View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4597_low_15 (Length: 244)
Name: NF4597_low_15
Description: NF4597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4597_low_15 |
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| [»] scaffold0046 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 29318600 - 29318825
Alignment:
| Q |
1 |
taaacgtatgctctacaactgttcacagactaagttataacaataaagaaaacactaacaacaaacatgtatttgtatcataatagtatgcttttgtgtg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29318600 |
taaacgtatgctctacaactgttcacagactaagttataacaataaataaaacactaacaacaaacatgtatttgtatcataatagtatgcttttgtttg |
29318699 |
T |
|
| Q |
101 |
catcccaaacacaggtggaattcacgttatgtttctgatattaattcaggctatttataccgacaatattgcttgaatccacttcatacaatgaaagata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29318700 |
catcccaaacacaggtggaattcacgttatgtttctgatattaattcaggctatttataccgacaatattgcttgaatccacttcatacaatgaaagata |
29318799 |
T |
|
| Q |
201 |
aactgaatttcaaatggctgtacatt |
226 |
Q |
| |
|
|||||||||| ||||||||||||||| |
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| T |
29318800 |
aactgaattttaaatggctgtacatt |
29318825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 28469023 - 28468798
Alignment:
| Q |
1 |
taaacgtatgctctacaactgttcacagactaagttataacaataaagaaaacactaacaacaaacatgtatttgtatcataatagtatgcttttgtgtg |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28469023 |
taaacgtatgctctacaattgttcacagtctgagttataacaataaagaaaacactaacaacaaacatgtatttgtatcataatagtaagcttttgtgtg |
28468924 |
T |
|
| Q |
101 |
catcccaaacacaggtggaattcacgttatgtttctgatattaattcaggctatttataccgacaatattgcttgaatccacttcatacaatgaaagata |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28468923 |
catcccaaacacaggtggaattcatgttatgtttctgatattaattcaggctatttataccgacaatattgcttgaatccacttcatacaatgaaagata |
28468824 |
T |
|
| Q |
201 |
aactgaatttcaaatggctgtacatt |
226 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
28468823 |
aactgaatttcaaatggctgtacatt |
28468798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 34734711 - 34734936
Alignment:
| Q |
1 |
taaacgtatgctctacaactgttcacagactaagttataacaataaagaaaacactaacaacaaacatgtatttgtatcataatagtatgcttttgtgtg |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34734711 |
taaacgtatgctctacaattgttcacagtctgagttataacaataaagaaaacactaacaacaaacatgtatttgtatcataatagtaagcttttgtgtg |
34734810 |
T |
|
| Q |
101 |
catcccaaacacaggtggaattcacgttatgtttctgatattaattcaggctatttataccgacaatattgcttgaatccacttcatacaatgaaagata |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34734811 |
catcccaaacacaggtggaattcatgttatgtttctgatattaattcaggctatttataccgacaatattgcttgaatccacttcatacaatgaaagata |
34734910 |
T |
|
| Q |
201 |
aactgaatttcaaatggctgtacatt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
34734911 |
aactgaatttcaaatggctgtacatt |
34734936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 76016 - 76241
Alignment:
| Q |
1 |
taaacgtatgctctacaactgttcacagactaagttataacaataaagaaaacactaacaacaaacatgtatttgtatcataatagtatgcttttgtgtg |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
76016 |
taaacgtatgctctacaattgttcacagtctgagttataacaataaagaaaacactaacaacaaacatgtatttgtatcataatggtaagcttttgtgtg |
76115 |
T |
|
| Q |
101 |
catcccaaacacaggtggaattcacgttatgtttctgatattaattcaggctatttataccgacaatattgcttgaatccacttcatacaatgaaagata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
76116 |
catcccaaacacaggtggaattcacgttatgtttctgatattaattcaggctatttataccgacaatattgcttgaatccacttcatacaatgaaagata |
76215 |
T |
|
| Q |
201 |
aactgaatttcaaatggctgtacatt |
226 |
Q |
| |
|
|||||||||||||||||| ||||||| |
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| T |
76216 |
aactgaatttcaaatggccgtacatt |
76241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 24966695 - 24966920
Alignment:
| Q |
1 |
taaacgtatgctctacaactgttcacagactaagttataacaataaagaaaacactaacaacaaacatgtatttgtatcataatagtatgcttttgtgtg |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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|
| T |
24966695 |
taaacgtatgctctacaattgttcacagtctgagttataacaataaagaaaacactaacaacaaacatgtatttgtatcataatggtaagcttttgtgtg |
24966794 |
T |
|
| Q |
101 |
catcccaaacacaggtggaattcacgttatgtttctgatattaattcaggctatttataccgacaatattgcttgaatccacttcatacaatgaaagata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24966795 |
catcccaaacacaggtggaattcacgttatgtttctgatattaattcaggctatttataccgacaatattgcttgaatccacttcatacaatgaaagata |
24966894 |
T |
|
| Q |
201 |
aactgaatttcaaatggctgtacatt |
226 |
Q |
| |
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|||||||||||||||||| ||||||| |
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|
| T |
24966895 |
aactgaatttcaaatggccgtacatt |
24966920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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