View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4598-Insertion-10 (Length: 227)
Name: NF4598-Insertion-10
Description: NF4598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4598-Insertion-10 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 26369141 - 26369360
Alignment:
| Q |
8 |
caatacacaacaatagatgacattaagggccagtttaggaagaggttttcatctttttggattatcttgtctttgcctgctttcccatttcttccagttt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26369141 |
caatacacaacaatagatgacattaagggccagtttaggaagaggttttcatctttttggattatcttgtctttgcctgctttcccatttcttccagttt |
26369240 |
T |
|
| Q |
108 |
ctaaagcctcagcaccatcaatggactcattgctaagagggtggttgtgtaatgtttcctgcagtcgagcaggtatgcatttataaaaactgtattgatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26369241 |
ctaaagcctcagcaccatcaatggactcattgctaagagggtggttgtgtaatgtttcctgcagtcgagcaggtatgcatttataaaaactgtattgatt |
26369340 |
T |
|
| Q |
208 |
gtaaagtaaagagaaatata |
227 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
26369341 |
gtaaagtaaagagaaatata |
26369360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 2608291 - 2608073
Alignment:
| Q |
8 |
caatacacaacaatagatgacattaagggccagtttaggaagaggttttcatctttttggattatcttgtctttgcctgctttcccatttcttccagttt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
2608291 |
caatacacaacaatagatgacattaagggccagtttaggaagaggttttcatctttttggattatcttgtttttgcctgctctcccatttcttccagttt |
2608192 |
T |
|
| Q |
108 |
ctaaagcctcagcaccatcaatggactcattgctaagagggtggttgtgtaatgtttcctgcagtcgagcaggtatgcatttataaaaactgtattgatt |
207 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| ||| | ||||||| |
|
|
| T |
2608191 |
ctaaagcttcagcatcatcaatggactcattgctaagagggtggttgtgtaatgtttcctacagtcggacaggcatgcatttatagaaattatattgatg |
2608092 |
T |
|
| Q |
208 |
gtaaagtaaagagaaatat |
226 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2608091 |
gtaaagtaaagagaaatat |
2608073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 2622636 - 2622571
Alignment:
| Q |
4 |
aacacaatacacaacaatagatgacattaagggccagtttaggaagaggttttcatctttttggat |
69 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||| ||| | |||| |||||||||||||||| |
|
|
| T |
2622636 |
aacacaataaacaataatagatgacattaagggccaattttttaggaggctttcatctttttggat |
2622571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University