View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4597_low_11 (Length: 262)
Name: NF4597_low_11
Description: NF4597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4597_low_11 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 48279885 - 48279657
Alignment:
| Q |
16 |
atgaagaatgaccctataaaatatttacttctccatgtgattccaatatcttgacctcatcaagaatggtgtatctactgccatggacataatagtcaaa |
115 |
Q |
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|||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| || || |||||||||||| |||| |
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| T |
48279885 |
atgaaggatgacccaataaaatatttactgctccatgtgattccaatatcttgacctcatcaagaatggtgtgtctgctaccctggacataatagccaaa |
48279786 |
T |
|
| Q |
116 |
taagaatagatnnnnnnntgtaacctgaacaaaaagacttacatcttattgagagaagagcagtatttaccttttctgaagagaagaaagaacatgaaag |
215 |
Q |
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||||||||||| | ||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
48279785 |
taagaatagataaaaaaatataacccgaacaaaaagacctacatcttattgagagaagagcagtatctaccttttctgaagagaagaaagaacatgaaag |
48279686 |
T |
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| Q |
216 |
ttttcttagtaaccgcatctgccataccg |
244 |
Q |
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||||||||||||||||||||||| ||||| |
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| T |
48279685 |
ttttcttagtaaccgcatctgccgtaccg |
48279657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 40389729 - 40389501
Alignment:
| Q |
16 |
atgaagaatgaccctataaaatatttacttctccatgtgattccaatatcttgacctcatcaagaatggtgtatctactgccatggacataatagtcaaa |
115 |
Q |
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|||||| ||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||| || | |
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| T |
40389729 |
atgaaggatgacccaataaaatatttattgctccatgtgattccaatatcttgacctcatcaagaatggtgtgtctgctaccatggacataatagccata |
40389630 |
T |
|
| Q |
116 |
taagaatagatnnnnnnntgtaacctgaacaaaaagacttacatcttattgagagaagagcagtatttaccttttctgaagagaagaaagaacatgaaag |
215 |
Q |
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| T |
40389629 |
taagaatagataaaaaaatgtaacccggacaaaaagacttatatcttattgagagaagagcagtatctaccttttctgaagagaagaaagaacatgaaag |
40389530 |
T |
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| Q |
216 |
ttttcttagtaaccgcatctgccataccg |
244 |
Q |
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| T |
40389529 |
ttttcttagtaaccgcatctaccgtaccg |
40389501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 41 - 244
Target Start/End: Complemental strand, 29633773 - 29633571
Alignment:
| Q |
41 |
tacttctccatgtgattccaatatcttgacctcatcaagaatggtgtatctactgccatggacataatagtcaaataagaatagatnnnnnnntgtaacc |
140 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| || ||| || |||| ||| |||||| ||||||||||||||| ||||||| |
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| T |
29633773 |
tactgctccatgtgattccaatatcttgacctcatcaagaatgg-gtgtctgctaccatagacgtaatagccaaataagaatagataaaaaaatgtaacc |
29633675 |
T |
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| Q |
141 |
tgaacaaaaagacttacatcttattgagagaagagcagtatttaccttttctgaagagaagaaagaacatgaaagttttcttagtaaccgcatctgccat |
240 |
Q |
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| T |
29633674 |
cgaacaaaaagacttacatcttattgagagaagaacaatatctgccttttctgaagagaagaaagaacatgaaagttttcttagtaaccgcatatgccgt |
29633575 |
T |
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| Q |
241 |
accg |
244 |
Q |
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|||| |
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| T |
29633574 |
accg |
29633571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 83489 - 83270
Alignment:
| Q |
16 |
atgaagaatgaccctataaaatatttacttctccatgtgattccaatatcttgacctcatcaagaatggtgtatctactgccatggacataatagtcaaa |
115 |
Q |
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|||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||| || ||||||||||||||| |||| |
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| T |
83489 |
atgaaggatgaccgaataaaatatttactgctccatgtgattccaatatcttgacctcatcatgaatggtgtgtctgctaccatggacataatagccaaa |
83390 |
T |
|
| Q |
116 |
taagaatagatnnnnnnntgtaacctgaacaaaaagacttacatcttattgagagaagagcagtatttaccttttctgaagagaagaaagaacatgaaag |
215 |
Q |
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|||||||||| ||||||| ||||||||| ||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||| |||| |
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| T |
83389 |
taagaatagagaaaaaaatgtaacccgaacaaaaatacttacatcttattgagagaagaacaatatctaccttttctgaagagaagaaagaacataaaag |
83290 |
T |
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| Q |
216 |
ttttcttagtaaccgcatct |
235 |
Q |
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|||||||||||||||||||| |
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| T |
83289 |
ttttcttagtaaccgcatct |
83270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 24564794 - 24564854
Alignment:
| Q |
164 |
ttgagagaagagcagtatttaccttttctgaa---gagaagaaagaacatgaaagttttct |
221 |
Q |
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| T |
24564794 |
ttgagagaagagcactatatacctttcctgaaatggagaagaaagaacatgaaagttttct |
24564854 |
T |
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