View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4598-Insertion-2 (Length: 769)
Name: NF4598-Insertion-2
Description: NF4598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4598-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 7 - 435
Target Start/End: Original strand, 36166912 - 36167340
Alignment:
| Q |
7 |
aggaagaacctaaagcgagtaatcccctcccataatggaccaacattctaaaaaacctcatcacttctattcctccaaaactcccaacaaatagctataa |
106 |
Q |
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| T |
36166912 |
aggaagaacctaaagcgagtaatcccctcccataatggaccaacattctaaaaaacctcatcacttctattcctccaaaactcccaacaaatagctataa |
36167011 |
T |
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| Q |
107 |
agatagaacctaatgtcgccatagtatgatattcgaaccatagagaaatcatttggataagtgaaacaacttgtaatttgagagttgagacagagagaat |
206 |
Q |
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| T |
36167012 |
agatagaacctaatttcgccatagcatgatattcgaaccatagagaaatcatttggataagtgaaacaacttgtaatttgagagttgagacagagagaat |
36167111 |
T |
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| Q |
207 |
aattattgatggagaaaaacattcaactatccactatccgagctctatatgttggataaaactaacattaatgcgtatgaaaaaggctacattatacttt |
306 |
Q |
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| T |
36167112 |
aattattgatggagaaaaacattcaactatccactatccgagctctatatgttggataaaactaacattaatgcgtatgaaaaaggctacattatacttt |
36167211 |
T |
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| Q |
307 |
ggattcatatattcattccttccctcttgactttgaatttgaaatccatgcactttcggtaaaatgcgtatgaaaaaggctacattatacatttggatac |
406 |
Q |
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| T |
36167212 |
ggattcatatattcattccttccctcttgactttgaatgtgaaatccatgcactttcggtaaaatgcgtatgaaaaaggctacattatacatttggatac |
36167311 |
T |
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| Q |
407 |
ctgcacgtaaactaatgcctgcatcaata |
435 |
Q |
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| T |
36167312 |
ctgcacgtaaactaatgcctgcatcaata |
36167340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 456 - 768
Target Start/End: Original strand, 36167366 - 36167661
Alignment:
| Q |
456 |
atgatatggggcaatgactattctagagaggaatgatgatgtgtgccatctgccatgttttgaatttctcatcacgggatttgaaagtctatatgtaact |
555 |
Q |
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| T |
36167366 |
atgatatggggcaatgactattctagagaggaatgatgatgtgtgccatctgccatgttttgaatttctcatcacgggatttgaaagtctatatttaact |
36167465 |
T |
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| Q |
556 |
aatttaaatataacacgtttatttccgaaannnnnnnaaaaaggaaaatgaaacgattatttttatatattttagtgacatgcaaccggtatggacagat |
655 |
Q |
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| T |
36167466 |
aatttaaatataacacgttta-----------------aaaaggaaaatgaaacgattatttttatatattttagtgacatgcaaccggtatggacagat |
36167548 |
T |
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| Q |
656 |
attttgagagattcaccacaaaaaagaaagatattttgagagattgagtatgatttattaggtgagggaacatggaaacatttcaccatgctaccacgaa |
755 |
Q |
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| T |
36167549 |
attttgagagattcaccacaaaaaagaaagatattttgagagattgagcatgatttattaggtgggggaacatggaaacatttcaccatgctaccacgaa |
36167648 |
T |
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