View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4597-Insertion-2 (Length: 1120)
Name: NF4597-Insertion-2
Description: NF4597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4597-Insertion-2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 856; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 856; E-Value: 0
Query Start/End: Original strand, 7 - 968
Target Start/End: Complemental strand, 12039142 - 12038186
Alignment:
| Q |
7 |
aggaagcttctctatgttgttatgagaaagatctagatacctcaagtacttcacctcttcaatagagctcggaatcgtcttgatccccaagtcatgcata |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12039142 |
aggaagcttctctatgttgttatgagaaagatctagatacctcaagtacttcacctcttcaatagagctcggaatcgtcttgatccccaagtcatgcata |
12039043 |
T |
|
| Q |
107 |
tctaacacgcgcatagccttgaaggtgttaaagatcttatcacaggttgatgttgtcatctgtacctcgtcaggaagccgagggttgtcagtgttgtatg |
206 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12039042 |
tctaacacgcgcatagctttgaaggtgttaaagatcttatcacaggttgatgttgtcatctgtacctcgtcaggaagccgagggttgtcagtgttgtatg |
12038943 |
T |
|
| Q |
207 |
gcaaaagaatggtcctcagatttttaactttctcaaacacacaatctgggatgccacacaacaaatctaaagcataatcaaacgaaactcgtagcattcc |
306 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12038942 |
gcaaaagaatggtcctcagttttttagctttctcaaacacacaatctgggatcccacacaacaaatctaaagcataatcaaacgaaactcgtagcattcc |
12038843 |
T |
|
| Q |
307 |
atcgtgaacaccctcccccatcgactccacggtgatgttttcacgactgtcgatggtgactagccttgcaagtttatgcattaaagggtttattctatat |
406 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12038842 |
atcgtgaacaccctcccccatcgaatccacggtgatgttttcacgactgtcgatggtgactagccttgcaagtttatgcattaacgggtttattctatat |
12038743 |
T |
|
| Q |
407 |
aagtagttgctgtttgtcacaataccaccgtattggttttcgttttcttcttccacttgatgaaaaaccaaaggaacaaagtcgttgaaacaagctcgac |
506 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12038742 |
aagtagttgttgtttgtcacaacaccaccgtattggttttcgttttcttcttccacttgatgaaaaaccaaaggaacaaagtcgttgaaacaagctcgac |
12038643 |
T |
|
| Q |
507 |
caaattgttgttctggattgttgtttgatgaaattgttagaaatccttcagcagtccaaagttgaattaatctctcggcatcaattaaataatcttctgg |
606 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12038642 |
caaattgttgttctggattgttgtttgaggaaattgttagaaatccttcagccgtccaaagttgaattaatctctcggcatcaattaaataatcttctgg |
12038543 |
T |
|
| Q |
607 |
aaacaatgaacaatatgcaaagcacaacttctgatacgtgggaagatcttcgtaatagatatacctgaaactttgtagaaacatcttctctatgtgaggt |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12038542 |
aaacaatgaacaatatgcaaagcacaacttctgatacgtgggaagatcttcgtaatagatatacctgaaactttgtagaaacatcttctctatgtgaggt |
12038443 |
T |
|
| Q |
707 |
tctggttgcagaatcgagccctcgtgattatagagcatcgatgtcgctacgatcactattgcaagagggactccacgacaatccctcacgatctctgatg |
806 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12038442 |
tctggttgcagaatcgagccctcgcgattatagagcatcgctgtcgctacgatcactattgcaagagggactccacgacaatccctcacgatcttaaatg |
12038343 |
T |
|
| Q |
807 |
cggtgcagtgttggctgtaagttgaaactgctccatgaatttcctcaaacaaggaccaagaatcctcttgattaagcccctgcaacttcaaaacatatcc |
906 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12038342 |
tggtgcagtgttggc------ttgaaactgctccatgaatttcctcaaacaaggaccaagaatcctcttgattaagcccctgcaacttcaaaacatgtcc |
12038249 |
T |
|
| Q |
907 |
agcagcaatgttgtctgcgacatggttactacgtgtagtgatgagtatgg-cgtatcagcacg |
968 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
12038248 |
agcagcaatgttgtcggcgacatggttactacgtgtagtaatgagtatggccgtatcagcacg |
12038186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 7 - 667
Target Start/End: Complemental strand, 11828242 - 11827588
Alignment:
| Q |
7 |
aggaagcttctctatgttgttatgagaaagatctagatacctcaagtacttcacctcttcaatagagctcggaatcgtcttgatccccaagtcatgcata |
106 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||| |||||||||||||||||||| | | |
|
|
| T |
11828242 |
aggaagcttctccatgttgttatgtgaaagatctagatacctcaagtacttcacatcctcaatagagcttggaactgtcttgatccccaagtcatgtaga |
11828143 |
T |
|
| Q |
107 |
tctaacacgcgcatagc-----cttgaaggtgttaaagatcttatcacaggttgatgttgtcatctgtacctcgtcaggaagccgagggttgtcagtgtt |
201 |
Q |
| |
|
|| |||||||| |||| ||||||||||| |||||||||||||| ||||| |||||||||| |||||||| ||||| |||||||||| | |||| |
|
|
| T |
11828142 |
tccaacacgcg--tagcgagtacttgaaggtgtcgaagatcttatcacaagttgacgttgtcatctttacctcgtgcggaagacgagggttgttaatgtt |
11828045 |
T |
|
| Q |
202 |
gtatggcaaaagaatggtcctcagatttttaactttctcaaacacacaatctgggatgccacacaacaaatctaaagcataatcaaacgaaactcgtagc |
301 |
Q |
| |
|
||||||||||||||||||||| || || || || ||| |||||| |||| ||||| |||| | | |||||||||| ||| ||||||||||| ||| |
|
|
| T |
11828044 |
gtatggcaaaagaatggtccttagtttctttgctgtctgaaacaccgaatcagggatctcacatgaaagatctaaagcaaaattgaacgaaactcgcagc |
11827945 |
T |
|
| Q |
302 |
attccatcgtgaacaccctcccccatcgactccacggtgatgttttcacgactgtcgatggtgactagccttgcaagtttatgcattaaagggtttattc |
401 |
Q |
| |
|
| || | |||| | |||||||||| ||||||||||||||||| || | || || | ||||| |||||||||||||| | || |||| |
|
|
| T |
11827944 |
gtcccgccacgaactctctcccccatcacatccacggtgatgttttcgtcaccagcaattt---cttgtcttgcgagtttatgcattaaccgattcattc |
11827848 |
T |
|
| Q |
402 |
tatataagtagttgct------gtttgtcacaataccaccgtatt---ggttttcgttttcttcttccacttgatgaaaaaccaaaggaacaaagtcgtt |
492 |
Q |
| |
|
|||||||||||||| | ||| |||||| ||| | ||| | ||| || ||||||||||| ||||||| |||||||||||||||||||| | |
|
|
| T |
11827847 |
tatataagtagttgttcatgttgttcctcacaacaccgcagtacttctggtggtcactttcttcttccgcttgatggaaaaccaaaggaacaaagtcttc |
11827748 |
T |
|
| Q |
493 |
gaaacaagctcgaccaaattgttgttctggattgttgtttgatgaaattgttagaaatccttcagcagtccaaagttgaattaatctctcggcatcaatt |
592 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| | ||||| |||||| ||||||| |||||||| |||||||| |||||||| |
|
|
| T |
11827747 |
gaaacaagcatgaccaaattgttgttctggattgata---------------agaaacccttcaccagtccagagttgaatcaatctctctgcatcaatc |
11827663 |
T |
|
| Q |
593 |
aaataatcttctggaaacaatgaacaatatgcaaagcacaacttctgatacgtgggaagatcttcgtaatagata |
667 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||| |
|
|
| T |
11827662 |
aaataatcttctggaaacaatgaacaatatgcaaagcataatttctgataagtgggaagatcgtcgtaatagata |
11827588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 7 - 348
Target Start/End: Complemental strand, 11860377 - 11860033
Alignment:
| Q |
7 |
aggaagcttctctatgttgttatgagaaagatctagatacctcaagtacttcacctcttcaatagagctcggaatcgtcttgatccccaagtcatgcata |
106 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||| ||||| | | |
|
|
| T |
11860377 |
aggaagcttctctatgttgttatgggaaagatctagatacctcaagtacttcacatcctcaatagagctcggaaccgtcttgatccccaaatcatgtaga |
11860278 |
T |
|
| Q |
107 |
tctaacacgcgcat--agc-cttgaaggtgttaaagatcttatcacaggttgatgttgtcatctgtacctcgtcaggaagccgagggttgtcagtgttgt |
203 |
Q |
| |
|
|| |||||||| | ||| ||||||||||| |||||||||||||| ||||||||||||| || |||||||| |||||||||||||||| | |||||| |
|
|
| T |
11860277 |
tccaacacgcgtagcgagcacttgaaggtgtcgaagatcttatcacaagttgatgttgtcacctttacctcgtacggaagccgagggttgttaatgttgt |
11860178 |
T |
|
| Q |
204 |
atggcaaaagaatggtcctcagatttttaactttctcaaacacacaatctgggatgccacacaacaaatctaaagcataatcaaacgaaactcgtagcat |
303 |
Q |
| |
|
|||||||||||| |||||| || || || |||||| |||||| |||| ||||| |||| | | |||||||||| |||| ||||||||||| ||||| |
|
|
| T |
11860177 |
atggcaaaagaaaggtccttagtttctttgctttctgaaacaccaaatcagggatctcacatgaaagatctaaagcaaaatcgaacgaaactcgcagcat |
11860078 |
T |
|
| Q |
304 |
tccatcgtgaacaccctcccccatcgactccacggtgatgttttc |
348 |
Q |
| |
|
|||||| ||||| | ||||||||| ||||||||||||||||| |
|
|
| T |
11860077 |
tccatcttgaaccctttcccccatcacatccacggtgatgttttc |
11860033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 11902184 - 11902480
Alignment:
| Q |
11 |
agcttctctatgttgttatgagaaagatctagatacctcaagtacttcacctcttcaatagagctcggaatcgtcttgatccccaagtcatgcatatcta |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||| | |||| |||||||||||||| | ||| | |
|
|
| T |
11902184 |
agcttttctatgttgttatgagaaagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtagatcca |
11902283 |
T |
|
| Q |
111 |
acacgcgcatagccttgaaggtgttaaagatcttatcacaggttgatgttgtcatctgtacctcgtcaggaagccgagggttgtcagtgttgtatggcaa |
210 |
Q |
| |
|
||| || | | |||||||||||| ||||||||||| || |||||||||||||||| ||||||| ||||| |||||||||| |||| |||| ||||| |
|
|
| T |
11902284 |
gcacacgtagggacttgaaggtgttgaagatcttatcgcatgttgatgttgtcatcttcacctcgtgtggaaggcgagggttgttagtgctgtacggcaa |
11902383 |
T |
|
| Q |
211 |
aagaatggtcctcagatttttaactttctcaaacacacaa-tctgggatgccacacaacaaatctaaagcataatcaaacgaaactcgtagcattcca |
307 |
Q |
| |
|
||||||||| ||||| || || |||| || |||| |||| |||||||| ||||| ||| ||| |||||| ||||||| ||| |||| | ||||||| |
|
|
| T |
11902384 |
aagaatggttctcagtttctttgctttatcgaaca-acaagtctgggatcccacatgacagatccaaagcaaaatcaaatgaagctcgcaacattcca |
11902480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 450 - 667
Target Start/End: Complemental strand, 11859925 - 11859723
Alignment:
| Q |
450 |
tttcttcttccacttgatgaaaaaccaaaggaacaaagtcgttgaaacaagctcgaccaaattgttgttctggattgttgtttgatgaaattgttagaaa |
549 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| | ||||| |
|
|
| T |
11859925 |
tttcttcttccgcttgatggaaaaccaaaggaacaaagtctttgaaacaagcttgaccaaattgttgttctggattgata---------------agaaa |
11859841 |
T |
|
| Q |
550 |
tccttcagcagtccaaagttgaattaatctctcggcatcaattaaataatcttctggaaacaatgaacaatatgcaaagcacaacttctgatacgtggga |
649 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
11859840 |
cccttcagccgtccagagttgaatcaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcgaagcataacttctgataagtggga |
11859741 |
T |
|
| Q |
650 |
agatcttcgtaatagata |
667 |
Q |
| |
|
|| | |||||||||||| |
|
|
| T |
11859740 |
aggttgtcgtaatagata |
11859723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 11732022 - 11731801
Alignment:
| Q |
7 |
aggaagcttctctatgttgttatgagaaagatctagatacctcaagtacttcacctcttcaatagagctcggaatcgtcttgatccccaagtcatgcata |
106 |
Q |
| |
|
||||||||||||||||||||| || || ||||||||| |||||||||| |||| ||| ||||||||| | || | ||||||||||||||||||| | | |
|
|
| T |
11732022 |
aggaagcttctctatgttgttgtgggatagatctagaaacctcaagtatttcatctcctcaatagaggttggtacaatcttgatccccaagtcatgtaga |
11731923 |
T |
|
| Q |
107 |
tctaacacgcgcatagccttgaaggtgttaaagatcttatcacaggttgatgttgtcatctgtacctcgtcaggaagccgagggttgtcagtg---ttgt |
203 |
Q |
| |
|
|| |||||| |||| | |||||||||||| ||||||||||||||||||| || ||||||| ||||||| |||||||||||||||| | || |||| |
|
|
| T |
11731922 |
tccaacacgtgcatggacttgaaggtgttgaagatcttatcacaggttggcgtcgtcatcttcacctcgtgtggaagccgagggttgttaatgtttttgt |
11731823 |
T |
|
| Q |
204 |
atggcaaaagaatggtcctcag |
225 |
Q |
| |
|
||||||| | |||||||||||| |
|
|
| T |
11731822 |
atggcaataaaatggtcctcag |
11731801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 547 - 663
Target Start/End: Complemental strand, 11731512 - 11731396
Alignment:
| Q |
547 |
aaatccttcagcagtccaaagttgaattaatctctcggcatcaattaaataatcttctggaaacaatgaacaatatgcaaagcacaacttctgatacgtg |
646 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||| || ||||||||||||||||||| ||||||||||||| || | | | ||| |
|
|
| T |
11731512 |
aaatccttcagcaaaccaaagttgaattaatctctcggcatcaatcaaatgatgttctggaaacaatgaacaaaatgcaaagcacaatttataacatgtg |
11731413 |
T |
|
| Q |
647 |
ggaagatcttcgtaata |
663 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
11731412 |
ggaagatcctcgtaata |
11731396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 454 - 636
Target Start/End: Original strand, 11902603 - 11902770
Alignment:
| Q |
454 |
ttcttccacttgatgaaaaaccaaaggaacaaagtcgttgaaacaagctcgaccaaattgttgttctggattgttgtttgatgaaattgttagaaatcct |
553 |
Q |
| |
|
|||||||||||| || |||||||| ||||||||||| |||||||||| ||||| ||||||||||| |||| || || ||||||||| |
|
|
| T |
11902603 |
ttcttccacttgttggaaaaccaacggaacaaagtcattgaaacaaggtcgacaaaattgttgttgtggaatggtg---------------agaaatcct |
11902687 |
T |
|
| Q |
554 |
tcagcagtccaaagttgaattaatctctcggcatcaattaaataatcttctggaaacaatgaacaatatgcaaagcacaactt |
636 |
Q |
| |
|
||||||||||| |||| |||||||||||| |||||||| ||||||||| |||||||||||||||||||||||| || ||||| |
|
|
| T |
11902688 |
tcagcagtccagagttcaattaatctctcagcatcaatcaaataatctcttggaaacaatgaacaatatgcaaaacataactt |
11902770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 838 - 920
Target Start/End: Complemental strand, 11859534 - 11859452
Alignment:
| Q |
838 |
tccatgaatttcctcaaacaaggaccaagaatcctcttgattaagcccctgcaacttcaaaacatatccagcagcaatgttgt |
920 |
Q |
| |
|
||||||||| | || |||||| |||||||| |||||||||||||||||||||||||||||||||| || ||||||||| |||| |
|
|
| T |
11859534 |
tccatgaatctgctgaaacaatgaccaagattcctcttgattaagcccctgcaacttcaaaacatgtctagcagcaattttgt |
11859452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 853 - 954
Target Start/End: Complemental strand, 11827378 - 11827277
Alignment:
| Q |
853 |
aaacaaggaccaagaatcctcttgattaagcccctgcaacttcaaaacatatccagcagcaatgttgtctgcgacatggttactacgtgtagtgatgagt |
952 |
Q |
| |
|
|||||| |||||||| |||| ||||||||||||||||||||||||||||||| |||| |||| |||| ||||||||||| |||| ||| || |||||| |
|
|
| T |
11827378 |
aaacaatgaccaagattccttttgattaagcccctgcaacttcaaaacatatgtagcaccaatattgttggcgacatggttgctacatgtggtaatgagt |
11827279 |
T |
|
| Q |
953 |
at |
954 |
Q |
| |
|
|| |
|
|
| T |
11827278 |
at |
11827277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 546 - 640
Target Start/End: Original strand, 11974974 - 11975068
Alignment:
| Q |
546 |
gaaatccttcagcagtccaaagttgaattaatctctcggcatcaattaaataatcttctggaaacaatgaacaatatgcaaagcacaacttctga |
640 |
Q |
| |
|
|||||||||| || ||| | || ||||||||||||||| ||||||| |||| ||||| ||||||||||||||| || |||| || ||||||||| |
|
|
| T |
11974974 |
gaaatccttctgctgtcaagagatgaattaatctctcgacatcaatcaaatgatcttgaggaaacaatgaacaaaattcaaaacaaaacttctga |
11975068 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 631
Target Start/End: Complemental strand, 7495167 - 7495122
Alignment:
| Q |
586 |
atcaattaaataatcttctggaaacaatgaacaatatgcaaagcac |
631 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| | ||||||||| |
|
|
| T |
7495167 |
atcaattaaatagtcttttggaaacaatgaacaaaaagcaaagcac |
7495122 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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