View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4598-Insertion-11 (Length: 129)
Name: NF4598-Insertion-11
Description: NF4598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4598-Insertion-11 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 3e-58; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 2892447 - 2892330
Alignment:
| Q |
12 |
ggacacacatcacacaatgggatttgattcaatacaagaagaaagctgctgctgctactgctgatgaatatgatggtaatactattctcaaatacaatta |
111 |
Q |
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| T |
2892447 |
ggacacacatcacacaatgggatttgattcaatacaagaagaaagctgctgctcctactgctgatgaatatgatggtaatactattctcaaatacaatta |
2892348 |
T |
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| Q |
112 |
attagatgaaggttttta |
129 |
Q |
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| T |
2892347 |
attagatgaaggttttta |
2892330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 3158137 - 3158257
Alignment:
| Q |
9 |
tagggacacacatcacacaatgggatttgattcaatacaagaagaaagctgctgctgctactgctgatgaatatgatggtaatactattctcaaatacaa |
108 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3158137 |
tagggacccacatcacacaatgggatttgattcaatacaagaagaaagctgctgctcctactgctgatgaatatgatggtaatactattctcaaatacaa |
3158236 |
T |
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| Q |
109 |
ttaattagatgaaggttttta |
129 |
Q |
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| T |
3158237 |
ttaattagatgaaggttttta |
3158257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 2878058 - 2877933
Alignment:
| Q |
8 |
atagggacacacatcacacaatgggatttgattcaatacaagaagaaagctgctgctgctactgctgatgaatatgatggtaatacta-----ttctcaa |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||| ||||||| |
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| T |
2878058 |
atagggacacacatcacacaatgggatttgattcaatacaagaagaaagctgctgctccttctgctgaagaatatgatggtaatactattctattctcaa |
2877959 |
T |
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| Q |
103 |
atacaattaattagatgaaggttttt |
128 |
Q |
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| T |
2877958 |
atacaattaattaggttaaggttttt |
2877933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 2793793 - 2793829
Alignment:
| Q |
93 |
ctattctcaaatacaattaattagatgaaggttttta |
129 |
Q |
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| T |
2793793 |
ctattctcaaatacaattaattagattaaggttttta |
2793829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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