View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4597-Insertion-8 (Length: 338)

Name: NF4597-Insertion-8
Description: NF4597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4597-Insertion-8
NF4597-Insertion-8
[»] chr2 (5 HSPs)
chr2 (8-119)||(41508526-41508637)
chr2 (231-338)||(41508739-41508846)
chr2 (19-60)||(33498629-33498670)
chr2 (25-67)||(11781573-11781615)
chr2 (18-71)||(30303827-30303881)
[»] chr3 (6 HSPs)
chr3 (25-65)||(51497997-51498037)
chr3 (25-65)||(26643290-26643330)
chr3 (27-60)||(8178370-8178403)
chr3 (26-66)||(35990536-35990576)
chr3 (28-60)||(42088735-42088767)
chr3 (26-66)||(53791963-53792003)
[»] scaffold0205 (1 HSPs)
scaffold0205 (13-71)||(21411-21469)
[»] chr7 (2 HSPs)
chr7 (26-60)||(9483392-9483426)
chr7 (26-66)||(37445111-37445151)
[»] chr6 (5 HSPs)
chr6 (16-66)||(23918361-23918411)
chr6 (27-59)||(32694776-32694808)
chr6 (13-66)||(4356896-4356949)
chr6 (30-66)||(6916744-6916780)
chr6 (32-60)||(32908377-32908405)
[»] chr4 (1 HSPs)
chr4 (29-71)||(24875735-24875777)
[»] chr1 (3 HSPs)
chr1 (25-62)||(44247635-44247672)
chr1 (26-64)||(7252407-7252445)
chr1 (16-56)||(21358209-21358249)
[»] chr8 (2 HSPs)
chr8 (26-66)||(10170397-10170437)
chr8 (19-59)||(3066043-3066083)
[»] chr5 (1 HSPs)
chr5 (26-66)||(2611091-2611131)


Alignment Details
Target: chr2 (Bit Score: 104; Significance: 8e-52; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 8 - 119
Target Start/End: Original strand, 41508526 - 41508637
Alignment:
Q  8 taacaacatcaacacatgtaataatttgagaaaatagaataattgaatgtaactacatgcatcatcataaccaaccaagcatacatgacttgattaatgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41508526 taacaacatcaacacatgtaataatttgagaaaatagaataattgaatgtaactacatgcatcatcataaccaaccaagcatagatgacttgattaatgt 41508625  T
Q  108 cacattgtaatt 119  Q
     |||||||||||    
T  41508626 aacattgtaatt 41508637  T

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Target: chr2; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 231 - 338
Target Start/End: Original strand, 41508739 - 41508846
Alignment:
Q  231 gggttttctttaagtggttgaaatgagaatcttccaagaaaaggagcaacacaagtgccatgaaatgcattctcaggacaatcattaacatacattgtaa 330  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41508739 gggttttctttaagtggttgaaatgagaaccttccaagaaaaggagcaacacaagtgccatgaaatgcattctcaggacaatcattaacatacattgtaa 41508838  T
Q  331 aaatgaaa 338  Q
    ||||||||    
T  41508839 aaatgaaa 41508846  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 33498629 - 33498670
Alignment:
Q  19 acacatgtaataatttgagaaaatagaataattgaatgtaac 60  Q
    ||||| |||||||||||||||||| |||||||||||||||||    
T  33498629 acacaagtaataatttgagaaaatggaataattgaatgtaac 33498670  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 11781615 - 11781573
Alignment:
Q  25 gtaataatttgagaaaatagaataattgaatgtaactacatgc 67  Q
    ||||||||||||||||||  |||| ||||||||||||||||||    
T  11781615 gtaataatttgagaaaatgaaatatttgaatgtaactacatgc 11781573  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 30303881 - 30303827
Alignment:
Q  18 aacacatgtaataatttgagaaaatag-aataattgaatgtaactacatgcatca 71  Q
    ||||| ||||||||||||||||||| | ||| |||||||||| ||||||||||||    
T  30303881 aacacctgtaataatttgagaaaatggaaatgattgaatgtagctacatgcatca 30303827  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 51497997 - 51498037
Alignment:
Q  25 gtaataatttgagaaaatagaataattgaatgtaactacat 65  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  51497997 gtaataatttgataaaatagaataattgaatgtaactacat 51498037  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 26643330 - 26643290
Alignment:
Q  25 gtaataatttgagaaaatagaataattgaatgtaactacat 65  Q
    |||||||||| ||||||||||||||||||||||||| ||||    
T  26643330 gtaataatttaagaaaatagaataattgaatgtaaccacat 26643290  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 8178370 - 8178403
Alignment:
Q  27 aataatttgagaaaatagaataattgaatgtaac 60  Q
    ||||||||||||||||||||||||||| ||||||    
T  8178370 aataatttgagaaaatagaataattgattgtaac 8178403  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 35990576 - 35990536
Alignment:
Q  26 taataatttgagaaaatagaataattgaatgtaactacatg 66  Q
    |||||||||||||||||| ||||| |||||||||| |||||    
T  35990576 taataatttgagaaaataaaataactgaatgtaaccacatg 35990536  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 42088735 - 42088767
Alignment:
Q  28 ataatttgagaaaatagaataattgaatgtaac 60  Q
    |||||||||||||||| ||||||||||||||||    
T  42088735 ataatttgagaaaataaaataattgaatgtaac 42088767  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 53792003 - 53791963
Alignment:
Q  26 taataatttgagaaaatagaataattgaatgtaactacatg 66  Q
    ||||||||||||||||  ||||||||||||||||| |||||    
T  53792003 taataatttgagaaaaaggaataattgaatgtaaccacatg 53791963  T

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Target: scaffold0205 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 21411 - 21469
Alignment:
Q  13 acatcaacacatgtaataatttgagaaaatagaataattgaatgtaactacatgcatca 71  Q
    |||| |||| |||||||| |||||||||||| |||||||||||||||| ||||| ||||    
T  21411 acattaacatatgtaatagtttgagaaaataaaataattgaatgtaaccacatgtatca 21469  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 9483392 - 9483426
Alignment:
Q  26 taataatttgagaaaatagaataattgaatgtaac 60  Q
    |||||||||||||||||||||||||||||||||||    
T  9483392 taataatttgagaaaatagaataattgaatgtaac 9483426  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 37445111 - 37445151
Alignment:
Q  26 taataatttgagaaaatagaataattgaatgtaactacatg 66  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  37445111 taataatttgacaaaatagaataattgaatgtaaatacatg 37445151  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 23918411 - 23918361
Alignment:
Q  16 tcaacacatgtaataatttgagaaaatagaataattgaatgtaactacatg 66  Q
    ||||||| |||||||||||||||| |||||||||||||||| || ||||||    
T  23918411 tcaacacttgtaataatttgagaagatagaataattgaatgcaattacatg 23918361  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 32694808 - 32694776
Alignment:
Q  27 aataatttgagaaaatagaataattgaatgtaa 59  Q
    |||||||||||||||||||||||||||||||||    
T  32694808 aataatttgagaaaatagaataattgaatgtaa 32694776  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 4356949 - 4356896
Alignment:
Q  13 acatcaacacatgtaataatttgagaaaatagaataattgaatgtaactacatg 66  Q
    ||||||||||  |||| |||||||||||||| |||||||||||| |||| ||||    
T  4356949 acatcaacacgagtaacaatttgagaaaataaaataattgaatgcaactgcatg 4356896  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 6916744 - 6916780
Alignment:
Q  30 aatttgagaaaatagaataattgaatgtaactacatg 66  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  6916744 aatttgagaaaattgaataattgaatgtaaccacatg 6916780  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Original strand, 32908377 - 32908405
Alignment:
Q  32 tttgagaaaatagaataattgaatgtaac 60  Q
    |||||||||||||||||||||||||||||    
T  32908377 tttgagaaaatagaataattgaatgtaac 32908405  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 24875735 - 24875777
Alignment:
Q  29 taatttgagaaaatagaataattgaatgtaactacatgcatca 71  Q
    |||||||||||||||||||||||||||||||| ||||| ||||    
T  24875735 taatttgagaaaatagaataattgaatgtaaccacatgtatca 24875777  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 44247672 - 44247635
Alignment:
Q  25 gtaataatttgagaaaatagaataattgaatgtaacta 62  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  44247672 gtaataatttgagaaaatagaataattgaatgttacta 44247635  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 7252445 - 7252407
Alignment:
Q  26 taataatttgagaaaatagaataattgaatgtaactaca 64  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  7252445 taataatttgaggaaatagaatgattgaatgtaactaca 7252407  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 21358249 - 21358209
Alignment:
Q  16 tcaacacatgtaataatttgagaaaatagaataattgaatg 56  Q
    |||||||| |||||||||||||||||| | |||||||||||    
T  21358249 tcaacacaagtaataatttgagaaaattgtataattgaatg 21358209  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 10170437 - 10170397
Alignment:
Q  26 taataatttgagaaaatagaataattgaatgtaactacatg 66  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  10170437 taataatttgagaaaataaattaattgaatgtaactacatg 10170397  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 3066043 - 3066083
Alignment:
Q  19 acacatgtaataatttgagaaaatagaataattgaatgtaa 59  Q
    ||||| |||||||||||||||||| || |||||||||||||    
T  3066043 acacaggtaataatttgagaaaatggattaattgaatgtaa 3066083  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 2611131 - 2611091
Alignment:
Q  26 taataatttgagaaaatagaataattgaatgtaactacatg 66  Q
    |||||||||||||||||| ||| |||||||||||| |||||    
T  2611131 taataatttgagaaaataaaattattgaatgtaaccacatg 2611091  T

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