View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4597_high_6 (Length: 353)
Name: NF4597_high_6
Description: NF4597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4597_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 20 - 336
Target Start/End: Complemental strand, 29273948 - 29273627
Alignment:
| Q |
20 |
ggtataagaagggtcggtgtttggcatggtggtggagtttgaatgagaaggtaggtaaggtggctgataggtttggatggaggagaaaaacaaatttgtt |
119 |
Q |
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| T |
29273948 |
ggtataagaagggtcagtgtttggcatggtggtggagtttgaatgagaaggtaggtaaggtggctgataggtttagatggaggagagaaaaaaaattgtt |
29273849 |
T |
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| Q |
120 |
gcctaagcttaccgataccatgacatcatgttaaatatgctttgaatctcctcacaaaagttagctcaaatgacaaggacgcccaagcacatttatacat |
219 |
Q |
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| T |
29273848 |
acctaagcttaccgataccatgacatcatattaaatatgctttgaatatcctcacaaaagttagctcaaatgacaaggacgtccaagcacatttatacat |
29273749 |
T |
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| Q |
220 |
caaattgcccgaaaatctgaaaa----gtgtgagactcccagaaaactttaaacaacttgaatactcatcaatgggtcgtgagtcaaattcctataatac |
315 |
Q |
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| T |
29273748 |
caaattgctcgaaaatttgaaaaatgcatgtgagactcccaacaaactttaaacaacttaaatactcatcaatgggtcgtgagtcaaattcctataatac |
29273649 |
T |
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| Q |
316 |
aattcttaa-cccgactatgat |
336 |
Q |
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|||||||| |||||||||||| |
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| T |
29273648 |
gattcttaaccccgactatgat |
29273627 |
T |
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