View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4596_low_7 (Length: 268)
Name: NF4596_low_7
Description: NF4596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4596_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 10220649 - 10220429
Alignment:
| Q |
18 |
attggaaagccaagttgcttcatcatgaatattatggtatcacactatgttatgaatttgcaatagcataaaaactgggggaatgtgccgagcaatgctg |
117 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
10220649 |
attggaaagccaagtttcttaatcatgaatattatggtatcacactatggtatgaatttgcaatagcataaaaactgggggaatgcgccatgcaatgctg |
10220550 |
T |
|
| Q |
118 |
caacattttctacttacttgtaaataaaatataaatggtacaatatgaaatcaggtaaattaaatatgttgagaatatcattcaacagaagaaagattaa |
217 |
Q |
| |
|
|| |||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| || |
|
|
| T |
10220549 |
cagcattttcttcttacatgtaaataaaatataaatggtacgctatgaaatcagctaaattaaatatattgcgaatatcattcaacagaagaaagatgaa |
10220450 |
T |
|
| Q |
218 |
gaaaaacagatacatgatgca |
238 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
10220449 |
gaaaaacagatacatgatgca |
10220429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 68 - 238
Target Start/End: Original strand, 13853368 - 13853538
Alignment:
| Q |
68 |
tatgaatttgcaatagcataaaaactgggggaatgtgccgagcaatgctgcaacattttctacttacttgtaaataaaatataaatggtacaatatgaaa |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13853368 |
tatgaatttgcaatagcataaaaactgggggaatgtgccaagcaatgctgcaacattttcttcttacttgtaaattaaatataaatggtacaatatgaaa |
13853467 |
T |
|
| Q |
168 |
tcaggtaaattaaatatgttgagaatatcattcaacagaagaaagattaagaaaaacagatacatgatgca |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13853468 |
tcaggtaaattaaatatgttgagaatatcattcaacagaagaaagattaagaaaaacagatacatgatgca |
13853538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University