View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4597_low_2 (Length: 521)
Name: NF4597_low_2
Description: NF4597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4597_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 20 - 504
Target Start/End: Original strand, 40471095 - 40471579
Alignment:
| Q |
20 |
tcaccttcttttacttctagagtcatcttcctctgcctcaaatcctttgcttccttcctcacattccccgcttagaccacaagaagtttctagagcagaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40471095 |
tcaccttcttttacttctagagtcatcttcctctgcctcaaatcctttgcttccttcctcacattccccacttagaccacaagaagtttctagagcagaa |
40471194 |
T |
|
| Q |
120 |
tcattaggctgtgaagctttgacttgattctctattcttccttcattcctttcattctgattactattattactccatactttatcttgaaccattccat |
219 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40471195 |
tcatcaggcagtgaagctttgacttgattctctattcttccttcattcctttcattctgattactattattactccatactttatcttgaaccattccat |
40471294 |
T |
|
| Q |
220 |
cagaaatcattcctgatgttgctcccgagtttcgcttttgatgttgtggctttccatggttgtgttcacctttataaacaatttctgcaatctcaccatc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40471295 |
cagaaatcattcctgatgttgctcccgagtttcgcttttgatgttgtggctttccatggttgtgttcacctttataaacaatttctgcaatctcaccatc |
40471394 |
T |
|
| Q |
320 |
taatgatctttcaactttctttttaactggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatat |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40471395 |
taatgatctttcaactttctttttaactggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatat |
40471494 |
T |
|
| Q |
420 |
tttctccagttatatccatcatacgaaggtctatcagcattatttgtggatggtaatgctttttggtcctcctcaatgttctgtg |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40471495 |
tttctccagttatatccatcatacgaaggtctatcagcattatttgtggatggtaatgctttttggtcctcctcaatgttctgtg |
40471579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 26332543 - 26332607
Alignment:
| Q |
363 |
gtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctcca |
427 |
Q |
| |
|
||||||||||||||||| || |||| ||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
26332543 |
gtgcacttgtaataactacgcggattttcgcttcctttcacttgtttctgtccatattttctcca |
26332607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 190 - 504
Target Start/End: Complemental strand, 16863893 - 16863593
Alignment:
| Q |
190 |
tactccatactttatcttgaaccattccatcagaaatcattcctgatgttgctcccgagtttcgcttttgatgttgtggctttccatggttgtgttcacc |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16863893 |
tactccatactttatcttgaaccattccatcagaagtcattcctgatgttgctcccgagtttcgcttttgatgttgtggctttccatggttgtgttcacc |
16863794 |
T |
|
| Q |
290 |
tttataaacaatttctgcaatctcaccatctaatgatctttcaactttctttttaactggacaattaggatatgtgcacttgtaataacttcgaggatac |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16863793 |
tttataaacaatttctgcaatctcaccatctaatgatctttcaactttctttttaactggataattaggatatgtgcacttgtaataacttcgaagatac |
16863694 |
T |
|
| Q |
390 |
tcgcttccttttacttgcttctgtccatattttctccagttatatccatcatacgaaggtctatcagcattatttgtggatggtaatgctttttggtcct |
489 |
Q |
| |
|
||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16863693 |
tcg--------------cttctttccatattttctctagttatatccatcatacgaaggtctatcaacattatttgtggatggtaatgctttttggtcct |
16863608 |
T |
|
| Q |
490 |
cctcaatgttctgtg |
504 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
16863607 |
cctcaatgctctgtg |
16863593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 333 - 439
Target Start/End: Complemental strand, 2056406 - 2056300
Alignment:
| Q |
333 |
actttctttttaactggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagttat |
432 |
Q |
| |
|
||||||||||||||||||||||| | || || |||||||| ||||||||||| |||||||| || || |||||||| || |||||||||||||| |||| |
|
|
| T |
2056406 |
actttctttttaactggacaatttgaatgagtacacttgtagtaacttcgagggtactcgctacccttaacttgcttttggccatattttctccaattat |
2056307 |
T |
|
| Q |
433 |
atccatc |
439 |
Q |
| |
|
||||||| |
|
|
| T |
2056306 |
atccatc |
2056300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 347 - 441
Target Start/End: Original strand, 26967036 - 26967130
Alignment:
| Q |
347 |
tggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagttatatccatcat |
441 |
Q |
| |
|
|||||||||||| || ||||| || |||||||||| |||| || |||||||| ||||| || ||||||||||||||||| || |||||||||| |
|
|
| T |
26967036 |
tggacaattagggtaagtgcatttataataacttcttggattttcacttcctttcacttgtttttgtccatattttctccaattgtatccatcat |
26967130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 348 - 441
Target Start/End: Original strand, 18876301 - 18876394
Alignment:
| Q |
348 |
ggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagttatatccatcat |
441 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||| ||||||| ||||| || || |||||||| ||||| |||||||| || ||||||| |
|
|
| T |
18876301 |
ggacagttaggatgcgtgcacttgtaataacttcgaggaaactcgctacctttcacctgtttctgtccgtatttcctccagttgtagccatcat |
18876394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 441
Target Start/End: Original strand, 31615312 - 31615430
Alignment:
| Q |
323 |
tgatctttcaactttctttttaactggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatatttt |
422 |
Q |
| |
|
|||||| ||||||||||| || ||||| ||||| |||||||| ||||| ||||||| |||| || ||||| || |||||||| |||||||||||| |
|
|
| T |
31615312 |
tgatctctcaactttcttctttgtaggacagttagggtatgtgcatttgtagtaacttctcggattttcacttcccttaacttgcttttgtccatatttt |
31615411 |
T |
|
| Q |
423 |
ctccagttatatccatcat |
441 |
Q |
| |
|
| ||| || |||||||||| |
|
|
| T |
31615412 |
cgccaattgtatccatcat |
31615430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 439
Target Start/End: Complemental strand, 3669270 - 3669194
Alignment:
| Q |
363 |
gtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagttatatccatc |
439 |
Q |
| |
|
||||||||||||||||||| |||| || |||||||| ||||| |||| ||||||||||||||| || |||||||| |
|
|
| T |
3669270 |
gtgcacttgtaataacttcttggattttcacttcctttcacttgtttctctccatattttctccacttgtatccatc |
3669194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 32110260 - 32110321
Alignment:
| Q |
369 |
ttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagtt |
430 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| ||||| || |||||||| || |||||||| |
|
|
| T |
32110260 |
ttgtaataacttcgaggaaactcgcaacctttcacttgtttttgtccatacttcctccagtt |
32110321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University