View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4597_low_5 (Length: 396)

Name: NF4597_low_5
Description: NF4597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4597_low_5
NF4597_low_5
[»] chr5 (19 HSPs)
chr5 (20-66)||(24477781-24477827)
chr5 (20-65)||(4695470-4695515)
chr5 (21-65)||(9996642-9996686)
chr5 (20-63)||(6238698-6238741)
chr5 (20-63)||(36016655-36016698)
chr5 (17-63)||(21151193-21151239)
chr5 (20-63)||(6900408-6900451)
chr5 (20-63)||(38355684-38355727)
chr5 (23-63)||(33907498-33907538)
chr5 (14-65)||(7826388-7826439)
chr5 (21-64)||(20337727-20337770)
chr5 (17-63)||(21158334-21158380)
chr5 (19-64)||(14505341-14505386)
chr5 (19-63)||(17017071-17017115)
chr5 (30-64)||(16749559-16749593)
chr5 (35-64)||(16654530-16654559)
chr5 (35-63)||(7073459-7073487)
chr5 (23-63)||(15421595-15421635)
chr5 (35-63)||(38062417-38062445)
[»] chr1 (18 HSPs)
chr1 (21-66)||(9660485-9660530)
chr1 (20-63)||(33189424-33189467)
chr1 (19-63)||(700560-700604)
chr1 (23-63)||(23973640-23973680)
chr1 (20-64)||(32058239-32058283)
chr1 (23-66)||(21720446-21720489)
chr1 (19-63)||(40411981-40412025)
chr1 (19-63)||(50511431-50511475)
chr1 (21-63)||(33814377-33814419)
chr1 (21-63)||(33873847-33873889)
chr1 (34-64)||(46158470-46158500)
chr1 (35-64)||(5115546-5115575)
chr1 (34-63)||(12749987-12750016)
chr1 (19-52)||(15699277-15699310)
chr1 (35-64)||(44372347-44372376)
chr1 (34-63)||(45756920-45756949)
chr1 (35-63)||(6714024-6714052)
chr1 (19-63)||(44922822-44922866)
[»] chr7 (18 HSPs)
chr7 (20-64)||(39489005-39489049)
chr7 (20-63)||(10993704-10993747)
chr7 (20-63)||(16526581-16526624)
chr7 (19-63)||(40921241-40921285)
chr7 (21-64)||(17471287-17471330)
chr7 (21-64)||(17581884-17581927)
chr7 (19-63)||(18833681-18833725)
chr7 (35-64)||(34185750-34185779)
chr7 (35-64)||(34202128-34202157)
chr7 (35-64)||(37470964-37470993)
chr7 (36-64)||(1874040-1874068)
chr7 (35-63)||(2620812-2620840)
chr7 (35-63)||(5216336-5216364)
chr7 (19-63)||(13598698-13598742)
chr7 (35-63)||(33626392-33626420)
chr7 (35-63)||(40682974-40683002)
chr7 (35-63)||(47761168-47761196)
chr7 (35-63)||(48949033-48949061)
[»] chr2 (20 HSPs)
chr2 (20-64)||(21104403-21104447)
chr2 (19-64)||(10710421-10710466)
chr2 (20-63)||(15560245-15560288)
chr2 (21-57)||(17921596-17921632)
chr2 (19-63)||(30556238-30556282)
chr2 (20-63)||(15613306-15613349)
chr2 (19-64)||(23334704-23334749)
chr2 (34-65)||(26555811-26555842)
chr2 (29-64)||(28223546-28223581)
chr2 (34-64)||(5272030-5272060)
chr2 (35-64)||(13248332-13248361)
chr2 (34-63)||(29205667-29205696)
chr2 (34-63)||(40860712-40860741)
chr2 (37-65)||(10821711-10821739)
chr2 (19-63)||(19944238-19944282)
chr2 (21-65)||(20921884-20921928)
chr2 (36-64)||(25096678-25096706)
chr2 (28-64)||(25868378-25868414)
chr2 (35-63)||(31743513-31743541)
chr2 (35-63)||(34314362-34314390)
[»] scaffold0564 (1 HSPs)
scaffold0564 (20-63)||(9780-9823)
[»] chr8 (19 HSPs)
chr8 (20-63)||(2350518-2350561)
chr8 (20-63)||(30436014-30436057)
chr8 (20-63)||(35812982-35813025)
chr8 (19-64)||(32018939-32018984)
chr8 (19-64)||(38895289-38895334)
chr8 (20-63)||(3653974-3654017)
chr8 (64-117)||(24724569-24724619)
chr8 (177-227)||(24724787-24724837)
chr8 (28-64)||(5913945-5913981)
chr8 (24-64)||(42738507-42738547)
chr8 (20-63)||(23221730-23221773)
chr8 (19-70)||(40027000-40027051)
chr8 (35-64)||(42935220-42935249)
chr8 (35-63)||(5549453-5549481)
chr8 (35-63)||(6266913-6266941)
chr8 (35-63)||(26098898-26098926)
chr8 (35-63)||(37819837-37819865)
chr8 (35-63)||(38231196-38231224)
chr8 (35-63)||(40028379-40028407)
[»] chr4 (22 HSPs)
chr4 (20-63)||(951766-951809)
chr4 (20-63)||(43285413-43285456)
chr4 (20-63)||(52463235-52463278)
chr4 (20-64)||(32768487-32768531)
chr4 (19-63)||(41882605-41882649)
chr4 (21-64)||(47295974-47296017)
chr4 (21-63)||(20033949-20033991)
chr4 (21-63)||(45522897-45522939)
chr4 (19-63)||(16624098-16624142)
chr4 (21-63)||(32594887-32594929)
chr4 (24-65)||(27870409-27870450)
chr4 (35-66)||(2323468-2323499)
chr4 (28-67)||(32556312-32556351)
chr4 (35-65)||(4709819-4709849)
chr4 (23-64)||(19823062-19823103)
chr4 (35-64)||(21808400-21808429)
chr4 (19-64)||(41856006-41856051)
chr4 (34-63)||(54134172-54134201)
chr4 (30-66)||(14815485-14815521)
chr4 (23-63)||(31615960-31616000)
chr4 (35-63)||(51031751-51031779)
chr4 (35-63)||(56263854-56263882)
[»] chr3 (24 HSPs)
chr3 (20-63)||(6884246-6884289)
chr3 (20-63)||(43745832-43745875)
chr3 (20-63)||(46312256-46312299)
chr3 (20-64)||(43736672-43736716)
chr3 (20-63)||(27877929-27877972)
chr3 (19-63)||(36638697-36638741)
chr3 (19-63)||(48912743-48912787)
chr3 (19-63)||(49507961-49508005)
chr3 (19-64)||(29522252-29522297)
chr3 (19-63)||(3974182-3974226)
chr3 (23-63)||(35603283-35603323)
chr3 (19-63)||(51884763-51884807)
chr3 (21-63)||(1459732-1459774)
chr3 (35-64)||(1695592-1695621)
chr3 (35-68)||(7909600-7909633)
chr3 (34-63)||(21075582-21075611)
chr3 (35-64)||(54312811-54312840)
chr3 (19-63)||(3995651-3995695)
chr3 (35-63)||(7400322-7400350)
chr3 (35-63)||(17518073-17518101)
chr3 (19-63)||(24570886-24570930)
chr3 (35-63)||(28815578-28815606)
chr3 (35-63)||(33912280-33912308)
chr3 (23-63)||(49318919-49318959)
[»] chr6 (11 HSPs)
chr6 (20-64)||(11369201-11369245)
chr6 (21-63)||(12075821-12075863)
chr6 (20-63)||(12271376-12271419)
chr6 (21-64)||(15071206-15071249)
chr6 (20-63)||(26519969-26520012)
chr6 (21-63)||(31654852-31654894)
chr6 (19-65)||(32464861-32464907)
chr6 (35-64)||(10998138-10998167)
chr6 (35-64)||(22987624-22987653)
chr6 (35-64)||(23800741-23800770)
chr6 (35-63)||(26554665-26554693)
[»] scaffold0041 (1 HSPs)
scaffold0041 (19-63)||(51810-51854)
[»] scaffold0661 (1 HSPs)
scaffold0661 (19-63)||(1021-1065)
[»] scaffold0486 (1 HSPs)
scaffold0486 (35-63)||(205-233)
[»] scaffold0173 (1 HSPs)
scaffold0173 (35-63)||(26137-26165)
[»] scaffold0005 (1 HSPs)
scaffold0005 (30-66)||(24190-24226)


Alignment Details
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 24477781 - 24477827
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctctaccc 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  24477781 gggccgggcctaaacgggccgggccgcccgttttgacagctctaccc 24477827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 4695515 - 4695470
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctctacc 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  4695515 gggccgggcctaaacgggccgggccgcccgttttgacagctctacc 4695470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 9996642 - 9996686
Alignment:
Q  21 ggccgggcctaaacgggccgggccgcccgttttgacagctctacc 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  9996642 ggccgggcctaaacgggccgggccgcccgttttgacagctctacc 9996686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 6238698 - 6238741
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  6238698 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 6238741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 36016655 - 36016698
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  36016655 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 36016698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 21151239 - 21151193
Alignment:
Q  17 tcagggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  21151239 tcagggccggccctaaacgggccgggccgcccgttttgacagctcta 21151193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 6900408 - 6900451
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  6900408 gggccgagcctaaacgggccgggccgcccgttttgacagctcta 6900451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 38355727 - 38355684
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  38355727 gggccgggcctaaacgggtcgggccgcccgttttgacagctcta 38355684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 33907538 - 33907498
Alignment:
Q  23 ccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  33907538 ccgggcctaaacgggtcgggccgcccgttttgacagctcta 33907498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 7826439 - 7826388
Alignment:
Q  14 tcatcagggccgggcctaaacgggccgggccgcccgttttgacagctctacc 65  Q
    |||| |||||||| |||||||| || ||||||||||||||||||||||||||    
T  7826439 tcattagggccggccctaaacgtgcagggccgcccgttttgacagctctacc 7826388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 20337770 - 20337727
Alignment:
Q  21 ggccgggcctaaacgggccgggccgcccgttttgacagctctac 64  Q
    ||||||||||||||||| |||||||||| |||||||||||||||    
T  20337770 ggccgggcctaaacgggtcgggccgcccattttgacagctctac 20337727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 21158380 - 21158334
Alignment:
Q  17 tcagggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||||||| |||||||||| ||||| |||||||||||||||||||    
T  21158380 tcagggccggccctaaacgggtcgggctgcccgttttgacagctcta 21158334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 14505386 - 14505341
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctctac 64  Q
    |||||||| ||||||| |||||| ||||||||||||||||||||||    
T  14505386 agggccggccctaaacaggccggaccgcccgttttgacagctctac 14505341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 17017071 - 17017115
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||||| |||||||||| ||||||| |||||||||||||||||    
T  17017071 agggccggacctaaacgggtcgggccgtccgttttgacagctcta 17017115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 16749559 - 16749593
Alignment:
Q  30 taaacgggccgggccgcccgttttgacagctctac 64  Q
    |||||||||| ||||||||||||||||||||||||    
T  16749559 taaacgggccaggccgcccgttttgacagctctac 16749593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Original strand, 16654530 - 16654559
Alignment:
Q  35 gggccgggccgcccgttttgacagctctac 64  Q
    ||||||||||||||||||||||||||||||    
T  16654530 gggccgggccgcccgttttgacagctctac 16654559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 7073487 - 7073459
Alignment:
Q  35 gggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||||||||||||||    
T  7073487 gggccgggccgcccgttttgacagctcta 7073459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 15421595 - 15421635
Alignment:
Q  23 ccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||| ||||||||||||||| |||||||||||| |||||||    
T  15421595 ccggccctaaacgggccgggacgcccgttttgatagctcta 15421635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 38062445 - 38062417
Alignment:
Q  35 gggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||||||||||||||    
T  38062445 gggccgggccgcccgttttgacagctcta 38062417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 9660530 - 9660485
Alignment:
Q  21 ggccgggcctaaacgggccgggccgcccgttttgacagctctaccc 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  9660530 ggccgggcctaaacgggccgggccgcccgttttgacagctctaccc 9660485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 33189424 - 33189467
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  33189424 gggccgggcctaaacgggctgggccgcccgttttgacagctcta 33189467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 700560 - 700604
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||    
T  700560 agggccggccctaaacgggccgggtcgcccgttttgacagctcta 700604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 23973680 - 23973640
Alignment:
Q  23 ccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  23973680 ccggccctaaacgggccgggccgcccgttttgacagctcta 23973640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 32058239 - 32058283
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctctac 64  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||    
T  32058239 gggccgggcttaaacgggccggggcgcccgttttgacagctctac 32058283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 21720446 - 21720489
Alignment:
Q  23 ccgggcctaaacgggccgggccgcccgttttgacagctctaccc 66  Q
    |||| |||||||||||||| ||||||||||||||||||||||||    
T  21720446 ccggccctaaacgggccggtccgcccgttttgacagctctaccc 21720489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 40412025 - 40411981
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||||| | |||||||||||| |||||||||||||||||||||    
T  40412025 agggccggccataaacgggccggaccgcccgttttgacagctcta 40411981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 50511475 - 50511431
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||||  |||||||||||||| |||||||||||||||||||||    
T  50511475 agggccgatcctaaacgggccggaccgcccgttttgacagctcta 50511431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 33814419 - 33814377
Alignment:
Q  21 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||| ||||||||| |||||||| |||||||||||||||||    
T  33814419 ggccggccctaaacggaccgggccgtccgttttgacagctcta 33814377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 33873889 - 33873847
Alignment:
Q  21 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||| ||||||||| |||||||| |||||||||||||||||    
T  33873889 ggccggccctaaacggaccgggccgtccgttttgacagctcta 33873847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 64
Target Start/End: Original strand, 46158470 - 46158500
Alignment:
Q  34 cgggccgggccgcccgttttgacagctctac 64  Q
    |||||||||||||||||||||||||||||||    
T  46158470 cgggccgggccgcccgttttgacagctctac 46158500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Original strand, 5115546 - 5115575
Alignment:
Q  35 gggccgggccgcccgttttgacagctctac 64  Q
    ||||||||||||||||||||||||||||||    
T  5115546 gggccgggccgcccgttttgacagctctac 5115575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Original strand, 12749987 - 12750016
Alignment:
Q  34 cgggccgggccgcccgttttgacagctcta 63  Q
    ||||||||||||||||||||||||||||||    
T  12749987 cgggccgggccgcccgttttgacagctcta 12750016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 15699310 - 15699277
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttt 52  Q
    |||||||| |||||||||||||||||||||||||    
T  15699310 agggccggccctaaacgggccgggccgcccgttt 15699277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 44372376 - 44372347
Alignment:
Q  35 gggccgggccgcccgttttgacagctctac 64  Q
    ||||||||||||||||||||||||||||||    
T  44372376 gggccgggccgcccgttttgacagctctac 44372347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 45756949 - 45756920
Alignment:
Q  34 cgggccgggccgcccgttttgacagctcta 63  Q
    ||||||||||||||||||||||||||||||    
T  45756949 cgggccgggccgcccgttttgacagctcta 45756920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 6714052 - 6714024
Alignment:
Q  35 gggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||||||||||||||    
T  6714052 gggccgggccgcccgttttgacagctcta 6714024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 44922822 - 44922866
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||| | |||||| ||||||| |||||||||||||||||||||    
T  44922822 agggccagccctaaatgggccggaccgcccgttttgacagctcta 44922866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 39489049 - 39489005
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctctac 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  39489049 gggccgggcctaaacgggccgggccgcccgttttgacagctctac 39489005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 10993704 - 10993747
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  10993704 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 10993747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 16526581 - 16526624
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  16526581 gggccgggcctaaacgggccgggccgcccattttgacagctcta 16526624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 40921285 - 40921241
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||||| |||||||||| |||||||||||||||||||||||||    
T  40921285 agggccggccctaaacgggtcgggccgcccgttttgacagctcta 40921241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 17471330 - 17471287
Alignment:
Q  21 ggccgggcctaaacgggccgggccgcccgttttgacagctctac 64  Q
    ||||||||||||| |||| |||||||||||||||||||||||||    
T  17471330 ggccgggcctaaaagggcagggccgcccgttttgacagctctac 17471287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 17581884 - 17581927
Alignment:
Q  21 ggccgggcctaaacgggccgggccgcccgttttgacagctctac 64  Q
    ||||||||||||| |||| |||||||||||||||||||||||||    
T  17581884 ggccgggcctaaaagggcagggccgcccgttttgacagctctac 17581927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 18833725 - 18833681
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||||| |||| ||||||| |||||||||||||||||||||||    
T  18833725 agggccggccctacacgggccaggccgcccgttttgacagctcta 18833681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 34185779 - 34185750
Alignment:
Q  35 gggccgggccgcccgttttgacagctctac 64  Q
    ||||||||||||||||||||||||||||||    
T  34185779 gggccgggccgcccgttttgacagctctac 34185750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 34202157 - 34202128
Alignment:
Q  35 gggccgggccgcccgttttgacagctctac 64  Q
    ||||||||||||||||||||||||||||||    
T  34202157 gggccgggccgcccgttttgacagctctac 34202128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 37470993 - 37470964
Alignment:
Q  35 gggccgggccgcccgttttgacagctctac 64  Q
    ||||||||||||||||||||||||||||||    
T  37470993 gggccgggccgcccgttttgacagctctac 37470964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 64
Target Start/End: Original strand, 1874040 - 1874068
Alignment:
Q  36 ggccgggccgcccgttttgacagctctac 64  Q
    |||||||||||||||||||||||||||||    
T  1874040 ggccgggccgcccgttttgacagctctac 1874068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 2620840 - 2620812
Alignment:
Q  35 gggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||||||||||||||    
T  2620840 gggccgggccgcccgttttgacagctcta 2620812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 5216336 - 5216364
Alignment:
Q  35 gggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||||||||||||||    
T  5216336 gggccgggccgcccgttttgacagctcta 5216364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 13598698 - 13598742
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||||  |||||||| ||||||||||||||||||||| |||||    
T  13598698 agggccgaccctaaacgagccgggccgcccgttttgacaactcta 13598742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 33626420 - 33626392
Alignment:
Q  35 gggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||||||||||||||    
T  33626420 gggccgggccgcccgttttgacagctcta 33626392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 40683002 - 40682974
Alignment:
Q  35 gggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||||||||||||||    
T  40683002 gggccgggccgcccgttttgacagctcta 40682974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 47761196 - 47761168
Alignment:
Q  35 gggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||||||||||||||    
T  47761196 gggccgggccgcccgttttgacagctcta 47761168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 48949061 - 48949033
Alignment:
Q  35 gggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||||||||||||||    
T  48949061 gggccgggccgcccgttttgacagctcta 48949033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 21104403 - 21104447
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctctac 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  21104403 gggccgggcctaaacgggccgggccgcccgttttgacagctctac 21104447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 10710421 - 10710466
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctctac 64  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  10710421 agggccggccctaaacgggccgggccgcccgttttgacagctctac 10710466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 15560288 - 15560245
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  15560288 gggccggacctaaacgggccgggccgcccgttttgacagctcta 15560245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 17921596 - 17921632
Alignment:
Q  21 ggccgggcctaaacgggccgggccgcccgttttgaca 57  Q
    |||||||||||||||||||||||||||||||||||||    
T  17921596 ggccgggcctaaacgggccgggccgcccgttttgaca 17921632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 30556238 - 30556282
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||||| |||||||||||||||||||||||||||||| |||||    
T  30556238 agggccggccctaaacgggccgggccgcccgttttgacaactcta 30556282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 15613349 - 15613306
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||| ||||||||||| |||||||||||||||||||||||||    
T  15613349 gggccgagcctaaacgggtcgggccgcccgttttgacagctcta 15613306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 23334704 - 23334749
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctctac 64  Q
    |||||||| ||||||||||||||||| ||| |||||||||||||||    
T  23334704 agggccggccctaaacgggccgggccaccccttttgacagctctac 23334749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 26555842 - 26555811
Alignment:
Q  34 cgggccgggccgcccgttttgacagctctacc 65  Q
    ||||||||||||||||||||||||||||||||    
T  26555842 cgggccgggccgcccgttttgacagctctacc 26555811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 64
Target Start/End: Original strand, 28223546 - 28223581
Alignment:
Q  29 ctaaacgggccgggccgcccgttttgacagctctac 64  Q
    ||||||||||||| ||||||||||||||||||||||    
T  28223546 ctaaacgggccggaccgcccgttttgacagctctac 28223581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 64
Target Start/End: Original strand, 5272030 - 5272060
Alignment:
Q  34 cgggccgggccgcccgttttgacagctctac 64  Q
    |||||||||||||||||||||||||||||||    
T  5272030 cgggccgggccgcccgttttgacagctctac 5272060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Original strand, 13248332 - 13248361
Alignment:
Q  35 gggccgggccgcccgttttgacagctctac 64  Q
    ||||||||||||||||||||||||||||||    
T  13248332 gggccgggccgcccgttttgacagctctac 13248361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 29205696 - 29205667
Alignment:
Q  34 cgggccgggccgcccgttttgacagctcta 63  Q
    ||||||||||||||||||||||||||||||    
T  29205696 cgggccgggccgcccgttttgacagctcta 29205667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 40860741 - 40860712
Alignment:
Q  34 cgggccgggccgcccgttttgacagctcta 63  Q
    ||||||||||||||||||||||||||||||    
T  40860741 cgggccgggccgcccgttttgacagctcta 40860712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 10821739 - 10821711
Alignment:
Q  37 gccgggccgcccgttttgacagctctacc 65  Q
    |||||||||||||||||||||||||||||    
T  10821739 gccgggccgcccgttttgacagctctacc 10821711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 19944282 - 19944238
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||||  ||||||| || |||||||||||||||||||||||||    
T  19944282 agggccgatcctaaacaggtcgggccgcccgttttgacagctcta 19944238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 20921928 - 20921884
Alignment:
Q  21 ggccgggcctaaacgggccgggccgcccgttttgacagctctacc 65  Q
    |||||||||||| || | | |||||||||||||||||||||||||    
T  20921928 ggccgggcctaagcgagtctggccgcccgttttgacagctctacc 20921884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 64
Target Start/End: Original strand, 25096678 - 25096706
Alignment:
Q  36 ggccgggccgcccgttttgacagctctac 64  Q
    |||||||||||||||||||||||||||||    
T  25096678 ggccgggccgcccgttttgacagctctac 25096706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 25868414 - 25868378
Alignment:
Q  28 cctaaacgggccgggccgcccgttttgacagctctac 64  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  25868414 cctaaacgggtcgggccgcccgttttgacaactctac 25868378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 31743513 - 31743541
Alignment:
Q  35 gggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||||||||||||||    
T  31743513 gggccgggccgcccgttttgacagctcta 31743541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 34314362 - 34314390
Alignment:
Q  35 gggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||||||||||||||    
T  34314362 gggccgggccgcccgttttgacagctcta 34314390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 9823 - 9780
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9823 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 9780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 2350518 - 2350561
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  2350518 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 2350561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 30436057 - 30436014
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  30436057 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 30436014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 35813025 - 35812982
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  35813025 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 35812982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 32018939 - 32018984
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctctac 64  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  32018939 agggccggccctaaacgggccgggccgcccgttttgacagctctac 32018984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 38895289 - 38895334
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctctac 64  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  38895289 agggccggccctaaacgggccgggccgcccgttttgacagctctac 38895334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 3654017 - 3653974
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  3654017 gggccaggcctaaacgggccgggccgcccgttttgacagctcta 3653974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 24724569 - 24724619
Alignment:
Q  64 cccacggatttcaaaacaacatcaaatatatttagaaagtggcatctttttata 117  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  24724569 cccacggatttcaaaacaaca---aatatatttagaaagtggcatctttttata 24724619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 24724787 - 24724837
Alignment:
Q  177 ttgtatatccacaagtctaaataaaatttatttagacatacacatataatt 227  Q
    |||||||| ||||||||||||||||||| |||||| |||||||||||||||    
T  24724787 ttgtatattcacaagtctaaataaaattcatttaggcatacacatataatt 24724837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 5913945 - 5913981
Alignment:
Q  28 cctaaacgggccgggccgcccgttttgacagctctac 64  Q
    |||||||||||||||||||||||||||||||||||||    
T  5913945 cctaaacgggccgggccgcccgttttgacagctctac 5913981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 42738547 - 42738507
Alignment:
Q  24 cgggcctaaacgggccgggccgcccgttttgacagctctac 64  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  42738547 cgggcctaaacgggccaggccgcccgttttgacagctctac 42738507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 23221773 - 23221730
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||||||||| |||||| ||||||||||||    
T  23221773 gggccgggcctaaacgggccgggctgcccgtattgacagctcta 23221730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 40027051 - 40027000
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctctacccacgg 70  Q
    |||||||| |||||||||||||| ||| | |||||||||||||||| |||||    
T  40027051 agggccggccctaaacgggccggaccgtctgttttgacagctctacgcacgg 40027000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 42935249 - 42935220
Alignment:
Q  35 gggccgggccgcccgttttgacagctctac 64  Q
    ||||||||||||||||||||||||||||||    
T  42935249 gggccgggccgcccgttttgacagctctac 42935220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 5549453 - 5549481
Alignment:
Q  35 gggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||||||||||||||    
T  5549453 gggccgggccgcccgttttgacagctcta 5549481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 6266913 - 6266941
Alignment:
Q  35 gggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||||||||||||||    
T  6266913 gggccgggccgcccgttttgacagctcta 6266941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 26098898 - 26098926
Alignment:
Q  35 gggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||||||||||||||    
T  26098898 gggccgggccgcccgttttgacagctcta 26098926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 37819837 - 37819865
Alignment:
Q  35 gggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||||||||||||||    
T  37819837 gggccgggccgcccgttttgacagctcta 37819865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 38231224 - 38231196
Alignment:
Q  35 gggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||||||||||||||    
T  38231224 gggccgggccgcccgttttgacagctcta 38231196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 40028379 - 40028407
Alignment:
Q  35 gggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||||||||||||||    
T  40028379 gggccgggccgcccgttttgacagctcta 40028407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 951766 - 951809
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  951766 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 951809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 43285456 - 43285413
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  43285456 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 43285413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 52463278 - 52463235
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  52463278 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 52463235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 32768487 - 32768531
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctctac 64  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  32768487 gggccgggcctaaacgggccggaccgcccgttttgacagctctac 32768531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 41882649 - 41882605
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  41882649 agggccggccctaaacgggccgggccgcccgttttgacagctcta 41882605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 47295974 - 47296017
Alignment:
Q  21 ggccgggcctaaacgggccgggccgcccgttttgacagctctac 64  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  47295974 ggccgggcctaaacgggtcgggccgcccgttttgacagctctac 47296017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 20033991 - 20033949
Alignment:
Q  21 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  20033991 ggccggggctaaacgggccgggccgcccgttttgacagctcta 20033949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 45522897 - 45522939
Alignment:
Q  21 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  45522897 ggccgggcctaaacggggcgggccgcccgttttgacagctcta 45522939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 16624098 - 16624142
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||||| || |||||||||||||||||||||||||||||||||    
T  16624098 agggccggccccaaacgggccgggccgcccgttttgacagctcta 16624142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 32594887 - 32594929
Alignment:
Q  21 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    ||||| ||||||||||||||||||| |||||||||||||||||    
T  32594887 ggccgagcctaaacgggccgggccgtccgttttgacagctcta 32594929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 27870409 - 27870450
Alignment:
Q  24 cgggcctaaacgggccgggccgcccgttttgacagctctacc 65  Q
    |||||||||||||| |||||||||| ||||||||||||||||    
T  27870409 cgggcctaaacgggtcgggccgcccattttgacagctctacc 27870450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 66
Target Start/End: Complemental strand, 2323499 - 2323468
Alignment:
Q  35 gggccgggccgcccgttttgacagctctaccc 66  Q
    ||||||||||||||||||||||||||||||||    
T  2323499 gggccgggccgcccgttttgacagctctaccc 2323468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 32556312 - 32556351
Alignment:
Q  28 cctaaacgggccgggccgcccgttttgacagctctaccca 67  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  32556312 cctaaacgggccggaccgtccgttttgacagctctaccca 32556351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 65
Target Start/End: Original strand, 4709819 - 4709849
Alignment:
Q  35 gggccgggccgcccgttttgacagctctacc 65  Q
    |||||||||||||||||||||||||||||||    
T  4709819 gggccgggccgcccgttttgacagctctacc 4709849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 19823103 - 19823062
Alignment:
Q  23 ccgggcctaaacgggccgggccgcccgttttgacagctctac 64  Q
    |||| |||||||||| ||| ||||||||||||||||||||||    
T  19823103 ccggccctaaacgggtcggaccgcccgttttgacagctctac 19823062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Original strand, 21808400 - 21808429
Alignment:
Q  35 gggccgggccgcccgttttgacagctctac 64  Q
    ||||||||||||||||||||||||||||||    
T  21808400 gggccgggccgcccgttttgacagctctac 21808429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 41856006 - 41856051
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctctac 64  Q
    |||||||  |||||||||||||| ||||||||||| ||||||||||    
T  41856006 agggccgcccctaaacgggccggaccgcccgttttaacagctctac 41856051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 54134201 - 54134172
Alignment:
Q  34 cgggccgggccgcccgttttgacagctcta 63  Q
    ||||||||||||||||||||||||||||||    
T  54134201 cgggccgggccgcccgttttgacagctcta 54134172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 14815521 - 14815485
Alignment:
Q  30 taaacgggccgggccgcccgttttgacagctctaccc 66  Q
    |||||||||||| || |||||||||||||||||||||    
T  14815521 taaacgggccggaccacccgttttgacagctctaccc 14815485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 31616000 - 31615960
Alignment:
Q  23 ccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||| |||||||||| ||| |||||||||||||||||||||    
T  31616000 ccggtcctaaacgggtcggtccgcccgttttgacagctcta 31615960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 51031751 - 51031779
Alignment:
Q  35 gggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||||||||||||||    
T  51031751 gggccgggccgcccgttttgacagctcta 51031779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 56263882 - 56263854
Alignment:
Q  35 gggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||||||||||||||    
T  56263882 gggccgggccgcccgttttgacagctcta 56263854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 6884289 - 6884246
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  6884289 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 6884246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 43745875 - 43745832
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  43745875 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 43745832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 46312256 - 46312299
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  46312256 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 46312299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 43736672 - 43736716
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctctac 64  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  43736672 gggccgggcttaaacgggccgggccgcccgttttgacagctctac 43736716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 27877929 - 27877972
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  27877929 gggccgggcctaaacgggtcgggccgcccgttttgacagctcta 27877972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 36638697 - 36638741
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||||| |||||||||||||| |||||||||||||||||||||    
T  36638697 agggccggccctaaacgggccggaccgcccgttttgacagctcta 36638741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 48912787 - 48912743
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||||| |||||||||||||||||||||||||||| |||||||    
T  48912787 agggccggccctaaacgggccgggccgcccgttttgatagctcta 48912743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 49507961 - 49508005
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||||| |||| |||||||||||||||||||||||||||||||    
T  49507961 agggccggccctagacgggccgggccgcccgttttgacagctcta 49508005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 29522297 - 29522252
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctctac 64  Q
    |||||||| |||||||||| |||||||||| |||||||||||||||    
T  29522297 agggccggccctaaacgggtcgggccgcccattttgacagctctac 29522252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 3974226 - 3974182
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||||| |||||| ||||||||||||||||||||| |||||||    
T  3974226 agggccggtcctaaatgggccgggccgcccgttttgatagctcta 3974182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 35603323 - 35603283
Alignment:
Q  23 ccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||| ||||||||||| ||||||||||||||||||||||||    
T  35603323 ccggtcctaaacgggctgggccgcccgttttgacagctcta 35603283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 51884807 - 51884763
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||||| |||||||||  |||||||||||||||||||||||||    
T  51884807 agggccggccctaaacggatcgggccgcccgttttgacagctcta 51884763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 1459774 - 1459732
Alignment:
Q  21 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||| |||||||||| ||||||||||||||| |||||||||    
T  1459774 ggccggccctaaacgggtcgggccgcccgttttaacagctcta 1459732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Original strand, 1695592 - 1695621
Alignment:
Q  35 gggccgggccgcccgttttgacagctctac 64  Q
    ||||||||||||||||||||||||||||||    
T  1695592 gggccgggccgcccgttttgacagctctac 1695621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 7909633 - 7909600
Alignment:
Q  35 gggccgggccgcccgttttgacagctctacccac 68  Q
    ||||||||||||||||||||||||||||| ||||    
T  7909633 gggccgggccgcccgttttgacagctctaaccac 7909600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 21075611 - 21075582
Alignment:
Q  34 cgggccgggccgcccgttttgacagctcta 63  Q
    ||||||||||||||||||||||||||||||    
T  21075611 cgggccgggccgcccgttttgacagctcta 21075582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 54312840 - 54312811
Alignment:
Q  35 gggccgggccgcccgttttgacagctctac 64  Q
    ||||||||||||||||||||||||||||||    
T  54312840 gggccgggccgcccgttttgacagctctac 54312811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 3995651 - 3995695
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||||| |||||| ||||||||||| ||||||||| |||||||    
T  3995651 agggccggtcctaaatgggccgggccgtccgttttgatagctcta 3995695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 7400322 - 7400350
Alignment:
Q  35 gggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||||||||||||||    
T  7400322 gggccgggccgcccgttttgacagctcta 7400350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 17518101 - 17518073
Alignment:
Q  35 gggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||||||||||||||    
T  17518101 gggccgggccgcccgttttgacagctcta 17518073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 24570886 - 24570930
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||||  |||||| |||| ||||||||||||||||||||||||    
T  24570886 agggccgaccctaaatgggcggggccgcccgttttgacagctcta 24570930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 28815606 - 28815578
Alignment:
Q  35 gggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||||||||||||||    
T  28815606 gggccgggccgcccgttttgacagctcta 28815578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 33912280 - 33912308
Alignment:
Q  35 gggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||||||||||||||    
T  33912280 gggccgggccgcccgttttgacagctcta 33912308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 49318919 - 49318959
Alignment:
Q  23 ccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    ||||||||||| |||| |||| |||||||||||||||||||    
T  49318919 ccgggcctaaatgggctgggctgcccgttttgacagctcta 49318959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 11369245 - 11369201
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctctac 64  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  11369245 gggccaggcctaaacgggccgggccgcccgttttgacagctctac 11369201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 12075863 - 12075821
Alignment:
Q  21 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  12075863 ggccgggcctaaacggaccgggccgcccgttttgacagctcta 12075821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 12271419 - 12271376
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  12271419 gggccgggcctaaatgggccgggccgcccattttgacagctcta 12271376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 15071206 - 15071249
Alignment:
Q  21 ggccgggcctaaacgggccgggccgcccgttttgacagctctac 64  Q
    ||||| |||||||||| |||||||||||||||||||||||||||    
T  15071206 ggccgagcctaaacggaccgggccgcccgttttgacagctctac 15071249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 26519969 - 26520012
Alignment:
Q  20 gggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||||| |||| ||||||||||||||||||    
T  26519969 gggccgggcctaaacgggccaggccacccgttttgacagctcta 26520012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 31654894 - 31654852
Alignment:
Q  21 ggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    ||||||||| ||||||||||||  |||||||||||||||||||    
T  31654894 ggccgggccgaaacgggccgggtagcccgttttgacagctcta 31654852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 32464907 - 32464861
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctctacc 65  Q
    |||||||| |||||||||| ||||||  |||||||||||||||||||    
T  32464907 agggccggccctaaacgggtcgggccatccgttttgacagctctacc 32464861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Original strand, 10998138 - 10998167
Alignment:
Q  35 gggccgggccgcccgttttgacagctctac 64  Q
    ||||||||||||||||||||||||||||||    
T  10998138 gggccgggccgcccgttttgacagctctac 10998167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 22987653 - 22987624
Alignment:
Q  35 gggccgggccgcccgttttgacagctctac 64  Q
    ||||||||||||||||||||||||||||||    
T  22987653 gggccgggccgcccgttttgacagctctac 22987624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Original strand, 23800741 - 23800770
Alignment:
Q  35 gggccgggccgcccgttttgacagctctac 64  Q
    ||||||||||||||||||||||||||||||    
T  23800741 gggccgggccgcccgttttgacagctctac 23800770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 26554693 - 26554665
Alignment:
Q  35 gggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||||||||||||||    
T  26554693 gggccgggccgcccgttttgacagctcta 26554665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 51810 - 51854
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||||| |||||||||| |||||||||||||||||||||||||    
T  51810 agggccggccctaaacgggtcgggccgcccgttttgacagctcta 51854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0661 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0661
Description:

Target: scaffold0661; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 1065 - 1021
Alignment:
Q  19 agggccgggcctaaacgggccgggccgcccgttttgacagctcta 63  Q
    |||||||| | ||||||||| |||||||||||||||||| |||||    
T  1065 agggccggccataaacgggctgggccgcccgttttgacaactcta 1021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0486 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0486
Description:

Target: scaffold0486; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 205 - 233
Alignment:
Q  35 gggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||||||||||||||    
T  205 gggccgggccgcccgttttgacagctcta 233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 26165 - 26137
Alignment:
Q  35 gggccgggccgcccgttttgacagctcta 63  Q
    |||||||||||||||||||||||||||||    
T  26165 gggccgggccgcccgttttgacagctcta 26137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 24190 - 24226
Alignment:
Q  30 taaacgggccgggccgcccgttttgacagctctaccc 66  Q
    |||||||||||| || |||||||||||||||||||||    
T  24190 taaacgggccggaccacccgttttgacagctctaccc 24226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University