View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4597_high_4 (Length: 400)
Name: NF4597_high_4
Description: NF4597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4597_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 17 - 389
Target Start/End: Original strand, 25943655 - 25944039
Alignment:
| Q |
17 |
atgaagaaggatggcttggccttgaaggacaattcataaaaaatgnnnnnnnnnngatgtattcattgttcatgtgccgtgcgacatatcatccttagct |
116 |
Q |
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| T |
25943655 |
atgaaggaggatggcttgtccttgaaggacaatccataaaaaatgttttttttttgatgtattcattgttcatgtgccgtgcgacatatcatccttagct |
25943754 |
T |
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| Q |
117 |
gctattgt------------tcggtatcactttcccactttccaccattcatagctacttccattcacaatacaatgattctatgacctcaaaaattcta |
204 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25943755 |
gctattgtttgttgtgttgttcggtatcactttcccactttccaccattcatagctacttccattcacaatacaatgattctatgacctcaaaaattcta |
25943854 |
T |
|
| Q |
205 |
agccaaaccaatgaatactttctctccttcctccacaattttacctttcccttcactttccaaaaactccattttctttgtcccttttaaaggtaaaacc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25943855 |
agccaaaccaatgaatactttctctccttcctccacaattttacctttcccttcactttccaaaaactccattttctttgtcccttttaaaggtaaaacc |
25943954 |
T |
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| Q |
305 |
aaccaattttctttttccaagtcaaggataattgcttgctcttctccacaggatgcaagctccaatgaaatcacaccaaagttag |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25943955 |
aaccaattttctttttccaagtcaaggataattgcttgctcttctccacaggatgcaagctccaatgaaatcacaccaaagttag |
25944039 |
T |
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