View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4597-Insertion-13 (Length: 78)
Name: NF4597-Insertion-13
Description: NF4597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4597-Insertion-13 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 63; Significance: 4e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-28
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 48279661 - 48279591
Alignment:
| Q |
8 |
taccgcaccatcaacatagcatgaccaccgccatctgctagttaaaaacttagcccccacgcaccgactgc |
78 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
48279661 |
taccgcgccatcaacatagcatgaccaccgccatctcctagttaaaaacttagcccccacgcaccgactgc |
48279591 |
T |
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Target: scaffold0039 (Bit Score: 56; Significance: 7e-24; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 56; E-Value: 7e-24
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 83258 - 83195
Alignment:
| Q |
15 |
ccatcaacatagcatgaccaccgccatctgctagttaaaaacttagcccccacgcaccgactgc |
78 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
83258 |
ccatcaacatagcatgaccaccgccatctcctagttaaaaacttagcccccacgcatcgactgc |
83195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-23
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 29633575 - 29633505
Alignment:
| Q |
8 |
taccgcaccatcaacatagcatgaccaccgccatctgctagttaaaaacttagcccccacgcaccgactgc |
78 |
Q |
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|||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
29633575 |
taccgcgccatcaacatagcaggaccaccgccatctcctagttaaaaacttagcccccatgcaccgactgc |
29633505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-23
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 40389505 - 40389436
Alignment:
| Q |
8 |
taccgcaccatcaacatagcatgaccaccgccatctgctagttaaaaacttagcccccacgcaccgactgc |
78 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
40389505 |
taccgcgccatcaacatagcatgaccaccgccatcttctagttaaaaacttag-ccccacgcaccgactgc |
40389436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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