View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4597_low_13 (Length: 250)
Name: NF4597_low_13
Description: NF4597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4597_low_13 |
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| [»] scaffold0046 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 28469306 - 28469544
Alignment:
| Q |
1 |
atgttaattggcaattaatagggtagttgcaatttacgtcagatttatggtcttccatatttagatgaaagattttgctgtcacatatgcatcattgttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
28469306 |
atgttaattggcaattaatagggtagttgcaatttacgtcagatttatggtcttccatatctagatgaaagattttgctgtcacatgtgcatcattgttt |
28469405 |
T |
|
| Q |
101 |
tgtgataattttcaagagttcctgaagaaatccatggttagagtgtgtagagggagaaagcttatgcaaaccgtccaaaaagtaacattttggtcatatt |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28469406 |
tgtgataattttcaagagttcttgaagaaatccatggttagagtgtgtagagggacaaagcttatgcaaaccgtccaaaaagtaacattttggtcatatt |
28469505 |
T |
|
| Q |
201 |
accccaatttcaatagacatctctcgtgattggaccttt |
239 |
Q |
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| T |
28469506 |
accccaatttcaaaagacatctctcgtgattggaccttt |
28469544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 34734428 - 34734190
Alignment:
| Q |
1 |
atgttaattggcaattaatagggtagttgcaatttacgtcagatttatggtcttccatatttagatgaaagattttgctgtcacatatgcatcattgttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
34734428 |
atgttaattggcaattaatagggtagttgcaatttacgtcagatttatggtcttccatatctagatgaaagattttgctgtcacatgtgcatcattgttt |
34734329 |
T |
|
| Q |
101 |
tgtgataattttcaagagttcctgaagaaatccatggttagagtgtgtagagggagaaagcttatgcaaaccgtccaaaaagtaacattttggtcatatt |
200 |
Q |
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| T |
34734328 |
tgtgataattttcaagagttcttgaagaaatccatggttagagtgtgtagagggacaaagcttatgcaaaccgtccaaaaagtaacattttggtcatatt |
34734229 |
T |
|
| Q |
201 |
accccaatttcaatagacatctctcgtgattggaccttt |
239 |
Q |
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||||||||||||| ||||||||||||||||||||||||| |
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| T |
34734228 |
accccaatttcaaaagacatctctcgtgattggaccttt |
34734190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 75733 - 75496
Alignment:
| Q |
1 |
atgttaattggcaattaatagggtagttgcaatttacgtcagatttatggtcttccatatttagatgaaagattttgctgtcacatatgcatcattgttt |
100 |
Q |
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|||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
75733 |
atgttagttgggaattaatagggtagttgcaatttacgttagatttatggtcttccatatctagatgaaagattttgctgtcacatgtgcatcattgttt |
75634 |
T |
|
| Q |
101 |
tgtgataattttcaagagttcctgaagaaatccatggttagagtgtgtagagggagaaagcttatgcaaaccgtccaaaaagtaacattttggtcatatt |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
75633 |
tgtgataattttcaagagttcttgaagaaatccatgg-tagagtgtgtagagggagaaagcttatgcaaaccgtccaaaaagtaacattttggtcatatt |
75535 |
T |
|
| Q |
201 |
accccaatttcaatagacatctctcgtgattggaccttt |
239 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||| |
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| T |
75534 |
accccaatttcaaaagacatctctcgtgattggaccttt |
75496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 24966412 - 24966175
Alignment:
| Q |
1 |
atgttaattggcaattaatagggtagttgcaatttacgtcagatttatggtcttccatatttagatgaaagattttgctgtcacatatgcatcattgttt |
100 |
Q |
| |
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|||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
24966412 |
atgttagttgggaattaatagggtagttgcaatttacgttagatttatggtcttccatatctagatgaaagattttgctgtcacatgtgcatcattgttt |
24966313 |
T |
|
| Q |
101 |
tgtgataattttcaagagttcctgaagaaatccatggttagagtgtgtagagggagaaagcttatgcaaaccgtccaaaaagtaacattttggtcatatt |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24966312 |
tgtgataattttcaagagttcttgaagaaatccatgg-tagagtgtgtagagggagaaagcttatgcaaaccgtccaaaaagtaacattttggtcatatt |
24966214 |
T |
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| Q |
201 |
accccaatttcaatagacatctctcgtgattggaccttt |
239 |
Q |
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| T |
24966213 |
accccaatttcaaaagacatctctcgtgattggaccttt |
24966175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 29317893 - 29317723
Alignment:
| Q |
1 |
atgttaattggcaattaatagggtagttgcaatttacgtcagatttatggtcttccatatttagatgaaagattttgctgtcacatatgcatcattgttt |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
29317893 |
atgttaattggcaattaatatggtagttgcaatttacgtcagatttatggtcttccatatttagatgaaagattttgatgtcacatgtgcatcattgttt |
29317794 |
T |
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| Q |
101 |
tgtgataattttcaagagttcctgaagaaatccatggttagagtgtgtagagggagaaagcttatgcaaac |
171 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29317793 |
tgtgataactttcaagagttcctaaagaaatccatggttagagtgtgtagagggagaaagcttatgcaaac |
29317723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 29315611 - 29315539
Alignment:
| Q |
167 |
caaaccgtccaaaaagtaacattttggtcatattaccccaatttcaatagacatctctcgtgattggaccttt |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29315611 |
caaaccgtccaaaaagtaacattttggtcatattaccccaatttcaaaagacatctctcgtgattggaccttt |
29315539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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