View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4597_low_17 (Length: 237)
Name: NF4597_low_17
Description: NF4597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4597_low_17 |
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| [»] chr3 (4 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 52023687 - 52023468
Alignment:
| Q |
18 |
ataactagccattggtgtgtggtattgataatggtggctcgagataaattgctgcaattatggccactgcaagattatttcctataaaagaccttaggtt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52023687 |
ataactagccattggtgtgtggtattgataatggtggctcgagataaattgctgcaattatggccactgcaagattatttcctataaaagaccttagatt |
52023588 |
T |
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| Q |
118 |
caaagcaacaaagctagctgaggcaacaacaacaaggattattgtaatccattgaagaatgccaactggaataagaaatagaaactgaaaattttatgaa |
217 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52023587 |
caaagcaacaaagccagctgaggcaacaacaacaaggattattgtaatccattgaagaatgccaactggaataagaaatagaaactgaaaattgtatgaa |
52023488 |
T |
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| Q |
218 |
cagtagtttgaaaatttgtt |
237 |
Q |
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|||||||||||||||||||| |
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| T |
52023487 |
cagtagtttgaaaatttgtt |
52023468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 38683019 - 38683235
Alignment:
| Q |
18 |
ataactagccattggtgtgtggtattgataatggtggctcgagataaattgctgcaattatggccactgcaagattatttcctataaaagaccttaggtt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38683019 |
ataactagccattggtgtgtggtattgataatggtggttcgagataaattgctgcaattatggccactgcaagattatttcctataaaagaccttaggtt |
38683118 |
T |
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| Q |
118 |
caaagcaacaaagctagctgaggcaacaacaacaaggattattgtaatccattgaagaatgccaactggaataagaaatagaaactgaaaattttatgaa |
217 |
Q |
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| T |
38683119 |
caaagcaacaaagctagctgagg---caacaacaaggattattgtaatcaattgaagaatgccgactggaataagaaatagaaactgaaaattttatgaa |
38683215 |
T |
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| Q |
218 |
cagtagtttgaaaatttgtt |
237 |
Q |
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| T |
38683216 |
cagtagtttgaaaatttgtt |
38683235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 71 - 208
Target Start/End: Original strand, 30949633 - 30949770
Alignment:
| Q |
71 |
gcaattatggccactgcaagattatttcctataaaagaccttaggttcaaagcaacaaagctagctgaggcaacaacaacaaggattattgtaatccatt |
170 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| || | |||||||||| | ||||| |
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| T |
30949633 |
gcaattatggccactgaaagatcatttcctataaaagaccttaggttcaaagaaacgaagctagctgaggcaccaccggtaaggattattatgatccacc |
30949732 |
T |
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| Q |
171 |
gaagaatgccaactggaataagaaatagaaactgaaaa |
208 |
Q |
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| T |
30949733 |
gaagaatctcaactggaataagcaatagaaactgaaaa |
30949770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 208
Target Start/End: Original strand, 30965489 - 30965582
Alignment:
| Q |
115 |
gttcaaagcaacaaagctagctgaggcaacaacaacaaggattattgtaatccattgaagaatgccaactggaataagaaatagaaactgaaaa |
208 |
Q |
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| T |
30965489 |
gttcaaagaaacgaagctagctgaggcaccaccggtaaggattattatgatccaccgaagaatctcaactggaataagcaatagaaactgaaaa |
30965582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 40012977 - 40012758
Alignment:
| Q |
18 |
ataactagccattggtgtgtggtattgataatggtggctcgagataaattgctgcaattatggccactgcaagattatttcctataaaagaccttaggtt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40012977 |
ataactagccattggtgtgtggtattgataatggtggctcgagataaattgctgcaattatggccactgcaagattatttcctataaaagaccttaggtt |
40012878 |
T |
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| Q |
118 |
caaagcaacaaagctagctgaggcaacaacaacaaggattattgtaatccattgaagaatgccaactggaataagaaatagaaactgaaaattttatgaa |
217 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||| |
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| T |
40012877 |
caaagcaacaaagctagctgaggcaacgacaacaaggattattgtaatccattgaagaatgccaactggaataagagatagaaactaaaaaatttatgaa |
40012778 |
T |
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| Q |
218 |
cagtagtttgaaaatttgtt |
237 |
Q |
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|||||||||||||||||||| |
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| T |
40012777 |
cagtagtttgaaaatttgtt |
40012758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 7857815 - 7857615
Alignment:
| Q |
18 |
ataactagccattggtgtgtggtattgataatggtggctcgagataaattgctgcaattatggccactgcaagattatttcctat-aaaagaccttaggt |
116 |
Q |
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|||| |||||||||| |||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7857815 |
ataattagccattggggtgtggtagtgataatggtggcttgagataacttgctgcaattatggccactgcaagattatttcctataaaaagaccttaggt |
7857716 |
T |
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| Q |
117 |
tcaaagcaacaaagctagctgaggcaacaacaacaaggattattgtaatccattgaagaatgccaactggaataagaaa-tagaaactgaaaattttatg |
215 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||| |||||| ||| |||||||||||||||||||| |
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| T |
7857715 |
tcaaagcaacaaagctagctgaggcaacaaccgcaaggattattgtaatcgattgaagaacaccaactagaataaaaaattagaaactgaaaattttatg |
7857616 |
T |
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| Q |
216 |
a |
216 |
Q |
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| T |
7857615 |
a |
7857615 |
T |
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