View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4596_low_6 (Length: 297)

Name: NF4596_low_6
Description: NF4596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4596_low_6
NF4596_low_6
[»] chr4 (22 HSPs)
chr4 (178-280)||(1229726-1229828)
chr4 (80-113)||(1031754-1031787)
chr4 (80-113)||(31240647-31240680)
chr4 (80-112)||(51318703-51318735)
chr4 (80-112)||(54800998-54801030)
chr4 (82-113)||(6370979-6371010)
chr4 (82-113)||(11997684-11997715)
chr4 (82-113)||(15596395-15596426)
chr4 (82-113)||(26885290-26885321)
chr4 (82-113)||(37547064-37547095)
chr4 (82-112)||(4896541-4896571)
chr4 (82-112)||(11064130-11064160)
chr4 (82-112)||(26440676-26440706)
chr4 (82-112)||(34116581-34116611)
chr4 (82-112)||(41119511-41119541)
chr4 (82-112)||(46173550-46173580)
chr4 (80-113)||(35332705-35332738)
chr4 (84-113)||(51389117-51389146)
chr4 (84-113)||(53091262-53091291)
chr4 (80-112)||(5234499-5234531)
chr4 (80-112)||(31804368-31804400)
chr4 (85-113)||(44165908-44165936)
[»] chr5 (10 HSPs)
chr5 (80-113)||(36581504-36581537)
chr5 (82-113)||(19127123-19127154)
chr5 (82-113)||(34381011-34381042)
chr5 (82-113)||(39595271-39595302)
chr5 (82-112)||(6865817-6865847)
chr5 (82-112)||(23991175-23991205)
chr5 (82-112)||(28811429-28811459)
chr5 (82-112)||(36713219-36713249)
chr5 (82-110)||(12910786-12910814)
chr5 (80-112)||(35814453-35814485)
[»] chr3 (27 HSPs)
chr3 (80-113)||(31176479-31176512)
chr3 (80-112)||(9027873-9027905)
chr3 (80-112)||(43409401-43409433)
chr3 (82-113)||(14957835-14957866)
chr3 (82-113)||(20380930-20380961)
chr3 (82-113)||(51464313-51464344)
chr3 (82-112)||(108431-108461)
chr3 (82-112)||(1901967-1901997)
chr3 (82-112)||(1911413-1911443)
chr3 (82-112)||(3483132-3483162)
chr3 (82-112)||(5398918-5398948)
chr3 (82-112)||(12792638-12792668)
chr3 (82-112)||(18169157-18169187)
chr3 (82-112)||(20215948-20215978)
chr3 (82-112)||(34607961-34607991)
chr3 (82-112)||(35272027-35272057)
chr3 (82-112)||(41877652-41877682)
chr3 (82-112)||(48945847-48945877)
chr3 (80-109)||(14207378-14207407)
chr3 (80-109)||(14215126-14215155)
chr3 (80-112)||(29800588-29800620)
chr3 (84-112)||(34271533-34271561)
chr3 (84-112)||(43176202-43176230)
chr3 (80-112)||(43499600-43499632)
chr3 (80-112)||(47849672-47849704)
chr3 (85-113)||(50294156-50294184)
chr3 (80-112)||(55344335-55344367)
[»] chr2 (17 HSPs)
chr2 (80-113)||(12600047-12600080)
chr2 (80-112)||(13553147-13553179)
chr2 (82-113)||(30856806-30856837)
chr2 (82-112)||(4738613-4738643)
chr2 (82-112)||(5167783-5167813)
chr2 (82-112)||(6365186-6365216)
chr2 (82-112)||(15283291-15283321)
chr2 (82-112)||(33296112-33296142)
chr2 (82-112)||(36132974-36133004)
chr2 (82-112)||(36435681-36435711)
chr2 (82-112)||(41040266-41040296)
chr2 (82-112)||(42283280-42283310)
chr2 (80-112)||(13711061-13711093)
chr2 (80-112)||(22966786-22966818)
chr2 (80-112)||(34442113-34442145)
chr2 (80-112)||(35792495-35792527)
chr2 (80-112)||(39247502-39247534)
[»] chr8 (12 HSPs)
chr8 (80-112)||(32725819-32725851)
chr8 (80-112)||(40842014-40842046)
chr8 (82-113)||(1796495-1796526)
chr8 (82-112)||(5502371-5502401)
chr8 (82-112)||(8841030-8841060)
chr8 (82-112)||(12732842-12732872)
chr8 (82-112)||(22852880-22852910)
chr8 (82-112)||(28927681-28927711)
chr8 (82-112)||(45101396-45101426)
chr8 (84-113)||(1370317-1370346)
chr8 (80-112)||(69630-69662)
chr8 (80-112)||(39021482-39021514)
[»] chr7 (13 HSPs)
chr7 (80-112)||(38023463-38023495)
chr7 (80-112)||(43079671-43079703)
chr7 (82-113)||(31982056-31982087)
chr7 (82-112)||(2469703-2469733)
chr7 (82-112)||(22330661-22330691)
chr7 (82-112)||(37352020-37352050)
chr7 (82-112)||(41966332-41966362)
chr7 (80-113)||(29763829-29763862)
chr7 (80-112)||(18157224-18157256)
chr7 (82-110)||(28596908-28596936)
chr7 (84-112)||(30941178-30941206)
chr7 (84-112)||(42942422-42942450)
chr7 (80-112)||(43025809-43025841)
[»] scaffold0026 (1 HSPs)
scaffold0026 (82-113)||(113624-113655)
[»] chr6 (5 HSPs)
chr6 (82-113)||(32457293-32457324)
chr6 (82-112)||(30796116-30796146)
chr6 (82-111)||(6435037-6435066)
chr6 (80-112)||(8173351-8173383)
chr6 (80-112)||(32253780-32253812)
[»] chr1 (14 HSPs)
chr1 (82-113)||(5309081-5309112)
chr1 (82-113)||(32821634-32821665)
chr1 (82-112)||(25302684-25302714)
chr1 (82-112)||(31427998-31428028)
chr1 (82-112)||(45740585-45740615)
chr1 (82-112)||(49425738-49425768)
chr1 (82-112)||(49453491-49453521)
chr1 (82-112)||(50226920-50226950)
chr1 (84-113)||(25098831-25098860)
chr1 (82-111)||(32966268-32966297)
chr1 (80-113)||(45333355-45333388)
chr1 (80-112)||(586899-586931)
chr1 (80-112)||(27352630-27352662)
chr1 (80-112)||(29489398-29489430)
[»] scaffold0011 (2 HSPs)
scaffold0011 (82-112)||(219705-219735)
scaffold0011 (80-113)||(18594-18627)
[»] scaffold0131 (1 HSPs)
scaffold0131 (82-111)||(15575-15604)
[»] scaffold0330 (1 HSPs)
scaffold0330 (80-112)||(4041-4073)
[»] scaffold0018 (1 HSPs)
scaffold0018 (80-112)||(36002-36034)
[»] scaffold0003 (1 HSPs)
scaffold0003 (80-112)||(88808-88840)


Alignment Details
Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 178 - 280
Target Start/End: Original strand, 1229726 - 1229828
Alignment:
Q  178 gtgtgtgttttattttggttataggtatcaaattatcaagaggagctcaaagggatggaaggccaatcaaaagaagaatatattggatccttaagaaggt 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1229726 gtgtgtgttttattttggttataggtatcaaattatcaagaggagctcaaagggatggaaggccaatcaaaagaagaatatatcggatccttaagaaggt 1229825  T
Q  278 ttg 280  Q
    |||    
T  1229826 ttg 1229828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 1031787 - 1031754
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||||||||||||||||||||||||||||    
T  1031787 tatcacaaagtggttgtacaaatatcatttctca 1031754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 31240680 - 31240647
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||||||||||||||||||||||||||||    
T  31240680 tatcacaaagtggttgtacaaatatcatttctca 31240647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 51318735 - 51318703
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||||    
T  51318735 tatcacaaagtggttgtacaaatatcatttctc 51318703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 54801030 - 54800998
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||||    
T  54801030 tatcacaaagtggttgtacaaatatcatttctc 54800998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 113
Target Start/End: Complemental strand, 6371010 - 6370979
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||||||||||||||||||||||||||    
T  6371010 tcacaaagtggttgtacaaatatcatttctca 6370979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 113
Target Start/End: Complemental strand, 11997715 - 11997684
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||||||||||||||||||||||||||    
T  11997715 tcacaaagtggttgtacaaatatcatttctca 11997684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 113
Target Start/End: Complemental strand, 15596426 - 15596395
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||||||||||||||||||||||||||    
T  15596426 tcacaaagtggttgtacaaatatcatttctca 15596395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 113
Target Start/End: Complemental strand, 26885321 - 26885290
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||||||||||||||||||||||||||    
T  26885321 tcacaaagtggttgtacaaatatcatttctca 26885290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 113
Target Start/End: Complemental strand, 37547095 - 37547064
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||||||||||||||||||||||||||    
T  37547095 tcacaaagtggttgtacaaatatcatttctca 37547064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 4896541 - 4896571
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  4896541 tcacaaagtggttgtacaaatatcatttctc 4896571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 11064130 - 11064160
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  11064130 tcacaaagtggttgtacaaatatcatttctc 11064160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Complemental strand, 26440706 - 26440676
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  26440706 tcacaaagtggttgtacaaatatcatttctc 26440676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 34116581 - 34116611
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  34116581 tcacaaagtggttgtacaaatatcatttctc 34116611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 41119511 - 41119541
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  41119511 tcacaaagtggttgtacaaatatcatttctc 41119541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Complemental strand, 46173580 - 46173550
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  46173580 tcacaaagtggttgtacaaatatcatttctc 46173550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 35332738 - 35332705
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctca 113  Q
    ||||| ||||||||||||||||||||||||||||    
T  35332738 tatcataaagtggttgtacaaatatcatttctca 35332705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 113
Target Start/End: Original strand, 51389117 - 51389146
Alignment:
Q  84 acaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||||||||||||||||||||||||    
T  51389117 acaaagtggttgtacaaatatcatttctca 51389146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 113
Target Start/End: Original strand, 53091262 - 53091291
Alignment:
Q  84 acaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||||||||||||||||||||||||    
T  53091262 acaaagtggttgtacaaatatcatttctca 53091291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 5234499 - 5234531
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||| ||||||||||||||||||||    
T  5234499 tatcacaaagtgattgtacaaatatcatttctc 5234531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 31804368 - 31804400
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||| ||||||||||||||||||||    
T  31804368 tatcacaaagtgattgtacaaatatcatttctc 31804400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 113
Target Start/End: Complemental strand, 44165936 - 44165908
Alignment:
Q  85 caaagtggttgtacaaatatcatttctca 113  Q
    |||||||||||||||||||||||||||||    
T  44165936 caaagtggttgtacaaatatcatttctca 44165908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 36581504 - 36581537
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||||||||||||||||||||||||||||    
T  36581504 tatcacaaagtggttgtacaaatatcatttctca 36581537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 113
Target Start/End: Complemental strand, 19127154 - 19127123
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||||||||||||||||||||||||||    
T  19127154 tcacaaagtggttgtacaaatatcatttctca 19127123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 113
Target Start/End: Complemental strand, 34381042 - 34381011
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||||||||||||||||||||||||||    
T  34381042 tcacaaagtggttgtacaaatatcatttctca 34381011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 113
Target Start/End: Complemental strand, 39595302 - 39595271
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||||||||||||||||||||||||||    
T  39595302 tcacaaagtggttgtacaaatatcatttctca 39595271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 6865817 - 6865847
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  6865817 tcacaaagtggttgtacaaatatcatttctc 6865847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 23991175 - 23991205
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  23991175 tcacaaagtggttgtacaaatatcatttctc 23991205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Complemental strand, 28811459 - 28811429
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  28811459 tcacaaagtggttgtacaaatatcatttctc 28811429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 36713219 - 36713249
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  36713219 tcacaaagtggttgtacaaatatcatttctc 36713249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 110
Target Start/End: Complemental strand, 12910814 - 12910786
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttc 110  Q
    |||||||||||||||||||||||||||||    
T  12910814 tcacaaagtggttgtacaaatatcatttc 12910786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 35814485 - 35814453
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    ||||||||| |||||||||||||||||||||||    
T  35814485 tatcacaaaatggttgtacaaatatcatttctc 35814453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 31176479 - 31176512
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||||||||||||||||||||||||||||    
T  31176479 tatcacaaagtggttgtacaaatatcatttctca 31176512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 9027905 - 9027873
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||||    
T  9027905 tatcacaaagtggttgtacaaatatcatttctc 9027873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 43409401 - 43409433
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||||    
T  43409401 tatcacaaagtggttgtacaaatatcatttctc 43409433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 113
Target Start/End: Complemental strand, 14957866 - 14957835
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||||||||||||||||||||||||||    
T  14957866 tcacaaagtggttgtacaaatatcatttctca 14957835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 113
Target Start/End: Original strand, 20380930 - 20380961
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||||||||||||||||||||||||||    
T  20380930 tcacaaagtggttgtacaaatatcatttctca 20380961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 113
Target Start/End: Original strand, 51464313 - 51464344
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||||||||||||||||||||||||||    
T  51464313 tcacaaagtggttgtacaaatatcatttctca 51464344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Complemental strand, 108461 - 108431
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  108461 tcacaaagtggttgtacaaatatcatttctc 108431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 1901967 - 1901997
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  1901967 tcacaaagtggttgtacaaatatcatttctc 1901997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 1911413 - 1911443
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  1911413 tcacaaagtggttgtacaaatatcatttctc 1911443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Complemental strand, 3483162 - 3483132
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  3483162 tcacaaagtggttgtacaaatatcatttctc 3483132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Complemental strand, 5398948 - 5398918
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  5398948 tcacaaagtggttgtacaaatatcatttctc 5398918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Complemental strand, 12792668 - 12792638
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  12792668 tcacaaagtggttgtacaaatatcatttctc 12792638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Complemental strand, 18169187 - 18169157
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  18169187 tcacaaagtggttgtacaaatatcatttctc 18169157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Complemental strand, 20215978 - 20215948
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  20215978 tcacaaagtggttgtacaaatatcatttctc 20215948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 34607961 - 34607991
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  34607961 tcacaaagtggttgtacaaatatcatttctc 34607991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Complemental strand, 35272057 - 35272027
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  35272057 tcacaaagtggttgtacaaatatcatttctc 35272027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 41877652 - 41877682
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  41877652 tcacaaagtggttgtacaaatatcatttctc 41877682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Complemental strand, 48945877 - 48945847
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  48945877 tcacaaagtggttgtacaaatatcatttctc 48945847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 109
Target Start/End: Complemental strand, 14207407 - 14207378
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcattt 109  Q
    ||||||||||||||||||||||||||||||    
T  14207407 tatcacaaagtggttgtacaaatatcattt 14207378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 109
Target Start/End: Complemental strand, 14215155 - 14215126
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcattt 109  Q
    ||||||||||||||||||||||||||||||    
T  14215155 tatcacaaagtggttgtacaaatatcattt 14215126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 29800588 - 29800620
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    ||||||||||| |||||||||||||||||||||    
T  29800588 tatcacaaagtagttgtacaaatatcatttctc 29800620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 112
Target Start/End: Original strand, 34271533 - 34271561
Alignment:
Q  84 acaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||    
T  34271533 acaaagtggttgtacaaatatcatttctc 34271561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 112
Target Start/End: Complemental strand, 43176230 - 43176202
Alignment:
Q  84 acaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||    
T  43176230 acaaagtggttgtacaaatatcatttctc 43176202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 43499600 - 43499632
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    ||||| |||||||||||||||||||||||||||    
T  43499600 tatcataaagtggttgtacaaatatcatttctc 43499632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 47849704 - 47849672
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    ||||||||| |||||||||||||||||||||||    
T  47849704 tatcacaaaatggttgtacaaatatcatttctc 47849672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 113
Target Start/End: Original strand, 50294156 - 50294184
Alignment:
Q  85 caaagtggttgtacaaatatcatttctca 113  Q
    |||||||||||||||||||||||||||||    
T  50294156 caaagtggttgtacaaatatcatttctca 50294184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 55344335 - 55344367
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    ||||||||| |||||||||||||||||||||||    
T  55344335 tatcacaaaatggttgtacaaatatcatttctc 55344367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 12600080 - 12600047
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||||||||||||||||||||||||||||    
T  12600080 tatcacaaagtggttgtacaaatatcatttctca 12600047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 13553179 - 13553147
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||||    
T  13553179 tatcacaaagtggttgtacaaatatcatttctc 13553147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 113
Target Start/End: Complemental strand, 30856837 - 30856806
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||||||||||||||||||||||||||    
T  30856837 tcacaaagtggttgtacaaatatcatttctca 30856806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 4738613 - 4738643
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  4738613 tcacaaagtggttgtacaaatatcatttctc 4738643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 5167783 - 5167813
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  5167783 tcacaaagtggttgtacaaatatcatttctc 5167813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Complemental strand, 6365216 - 6365186
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  6365216 tcacaaagtggttgtacaaatatcatttctc 6365186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 15283291 - 15283321
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  15283291 tcacaaagtggttgtacaaatatcatttctc 15283321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 33296112 - 33296142
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  33296112 tcacaaagtggttgtacaaatatcatttctc 33296142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Complemental strand, 36133004 - 36132974
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  36133004 tcacaaagtggttgtacaaatatcatttctc 36132974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Complemental strand, 36435711 - 36435681
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  36435711 tcacaaagtggttgtacaaatatcatttctc 36435681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Complemental strand, 41040296 - 41040266
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  41040296 tcacaaagtggttgtacaaatatcatttctc 41040266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 42283280 - 42283310
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  42283280 tcacaaagtggttgtacaaatatcatttctc 42283310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 13711093 - 13711061
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    ||||| |||||||||||||||||||||||||||    
T  13711093 tatcaaaaagtggttgtacaaatatcatttctc 13711061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 22966818 - 22966786
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    ||||| |||||||||||||||||||||||||||    
T  22966818 tatcaaaaagtggttgtacaaatatcatttctc 22966786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 34442145 - 34442113
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    ||||| |||||||||||||||||||||||||||    
T  34442145 tatcataaagtggttgtacaaatatcatttctc 34442113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 35792495 - 35792527
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    ||||||||||| |||||||||||||||||||||    
T  35792495 tatcacaaagttgttgtacaaatatcatttctc 35792527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 39247502 - 39247534
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    ||||||||| |||||||||||||||||||||||    
T  39247502 tatcacaaaatggttgtacaaatatcatttctc 39247534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 32725819 - 32725851
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||||    
T  32725819 tatcacaaagtggttgtacaaatatcatttctc 32725851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 40842046 - 40842014
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||||    
T  40842046 tatcacaaagtggttgtacaaatatcatttctc 40842014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 113
Target Start/End: Complemental strand, 1796526 - 1796495
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||||||||||||||||||||||||||    
T  1796526 tcacaaagtggttgtacaaatatcatttctca 1796495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Complemental strand, 5502401 - 5502371
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  5502401 tcacaaagtggttgtacaaatatcatttctc 5502371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Complemental strand, 8841060 - 8841030
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  8841060 tcacaaagtggttgtacaaatatcatttctc 8841030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Complemental strand, 12732872 - 12732842
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  12732872 tcacaaagtggttgtacaaatatcatttctc 12732842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 22852880 - 22852910
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  22852880 tcacaaagtggttgtacaaatatcatttctc 22852910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Complemental strand, 28927711 - 28927681
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  28927711 tcacaaagtggttgtacaaatatcatttctc 28927681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Complemental strand, 45101426 - 45101396
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  45101426 tcacaaagtggttgtacaaatatcatttctc 45101396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 113
Target Start/End: Original strand, 1370317 - 1370346
Alignment:
Q  84 acaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||||||||||||||||||||||||    
T  1370317 acaaagtggttgtacaaatatcatttctca 1370346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 69630 - 69662
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||| ||||||||||||||||||||    
T  69630 tatcacaaagtgattgtacaaatatcatttctc 69662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 39021482 - 39021514
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    ||||||||| |||||||||||||||||||||||    
T  39021482 tatcacaaaatggttgtacaaatatcatttctc 39021514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 38023463 - 38023495
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||||    
T  38023463 tatcacaaagtggttgtacaaatatcatttctc 38023495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 43079671 - 43079703
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||||    
T  43079671 tatcacaaagtggttgtacaaatatcatttctc 43079703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 113
Target Start/End: Complemental strand, 31982087 - 31982056
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||||||||||||||||||||||||||    
T  31982087 tcacaaagtggttgtacaaatatcatttctca 31982056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Complemental strand, 2469733 - 2469703
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  2469733 tcacaaagtggttgtacaaatatcatttctc 2469703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 22330661 - 22330691
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  22330661 tcacaaagtggttgtacaaatatcatttctc 22330691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 37352020 - 37352050
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  37352020 tcacaaagtggttgtacaaatatcatttctc 37352050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Complemental strand, 41966362 - 41966332
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  41966362 tcacaaagtggttgtacaaatatcatttctc 41966332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 29763862 - 29763829
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||| ||||||||||||||||||||||||    
T  29763862 tatcacaaaatggttgtacaaatatcatttctca 29763829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 18157224 - 18157256
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||| ||||    
T  18157224 tatcacaaagtggttgtacaaatatcatgtctc 18157256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 110
Target Start/End: Complemental strand, 28596936 - 28596908
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttc 110  Q
    |||||||||||||||||||||||||||||    
T  28596936 tcacaaagtggttgtacaaatatcatttc 28596908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 112
Target Start/End: Complemental strand, 30941206 - 30941178
Alignment:
Q  84 acaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||    
T  30941206 acaaagtggttgtacaaatatcatttctc 30941178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 112
Target Start/End: Original strand, 42942422 - 42942450
Alignment:
Q  84 acaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||    
T  42942422 acaaagtggttgtacaaatatcatttctc 42942450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 43025841 - 43025809
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    ||||| |||||||||||||||||||||||||||    
T  43025841 tatcaaaaagtggttgtacaaatatcatttctc 43025809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 113
Target Start/End: Complemental strand, 113655 - 113624
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||||||||||||||||||||||||||    
T  113655 tcacaaagtggttgtacaaatatcatttctca 113624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 113
Target Start/End: Original strand, 32457293 - 32457324
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||||||||||||||||||||||||||    
T  32457293 tcacaaagtggttgtacaaatatcatttctca 32457324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 30796116 - 30796146
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  30796116 tcacaaagtggttgtacaaatatcatttctc 30796146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 111
Target Start/End: Complemental strand, 6435066 - 6435037
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttct 111  Q
    ||||||||||||||||||||||||||||||    
T  6435066 tcacaaagtggttgtacaaatatcatttct 6435037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 8173351 - 8173383
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||| ||||||||||||||||    
T  8173351 tatcacaaagtggttgcacaaatatcatttctc 8173383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 32253812 - 32253780
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    ||||| |||||||||||||||||||||||||||    
T  32253812 tatcaaaaagtggttgtacaaatatcatttctc 32253780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 113
Target Start/End: Original strand, 5309081 - 5309112
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||||||||||||||||||||||||||    
T  5309081 tcacaaagtggttgtacaaatatcatttctca 5309112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 113
Target Start/End: Complemental strand, 32821665 - 32821634
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||||||||||||||||||||||||||    
T  32821665 tcacaaagtggttgtacaaatatcatttctca 32821634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 25302684 - 25302714
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  25302684 tcacaaagtggttgtacaaatatcatttctc 25302714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 31427998 - 31428028
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  31427998 tcacaaagtggttgtacaaatatcatttctc 31428028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 45740585 - 45740615
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  45740585 tcacaaagtggttgtacaaatatcatttctc 45740615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Complemental strand, 49425768 - 49425738
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  49425768 tcacaaagtggttgtacaaatatcatttctc 49425738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Complemental strand, 49453521 - 49453491
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  49453521 tcacaaagtggttgtacaaatatcatttctc 49453491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 50226920 - 50226950
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  50226920 tcacaaagtggttgtacaaatatcatttctc 50226950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 113
Target Start/End: Original strand, 25098831 - 25098860
Alignment:
Q  84 acaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||||||||||||||||||||||||    
T  25098831 acaaagtggttgtacaaatatcatttctca 25098860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 111
Target Start/End: Complemental strand, 32966297 - 32966268
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttct 111  Q
    ||||||||||||||||||||||||||||||    
T  32966297 tcacaaagtggttgtacaaatatcatttct 32966268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 45333388 - 45333355
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctca 113  Q
    ||||| ||||||||||||||||||||||||||||    
T  45333388 tatcaaaaagtggttgtacaaatatcatttctca 45333355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 586931 - 586899
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||| ||||||||||||||||||||    
T  586931 tatcacaaagtgattgtacaaatatcatttctc 586899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 27352662 - 27352630
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    ||||||||| |||||||||||||||||||||||    
T  27352662 tatcacaaaatggttgtacaaatatcatttctc 27352630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 29489398 - 29489430
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    ||||||||| |||||||||||||||||||||||    
T  29489398 tatcacaaaatggttgtacaaatatcatttctc 29489430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 219705 - 219735
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttctc 112  Q
    |||||||||||||||||||||||||||||||    
T  219705 tcacaaagtggttgtacaaatatcatttctc 219735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 18627 - 18594
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctca 113  Q
    ||||||||| ||||||||||||||||||||||||    
T  18627 tatcacaaattggttgtacaaatatcatttctca 18594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 111
Target Start/End: Original strand, 15575 - 15604
Alignment:
Q  82 tcacaaagtggttgtacaaatatcatttct 111  Q
    ||||||||||||||||||||||||||||||    
T  15575 tcacaaagtggttgtacaaatatcatttct 15604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 4073 - 4041
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    ||||||||| |||||||||||||||||||||||    
T  4073 tatcacaaaatggttgtacaaatatcatttctc 4041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 36034 - 36002
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    ||||||||||| |||||||||||||||||||||    
T  36034 tatcacaaagtagttgtacaaatatcatttctc 36002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 88840 - 88808
Alignment:
Q  80 tatcacaaagtggttgtacaaatatcatttctc 112  Q
    ||||||||| |||||||||||||||||||||||    
T  88840 tatcacaaattggttgtacaaatatcatttctc 88808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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