View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4597_high_15 (Length: 239)
Name: NF4597_high_15
Description: NF4597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4597_high_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 10386784 - 10386573
Alignment:
| Q |
10 |
tcaaaatcaaattttggacataaatatataatttgtctatttctgctttaataaaatctcattgattttagctttaatgtaaaagactattttttctctc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10386784 |
tcaaaatcaaattttggacataaatatataatttgtctatttctgctttaataaaatctcattgattttagctttaatgtaaaagactatttttt-tctc |
10386686 |
T |
|
| Q |
110 |
aacacattgagctctttttcaaaatcaaattattctttgcaatgagaagaatgagacttttgggattgggaaacggtgtctatgtttttcctctcacagc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10386685 |
aacacattgagctctttttcaaaatcaaattattgtttgcaatgagaataatgagacttttgggattgggaaatggtgtctatgtttttcctctcacagc |
10386586 |
T |
|
| Q |
210 |
tttcttgatcatg |
222 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10386585 |
tttcttgatcatg |
10386573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 10382853 - 10382773
Alignment:
| Q |
138 |
attattctttgcaatgagaagaatgagacttttgggattgggaaacggtgtctatgtttttcctctcacagctttcttgat |
218 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||| ||||| ||| |||||| |||||||||||||||||||||| |
|
|
| T |
10382853 |
attattatttgcaatgagaagaatgagacctttgggattgagaaactttgtatatgttcttcctctcacagctttcttgat |
10382773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 10383006 - 10382935
Alignment:
| Q |
26 |
gacataaatatataatttgtctatttctgctttaataaaatctcattgattttagctttaatgtaaaagact |
97 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| |||| || ||||||| ||||||||||||||| |||| |
|
|
| T |
10383006 |
gacataaatatataatttgtctttttctatttttataagattggattgattctagctttaatgtaaatgact |
10382935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University