View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4597-Insertion-7 (Length: 363)

Name: NF4597-Insertion-7
Description: NF4597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4597-Insertion-7
NF4597-Insertion-7
[»] chr1 (1 HSPs)
chr1 (8-363)||(2066240-2066598)


Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 8 - 363
Target Start/End: Original strand, 2066240 - 2066598
Alignment:
Q  8 tgatgaacgttttttcaacatatatttaactattgtagatgtgtccaatgagtgataaaggtatgtgagagcaacaaaaatattttagggc---acttgt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||   ||||||    
T  2066240 tgatgaacgttttttcaacatatatttaactattgtagatgtgtccaatgagtgataaaggtatgtgagagcaacaaaaatgttttagggcggcacttgt 2066339  T
Q  105 atgagttttctaacacatgtagtacgggtatcatacggatttcagaaacggatccaacaaatttcgaagataatagaaaaatatttttatgagacagttg 204  Q
    ||||||||||||||||||||  |||| |||||||| |||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2066340 atgagttttctaacacatgtcatacgagtatcatatggatttcagatagcgatccaacaaatttcgaagataatagaaaaatatttttatgagacagttg 2066439  T
Q  205 tctgaattttcaacatgtgtcgtacatatgtcatttgagtgtcagacattgatgtgtgtcggacatagcaacacgcctaataactgtgcttggtagtctc 304  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  2066440 tctgaattttcaacatgtgtcgtacacatgtcatttgagtgtcagacattgatgtgtgtcagacatagcaacacgcctaataactgtgcttggtagtctg 2066539  T
Q  305 aaaggctcaaaagatccaattttcacaggcaaacatcctcaaataattctgatatgcag 363  Q
    ||||||||||||||||||||||||| || |||||||||||||| |||||| ||||||||    
T  2066540 aaaggctcaaaagatccaattttcatagacaaacatcctcaaaaaattctcatatgcag 2066598  T

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