View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4598-Insertion-12 (Length: 128)
Name: NF4598-Insertion-12
Description: NF4598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4598-Insertion-12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 3e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 3e-64
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 18779824 - 18779701
Alignment:
| Q |
5 |
acaattgattgacaactttgctacttgcacttccaatctattaatgagtgtttcgatcttgtcactaatgtgtttgttgcttcctagtaaggtatcatgt |
104 |
Q |
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| T |
18779824 |
acaattgattgacaactttgctacttgcacttccaatctattaatgagtgtttcgatcttgtcactaatgtgtttgttgcttcctagtaaggtatcatgt |
18779725 |
T |
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| Q |
105 |
gtttccagacgtagaactatctgt |
128 |
Q |
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| T |
18779724 |
gtttccagacgtagaactatctgt |
18779701 |
T |
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Target: chr3 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 19292400 - 19292337
Alignment:
| Q |
59 |
gatcttgtcactaatgtgtttgttgcttcctagtaaggtatcatgtgtttccagacgtagaact |
122 |
Q |
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| T |
19292400 |
gatcttgtcactaagaagtttgttgctttttagtaaggcatcatgtgtttgcaaacatagaact |
19292337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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