacaattgcttaattctgagggaatttcaccactgaaat |
200 |
Q |
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| T |
40539978 |
aaggattgaggaatttcacctctgaaactgtttacagaaagatacaagtactgaagcatgctacaattgcttaattctgagggaatttcaccactgaaat |
40539879 |
T |
|
| Q |
201 |
tgttttcagaaagatccaagtactgaagcatattacaattgcttaactctataggaatttcacccgagagatcattgattgacaagtctagtaattgaag |
300 |
Q |
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| T |
40539878 |
tgttttcagaaagatccaagtactgaagcatattacaattgcttaactctataggaatttcacccgagagatcattgattgacaagtctagtaattgaag |
40539779 |
T |
|
| Q |
301 |
gtgaatcaactttccaatttcaggtcctaattgacctgaaattgaatgatcacttaggcttagagatgttacatttagggaatcatcactacactcca |
398 |
Q |
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| T |
40539778 |
gtgaatcaactttccaatttcaggtcctaattgacctgaaattgaatgatcacttaggcttagagatgttacatttagggaatcatcactacactcca |
40539681 |
T |
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