View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4597-Insertion-5 (Length: 393)

Name: NF4597-Insertion-5
Description: NF4597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4597-Insertion-5
NF4597-Insertion-5
[»] chr3 (17 HSPs)
chr3 (66-150)||(7604540-7604623)
chr3 (153-229)||(6550345-6550420)
chr3 (154-231)||(6527539-6527615)
chr3 (153-231)||(6849120-6849197)
chr3 (153-210)||(6789468-6789524)
chr3 (231-300)||(8799316-8799385)
chr3 (159-231)||(6558868-6558939)
chr3 (167-231)||(6785698-6785761)
chr3 (232-300)||(38499819-38499887)
chr3 (232-292)||(48346220-48346280)
chr3 (233-300)||(4041416-4041483)
chr3 (232-300)||(38500054-38500122)
chr3 (237-300)||(53197216-53197279)
chr3 (238-300)||(25349943-25350005)
chr3 (239-301)||(43797584-43797646)
chr3 (159-231)||(6797246-6797317)
chr3 (99-131)||(6938353-6938385)
[»] chr2 (10 HSPs)
chr2 (230-301)||(29893029-29893100)
chr2 (231-300)||(22563209-22563278)
chr2 (232-300)||(4371454-4371522)
chr2 (224-300)||(12232555-12232631)
chr2 (232-300)||(34645547-34645615)
chr2 (229-300)||(21265795-21265866)
chr2 (232-269)||(33491448-33491485)
chr2 (232-300)||(21265563-21265631)
chr2 (232-300)||(22563443-22563511)
chr2 (232-300)||(17200078-17200146)
[»] chr4 (10 HSPs)
chr4 (237-299)||(46993072-46993134)
chr4 (230-300)||(54316062-54316132)
chr4 (232-300)||(50544256-50544324)
chr4 (232-300)||(7061972-7062040)
chr4 (235-300)||(23655301-23655366)
chr4 (232-300)||(11789859-11789927)
chr4 (232-300)||(17914981-17915049)
chr4 (230-294)||(24673960-24674024)
chr4 (236-300)||(32591165-32591229)
chr4 (231-291)||(35256141-35256201)
[»] chr8 (11 HSPs)
chr8 (231-300)||(43801704-43801773)
chr8 (226-301)||(16324838-16324913)
chr8 (232-301)||(41403992-41404061)
chr8 (232-300)||(14999171-14999239)
chr8 (232-299)||(41722061-41722128)
chr8 (230-300)||(8489371-8489441)
chr8 (230-300)||(15009091-15009161)
chr8 (232-300)||(6911029-6911097)
chr8 (230-300)||(43801468-43801538)
chr8 (230-262)||(14999446-14999478)
chr8 (233-301)||(41403760-41403828)
[»] chr1 (7 HSPs)
chr1 (232-300)||(24883201-24883269)
chr1 (227-300)||(3385544-3385617)
chr1 (232-294)||(24882971-24883033)
chr1 (239-301)||(49777055-49777117)
chr1 (232-300)||(49776819-49776887)
chr1 (234-300)||(34969987-34970053)
chr1 (240-300)||(33156687-33156747)
[»] scaffold0425 (1 HSPs)
scaffold0425 (153-231)||(12225-12302)
[»] chr7 (11 HSPs)
chr7 (232-301)||(19318147-19318216)
chr7 (227-300)||(19318452-19318525)
chr7 (232-301)||(25048256-25048325)
chr7 (232-300)||(35207178-35207246)
chr7 (232-300)||(35207408-35207476)
chr7 (230-292)||(35363316-35363378)
chr7 (233-298)||(3740644-3740709)
chr7 (231-300)||(19318381-19318450)
chr7 (238-299)||(29474646-29474707)
chr7 (240-301)||(39983869-39983930)
chr7 (233-269)||(2830833-2830869)
[»] chr5 (8 HSPs)
chr5 (231-300)||(31193964-31194033)
chr5 (231-300)||(36955527-36955596)
chr5 (232-300)||(14076902-14076970)
chr5 (232-300)||(31194198-31194266)
chr5 (230-300)||(17370065-17370135)
chr5 (232-301)||(36955303-36955372)
chr5 (231-300)||(9862225-9862294)
chr5 (232-300)||(8754658-8754726)
[»] chr6 (4 HSPs)
chr6 (230-301)||(16125754-16125825)
chr6 (239-301)||(11014553-11014615)
chr6 (239-300)||(24197690-24197751)
chr6 (232-300)||(16125522-16125590)


Alignment Details
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 66 - 150
Target Start/End: Original strand, 7604540 - 7604623
Alignment:
Q  66 aaatgacattgatccataaattcttattatatactacaccttgtttaagaatatctggtaaaaagttatcaactaatcatacctt 150  Q
    |||||| |||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7604540 aaatgaaattgatacataaattcttattat-tactacacctcgtttaagaatatctggtaaaaagttatcaactaatcatacctt 7604623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 6550420 - 6550345
Alignment:
Q  153 tgccactgaggtaattatatgttatcttagctatgtttgaatgtaaaacgtagggaaaggatgatgtgatgcaattt 229  Q
    ||||| |||| |||||||||||||||||| ||||||||||||||||||| ||||||||| || ||||||||||||||    
T  6550420 tgccagtgagataattatatgttatcttaactatgtttgaatgtaaaac-tagggaaagaataatgtgatgcaattt 6550345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 6527615 - 6527539
Alignment:
Q  154 gccactgaggtaattatatgttatcttagctatgtttgaatgtaaaacgtagggaaaggatgatgtgatgcaatttat 231  Q
    |||| |||| ||||||||||| |||||| ||||||||||||||||||| |||||||| |||||  |||||||||||||    
T  6527615 gccagtgagataattatatgtgatcttaactatgtttgaatgtaaaac-tagggaaaagatgacatgatgcaatttat 6527539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 6849197 - 6849120
Alignment:
Q  153 tgccactgaggtaattatatgttatcttagctatgtttgaatgtaaaacgtagggaaaggatgatgtgatgcaatttat 231  Q
    ||||| |||| ||||||||||| |||||| ||||||||||||||||||| || ||||| |||||  |||||||||||||    
T  6849197 tgccagtgagataattatatgtgatcttaactatgtttgaatgtaaaac-tacggaaaagatgacatgatgcaatttat 6849120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 6789524 - 6789468
Alignment:
Q  153 tgccactgaggtaattatatgttatcttagctatgtttgaatgtaaaacgtagggaaa 210  Q
    ||||| |||| ||||||||||||||||||||| |||||||||||||||| ||||||||    
T  6789524 tgccagtgagataattatatgttatcttagctgtgtttgaatgtaaaac-tagggaaa 6789468  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 300
Target Start/End: Original strand, 8799316 - 8799385
Alignment:
Q  231 tgagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    ||||||||||||||||||||||||| || |||| ||||| ||  ||||| |||||||||||||| |||||    
T  8799316 tgagttcgggtatgctccatttaggctaggctccatttactccatttagggtttggatgcaagacatgtg 8799385  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 6558939 - 6558868
Alignment:
Q  159 tgaggtaattatatgttatcttagctatgtttgaatgtaaaacgtagggaaaggatgatgtgatgcaatttat 231  Q
    |||| ||||||||||||||||||  ||||||||||| |||||| |||||||  ||||||||| ||||||||||    
T  6558939 tgagataattatatgttatcttaattatgtttgaatttaaaac-tagggaagagatgatgtgttgcaatttat 6558868  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 6785761 - 6785698
Alignment:
Q  167 ttatatgttatcttagctatgtttgaatgtaaaacgtagggaaaggatgatgtgatgcaatttat 231  Q
    |||||||||||||||  |||||||||| ||||| | ||||||||||||||||||| |||||||||    
T  6785761 ttatatgttatcttaattatgtttgaacgtaaagc-tagggaaaggatgatgtgaagcaatttat 6785698  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 38499819 - 38499887
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    |||||||||||||||||||||||| ||||||| ||||| ||  ||||| |||||||| ||||| |||||    
T  38499819 gagttcgggtatgctccatttaggctaagctccatttactccatttagggtttggatacaagacatgtg 38499887  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 292
Target Start/End: Complemental strand, 48346280 - 48346220
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaa 292  Q
    |||||||||||||||||||||||||| || |||||||| | | |||||| |||||||||||    
T  48346280 gagttcgggtatgctccatttaggttgagttctatttactttatttagaatttggatgcaa 48346220  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 4041483 - 4041416
Alignment:
Q  233 agttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    ||||||||||||||||||||||| ||||||  ||||| ||  ||||| |||||||||||||| |||||    
T  4041483 agttcgggtatgctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgtg 4041416  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 38500122 - 38500054
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    |||||||||||||||||||||||| ||||||| ||||| ||   |||| ||||||||| |||| |||||    
T  38500122 gagttcgggtatgctccatttaggctaagctccatttactccaattagggtttggatgtaagacatgtg 38500054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 300
Target Start/End: Complemental strand, 53197279 - 53197216
Alignment:
Q  237 cgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    ||||||||||||||||||| ||||||  ||||| ||  ||||| |||||||||||||| |||||    
T  53197279 cgggtatgctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgtg 53197216  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 300
Target Start/End: Complemental strand, 25350005 - 25349943
Alignment:
Q  238 gggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    ||||||||||||||||  |||||||| ||||| ||| ||||| ||||||||| |||| |||||    
T  25350005 gggtatgctccatttaaattaagctccatttattctatttagggtttggatgtaagacatgtg 25349943  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 301
Target Start/End: Complemental strand, 43797646 - 43797584
Alignment:
Q  239 ggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtga 301  Q
    ||||||||||||||||| |||| || ||||| ||| ||||| ||||||||| |||| ||||||    
T  43797646 ggtatgctccatttaggctaagatccatttactctatttagggtttggatgaaagacatgtga 43797584  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 6797317 - 6797246
Alignment:
Q  159 tgaggtaattatatgttatcttagctatgtttgaatgtaaaacgtagggaaaggatgatgtgatgcaatttat 231  Q
    |||| ||||||| ||||||||||  |||| |||||| |||||  |||||||| | ||||||||||||||||||    
T  6797317 tgagataattatgtgttatcttaattatgattgaatttaaaaa-tagggaaaagttgatgtgatgcaatttat 6797246  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 6938353 - 6938385
Alignment:
Q  99 ctacaccttgtttaagaatatctggtaaaaagt 131  Q
    ||||||||||||||||||||| |||||||||||    
T  6938353 ctacaccttgtttaagaatatttggtaaaaagt 6938385  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 230 - 301
Target Start/End: Complemental strand, 29893100 - 29893029
Alignment:
Q  230 atgagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtga 301  Q
    |||||||||||||||||||||||||| ||||||||||||| ||| ||||| |||||||||||||| ||||||    
T  29893100 atgagttcgggtatgctccatttaggctaagctctatttactctatttagggtttggatgcaagacatgtga 29893029  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 231 - 300
Target Start/End: Original strand, 22563209 - 22563278
Alignment:
Q  231 tgagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    ||||||||||||||||||||||||| ||||||| ||||| ||  ||||| |||||||||||||| |||||    
T  22563209 tgagttcgggtatgctccatttaggctaagctccatttactccatttagggtttggatgcaagacatgtg 22563278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 4371454 - 4371522
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    |||||||||||||||||||||||| ||||||| ||||| ||  ||||| |||||||||||||| |||||    
T  4371454 gagttcgggtatgctccatttaggctaagctccatttactccatttagggtttggatgcaagacatgtg 4371522  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 300
Target Start/End: Original strand, 12232555 - 12232631
Alignment:
Q  224 caatttatgagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    ||||||||||||| || ||||||||||||||| ||||||| ||||| ||| ||||| ||||||||| |||| |||||    
T  12232555 caatttatgagtttggatatgctccatttaggctaagctccatttactctatttagggtttggatgtaagacatgtg 12232631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 34645547 - 34645615
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    |||||||||||||||| |||||||||||| |||||||| ||  ||||| || ||||||||||| |||||    
T  34645547 gagttcgggtatgctctatttaggttaagttctatttactccatttagggtatggatgcaagacatgtg 34645615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 300
Target Start/End: Complemental strand, 21265866 - 21265795
Alignment:
Q  229 tatgagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    |||||||||| |||||||| ||||| | ||||||| ||||| ||| ||||| |||||||||||||| |||||    
T  21265866 tatgagttcgagtatgctctatttaagctaagctccatttactctatttagggtttggatgcaagacatgtg 21265795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 33491485 - 33491448
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctattta 269  Q
    |||||||||||||||||||||||||||||||| |||||    
T  33491485 gagttcgggtatgctccatttaggttaagctccattta 33491448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 21265563 - 21265631
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    ||||| |||||||||||||||||  ||||||| ||||| ||  ||||| |||||||||||||| |||||    
T  21265563 gagttagggtatgctccatttagactaagctcaatttactccatttagggtttggatgcaagacatgtg 21265631  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 22563511 - 22563443
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    |||||||||||||||||||||||| ||| ||| ||||| ||  |||||  ||||||||||||| |||||    
T  22563511 gagttcgggtatgctccatttaggctaaactccatttactccatttaggatttggatgcaagacatgtg 22563443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 17200078 - 17200146
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    ||||||||||||||||||||||||  |||||| ||||| ||  |||||  |||||||| |||| |||||    
T  17200078 gagttcgggtatgctccatttaggcaaagctccatttactccatttaggatttggatgtaagacatgtg 17200146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 237 - 299
Target Start/End: Original strand, 46993072 - 46993134
Alignment:
Q  237 cgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgt 299  Q
    ||||||||||||||||||||||||||| ||||| ||| ||||| |||||||||||||||||||    
T  46993072 cgggtatgctccatttaggttaagctccatttattctatttagggtttggatgcaagatatgt 46993134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 300
Target Start/End: Complemental strand, 54316132 - 54316062
Alignment:
Q  230 atgagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    |||||| ||||||||||||||||||| ||||||||||||| ||  ||||| |||||||||||||| |||||    
T  54316132 atgagtccgggtatgctccatttaggctaagctctatttactccatttagggtttggatgcaagacatgtg 54316062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 50544256 - 50544324
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    |||||||| ||||||||||||||| ||||||| ||||| ||| ||||| |||||||||||||| |||||    
T  50544256 gagttcggatatgctccatttaggctaagctccatttattctatttagggtttggatgcaagacatgtg 50544324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 7061972 - 7062040
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    |||||||||||||||||||||||| ||| ||||||||| ||  ||||  |||||||||||||| |||||    
T  7061972 gagttcgggtatgctccatttaggctaacctctatttactccatttatggtttggatgcaagacatgtg 7062040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 23655366 - 23655301
Alignment:
Q  235 ttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    ||||||||||||||||||||||||||||  ||||| ||  ||||| |||| ||||||||| |||||    
T  23655366 ttcgggtatgctccatttaggttaagcttcatttattccatttagggtttagatgcaagacatgtg 23655301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 11789859 - 11789927
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    ||||||||||||||||||||||||  |||||  ||||| ||  ||||| |||| |||||||||||||||    
T  11789859 gagttcgggtatgctccatttaggcaaagcttcatttactccatttagggtttagatgcaagatatgtg 11789927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 17915049 - 17914981
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    |||||||| ||||||||||||||| |||| || ||||| ||  |||| ||||||||||||||| |||||    
T  17915049 gagttcggatatgctccatttaggctaagttccatttactccatttaaagtttggatgcaagacatgtg 17914981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 24674024 - 24673960
Alignment:
Q  230 atgagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaaga 294  Q
    |||||||||| ||||||||||||||| ||| ||  ||||| ||| ||||||||||||||| ||||    
T  24674024 atgagttcggatatgctccatttaggctaaacttcatttactctatttagagtttggatgtaaga 24673960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 300
Target Start/End: Original strand, 32591165 - 32591229
Alignment:
Q  236 tcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    |||||||||||| ||||||||||||||| ||||| ||  ||||  ||||| |||||| |||||||    
T  32591165 tcgggtatgctctatttaggttaagctccatttactccatttaaggtttgtatgcaaaatatgtg 32591229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 35256141 - 35256201
Alignment:
Q  231 tgagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgca 291  Q
    ||||||||||||||||| ||||||  ||||||  ||||| ||  |||||||||||||||||    
T  35256141 tgagttcgggtatgctctatttagactaagctgcatttactccatttagagtttggatgca 35256201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 231 - 300
Target Start/End: Complemental strand, 43801773 - 43801704
Alignment:
Q  231 tgagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    |||||||||||||| |||||||||| ||||||| ||||| ||  ||||||||||||||||||||||||||    
T  43801773 tgagttcgggtatgttccatttaggctaagctccatttactccatttagagtttggatgcaagatatgtg 43801704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 16324838 - 16324913
Alignment:
Q  226 atttatgagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtga 301  Q
    |||| |||||||||| |||||||||||||| ||||||| ||||||||  ||||| |||||||||||||| ||||||    
T  16324838 atttgtgagttcgggcatgctccatttaggctaagctcaatttaatccatttagggtttggatgcaagacatgtga 16324913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 41404061 - 41403992
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtga 301  Q
    ||||| ||||||||||||||||||||||| || ||||| ||| ||||| |||||||||||||| ||||||    
T  41404061 gagtttgggtatgctccatttaggttaagttcaatttactctatttagggtttggatgcaagacatgtga 41403992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 14999171 - 14999239
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    |||||||| ||||||||||||||| ||||||| ||||| ||  ||||| |||||||||||||| |||||    
T  14999171 gagttcggatatgctccatttaggctaagctcaatttactccatttagggtttggatgcaagacatgtg 14999239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 299
Target Start/End: Complemental strand, 41722128 - 41722061
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgt 299  Q
    ||||||||||||| | |||||||| ||||||||||||| | | ||||||| |||||||||||| ||||    
T  41722128 gagttcgggtatgtttcatttaggctaagctctatttactttatttagagcttggatgcaagacatgt 41722061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 300
Target Start/End: Original strand, 8489371 - 8489441
Alignment:
Q  230 atgagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    ||||||| |||||||||||||||||||||||||  ||||| ||  ||||| ||||||||| |||| |||||    
T  8489371 atgagtttgggtatgctccatttaggttaagcttcatttattccatttagggtttggatgtaagacatgtg 8489441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 300
Target Start/End: Complemental strand, 15009161 - 15009091
Alignment:
Q  230 atgagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    |||||||||||||||||||||||||| ||||||  ||||| ||  ||||| ||||||||| |||| |||||    
T  15009161 atgagttcgggtatgctccatttaggctaagcttcatttactccatttagggtttggatgtaagacatgtg 15009091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 6911029 - 6911097
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    |||||| ||||||||||||||||| ||||||| ||||| ||  ||||| ||||||||| |||| |||||    
T  6911029 gagttcaggtatgctccatttaggctaagctccatttactccatttagggtttggatgtaagacatgtg 6911097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 300
Target Start/End: Original strand, 43801468 - 43801538
Alignment:
Q  230 atgagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    ||||||||||||||||| |||||||| ||| ||  ||||| ||  ||||||||||||||| |||| |||||    
T  43801468 atgagttcgggtatgcttcatttaggctaaacttcatttactccatttagagtttggatgtaagacatgtg 43801538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 262
Target Start/End: Complemental strand, 14999478 - 14999446
Alignment:
Q  230 atgagttcgggtatgctccatttaggttaagct 262  Q
    |||||||||| ||||||||||||||||||||||    
T  14999478 atgagttcggatatgctccatttaggttaagct 14999446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 41403760 - 41403828
Alignment:
Q  233 agttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtga 301  Q
    |||||||||||||| ||||||| |||||||| ||||| ||  |||||  ||| |||| |||||||||||    
T  41403760 agttcgggtatgcttcatttagattaagctcaatttactccatttaggattttgatgtaagatatgtga 41403828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 24883269 - 24883201
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    ||||||||||||| |||||||||| ||||||| ||||| ||  ||||| ||||||||||||||||||||    
T  24883269 gagttcgggtatgttccatttaggctaagctccatttactccatttagggtttggatgcaagatatgtg 24883201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 3385617 - 3385544
Alignment:
Q  227 tttatgagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    |||| ||||||||||||||||||||||||  |||||| ||||| ||  ||||| ||||||||| ||||||||||    
T  3385617 tttaagagttcgggtatgctccatttaggccaagctccatttactccatttagggtttggatgtaagatatgtg 3385544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 294
Target Start/End: Original strand, 24882971 - 24883033
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaaga 294  Q
    |||||||||||||||||||||||| ||| ||| ||||| ||  ||||| ||||||||||||||    
T  24882971 gagttcgggtatgctccatttaggctaatctccatttactccatttagggtttggatgcaaga 24883033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 301
Target Start/End: Complemental strand, 49777117 - 49777055
Alignment:
Q  239 ggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtga 301  Q
    ||||||||||||||||| ||| ||| ||||| ||| ||||| |||||||||||||| ||||||    
T  49777117 ggtatgctccatttaggctaaactccatttattctatttagggtttggatgcaagacatgtga 49777055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 49776819 - 49776887
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    |||||||||||||||||||||| | |||||| |||||| ||  |||||  ||||||||||||| |||||    
T  49776819 gagttcgggtatgctccatttaagctaagctttatttactccatttaggatttggatgcaagacatgtg 49776887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 300
Target Start/End: Original strand, 34969987 - 34970053
Alignment:
Q  234 gttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    ||||||||||||| |||||||||||| ||| ||||| ||  |||||  ||||||||||||| |||||    
T  34969987 gttcgggtatgcttcatttaggttaaactccatttactcaatttaggatttggatgcaagacatgtg 34970053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 300
Target Start/End: Complemental strand, 33156747 - 33156687
Alignment:
Q  240 gtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    |||||||||||||||| |||||| |||||| ||  ||||| |||||||| ||||| |||||    
T  33156747 gtatgctccatttaggctaagctttatttactccatttagggtttggatacaagacatgtg 33156687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 12302 - 12225
Alignment:
Q  153 tgccactgaggtaattatatgttatcttagctatgtttgaatgtaaaacgtagggaaaggatgatgtgatgcaatttat 231  Q
    ||||| |||| ||||||||||| |||||| ||||||||||||||||||| || ||||| |||||  |||||||||||||    
T  12302 tgccagtgagataattatatgtgatcttaactatgtttgaatgtaaaac-tacggaaaagatgacatgatgcaatttat 12225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 301
Target Start/End: Original strand, 19318147 - 19318216
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtga 301  Q
    ||||| |||||||||||||||||||||||| | ||||| ||  ||||||||||||||| |||| ||||||    
T  19318147 gagtttgggtatgctccatttaggttaagcgccatttactccatttagagtttggatgtaagacatgtga 19318216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 19318525 - 19318452
Alignment:
Q  227 tttatgagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    ||||||||||||||||||||||||||||| ||||||| ||||| ||  ||||  |||| ||||||||| |||||    
T  19318525 tttatgagttcgggtatgctccatttaggctaagctccatttactccatttaaggtttagatgcaagacatgtg 19318452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 25048325 - 25048256
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtga 301  Q
    |||||||||||||||||||||||| ||||||| ||||| |   |||||  ||||||||||||| ||||||    
T  25048325 gagttcgggtatgctccatttaggctaagctccatttacttcatttaggatttggatgcaagacatgtga 25048256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 35207178 - 35207246
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    ||||||||||||  |||||||||| ||||||| ||||| ||  ||||| |||||||||||||| |||||    
T  35207178 gagttcgggtatattccatttaggctaagctccatttactccatttagggtttggatgcaagacatgtg 35207246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 35207476 - 35207408
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    |||||||| ||||||||||||||| ||| ||| ||||| ||  ||||| |||||||||||||| |||||    
T  35207476 gagttcggatatgctccatttaggctaaactccatttactccatttagggtttggatgcaagacatgtg 35207408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 35363316 - 35363378
Alignment:
Q  230 atgagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaa 292  Q
    |||||||||||||||||||||||||| |||| |  ||||| ||  |||||||||| |||||||    
T  35363316 atgagttcgggtatgctccatttaggctaagtttcatttactccatttagagtttagatgcaa 35363378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 298
Target Start/End: Original strand, 3740644 - 3740709
Alignment:
Q  233 agttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatg 298  Q
    ||||||||||||||| ||||||||||| || |||||| ||  ||||  ||||||||| ||||||||    
T  3740644 agttcgggtatgctcaatttaggttaaactttatttattccatttaaggtttggatgtaagatatg 3740709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 300
Target Start/End: Complemental strand, 19318450 - 19318381
Alignment:
Q  231 tgagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    ||||||||||||||||||||||||| ||||||  ||||| ||  ||||  |||| ||||||||| |||||    
T  19318450 tgagttcgggtatgctccatttaggctaagcttcatttactccatttaaggtttagatgcaagacatgtg 19318381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 29474707 - 29474646
Alignment:
Q  238 gggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgt 299  Q
    |||| ||||||||||||| ||| ||| ||||| ||| ||||||| |||||||||||| ||||    
T  29474707 gggtgtgctccatttaggctaaactccatttactctatttagagcttggatgcaagacatgt 29474646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 301
Target Start/End: Complemental strand, 39983930 - 39983869
Alignment:
Q  240 gtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtga 301  Q
    ||||||||||||||||  |||||| ||||| ||  ||||| |||||||||||||| ||||||    
T  39983930 gtatgctccatttaggcgaagctccatttactccatttagggtttggatgcaagacatgtga 39983869  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 2830833 - 2830869
Alignment:
Q  233 agttcgggtatgctccatttaggttaagctctattta 269  Q
    |||||||||||||| |||||||||||||||| |||||    
T  2830833 agttcgggtatgcttcatttaggttaagctccattta 2830869  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 300
Target Start/End: Original strand, 31193964 - 31194033
Alignment:
Q  231 tgagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    ||||||||||||||||||||||||| ||||||| ||||| ||  ||||  |||||||||||||| |||||    
T  31193964 tgagttcgggtatgctccatttaggctaagctccatttactccatttaaggtttggatgcaagacatgtg 31194033  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 300
Target Start/End: Complemental strand, 36955596 - 36955527
Alignment:
Q  231 tgagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    |||||| ||||| |||||||||||| ||||||||||||| ||| ||||| |||||| ||||||| |||||    
T  36955596 tgagtttgggtacgctccatttaggctaagctctatttactctatttagggtttggttgcaagacatgtg 36955527  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 14076970 - 14076902
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    |||||||| ||||||||||||||| |||| |||||||| ||  ||||| |||||||||||||| |||||    
T  14076970 gagttcggatatgctccatttaggctaagttctatttactccatttagggtttggatgcaagacatgtg 14076902  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 31194266 - 31194198
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    |||||||||||||||||||||||| ||||||| ||||| ||  ||||  |||||||||||||| |||||    
T  31194266 gagttcgggtatgctccatttaggctaagctccatttactccatttaaggtttggatgcaagacatgtg 31194198  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 300
Target Start/End: Original strand, 17370065 - 17370135
Alignment:
Q  230 atgagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    |||||||||||||||||||||||| | ||| ||| ||||| ||  ||||| |||||||||||||| |||||    
T  17370065 atgagttcgggtatgctccatttatgctaaactccatttactccatttagggtttggatgcaagacatgtg 17370135  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 301
Target Start/End: Original strand, 36955303 - 36955372
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtga 301  Q
    ||||||||||| |||||||||||| ||||||  ||||| ||  ||||| |||||||||||||| ||||||    
T  36955303 gagttcgggtaggctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgtga 36955372  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 300
Target Start/End: Complemental strand, 9862294 - 9862225
Alignment:
Q  231 tgagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    |||||| |||||||||||||||||| |||| |   |||| ||  ||||| ||||||||||||||||||||    
T  9862294 tgagtttgggtatgctccatttagggtaagtttcgtttactccatttagggtttggatgcaagatatgtg 9862225  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 8754658 - 8754726
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    |||||||||||| ||||||||||  ||| ||| ||||| ||| ||||| ||||||||| |||| |||||    
T  8754658 gagttcgggtatcctccatttagactaaactccatttactctatttagggtttggatggaagacatgtg 8754726  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 301
Target Start/End: Complemental strand, 16125825 - 16125754
Alignment:
Q  230 atgagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtga 301  Q
    |||||||||| ||||||| ||||||  ||||||| ||||| ||  ||||||| |||||||||||||||||||    
T  16125825 atgagttcggatatgctctatttagactaagctccatttactcaatttagagcttggatgcaagatatgtga 16125754  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 301
Target Start/End: Complemental strand, 11014615 - 11014553
Alignment:
Q  239 ggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtga 301  Q
    ||||||||||||||||| ||| ||| ||||| ||| ||||  ||||| |||||||||||||||    
T  11014615 ggtatgctccatttaggctaaactccatttattctatttaatgtttgaatgcaagatatgtga 11014553  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 300
Target Start/End: Original strand, 24197690 - 24197751
Alignment:
Q  239 ggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    |||||||||||||||  | |||||| ||||| ||| |||||| ||||||||||||| |||||    
T  24197690 ggtatgctccatttacctaaagctcaatttagtctatttagactttggatgcaagacatgtg 24197751  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 16125522 - 16125590
Alignment:
Q  232 gagttcgggtatgctccatttaggttaagctctatttaatctgtttagagtttggatgcaagatatgtg 300  Q
    |||||||||||||||||||||||| ||| ||  ||||| |   ||||| |||||||||||||| |||||    
T  16125522 gagttcgggtatgctccatttaggctaaacttcatttatttcatttagggtttggatgcaagacatgtg 16125590  T

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