View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4598-Insertion-3 (Length: 711)
Name: NF4598-Insertion-3
Description: NF4598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4598-Insertion-3 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 322 - 711
Target Start/End: Original strand, 5822787 - 5823175
Alignment:
| Q |
322 |
gtagagctcattactcacttgaactgaatcacttagttattttcttatatcatgtattggtcttgggaagtaannnnnnnnnnattctcattgactttga |
421 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5822787 |
gtagagctcattacccacttgaactgaatcacttagttattttcttatatcatgtattggtcttgggaagtaaatttttttttattctcattgactttga |
5822886 |
T |
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| Q |
422 |
caaatgtaagtgatgatggtaaataaaatagtagcattaacaaacaattgttaccttctccagcagccaaattgaagaaaaggtcaacaatattgggaca |
521 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5822887 |
caaatgtatgtgatgatggtaaataaaatagt-gcattaacaaacaattgttaccttctccagcagccaaattaaagaaaaggtcaacaatattgggaca |
5822985 |
T |
|
| Q |
522 |
cttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgct |
621 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5822986 |
cttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgct |
5823085 |
T |
|
| Q |
622 |
tccacacattggtctgtctctatgtatgctgctattctctccaccataacttcagatgttcgacattgatactcggtttcaccattgata |
711 |
Q |
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|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5823086 |
tctacacattcgtctgtctctatgtatgctgctattctctccaccataacttcagatgttcggcattgatactcggtttcaccattgata |
5823175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 326 - 711
Target Start/End: Complemental strand, 5829088 - 5828702
Alignment:
| Q |
326 |
agctcattactcacttgaactgaatcacttagttattttcttatatcatgtattggtcttgggaagtaannnnnnnnnn--attctcattgactttgaca |
423 |
Q |
| |
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|||||||||| ||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| |
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| T |
5829088 |
agctcattaccaacttgaactgaatcagttaattattttcttatatcatgtatttgtcttgggaagtaaaatattttttttattcacattgactttgaca |
5828989 |
T |
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| Q |
424 |
aatgtaagtgatgatggtaaataaaatagtagcattaacaaacaattgttaccttctccagcagccaaattgaagaaaaggtcaacaatattgggacact |
523 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5828988 |
aatgtatgtgatgatggtaaataaaatagt-gcattaacaaacaagtcttaccttctccagcagccaaattaaagaaaaggtcaacaatattgggacact |
5828890 |
T |
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| Q |
524 |
tagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttc |
623 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5828889 |
tagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttc |
5828790 |
T |
|
| Q |
624 |
cacacattggtctgtctctatgtatgctgctattctctccaccataacttcagatgttcgacattgatactcggtttcaccattgata |
711 |
Q |
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| T |
5828789 |
cacacattgatctgtctctatgtatgctgctattctctccaccataacttcagatgttcggcattgatactcggtttcaccattgata |
5828702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 5829387 - 5829163
Alignment:
| Q |
19 |
tcctctgaaatctcagaaataggtgcagctgcaggtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagtt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5829387 |
tcctctgaaatctcagaaataggtgcagctgcaggtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagtt |
5829288 |
T |
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| Q |
119 |
cgatagtagcacgacgaggattggtcttgtgtttctcacaaagttccggcaaaaatactcctgttgtcacattaatgcagcttagttatcatatataaca |
218 |
Q |
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| T |
5829287 |
caattgtagcacgacgagggttggtcttgtgtttctcacaaagttccggcaaaaatactcctgttgtcacattaatgcagcttagttatcgtatataaca |
5829188 |
T |
|
| Q |
219 |
aaac-aaaagagttaaaaccatact |
242 |
Q |
| |
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|||| |||||||||||||||||||| |
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| T |
5829187 |
aaacaaaaagagttaaaaccatact |
5829163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 5822521 - 5822690
Alignment:
| Q |
38 |
taggtgcagctgcaggtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagttcgatagtagcacgacgagg |
137 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
5822521 |
taggtgcagatgctggtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagttcaattgtagcacgacgagg |
5822620 |
T |
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| Q |
138 |
attggtcttgtgtttctcacaaagttccggcaaaaatactcctgttgtcacattaatgcagcttagttat |
207 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
5822621 |
gttgttcttgtgtttctcacaaagttccggcaaaaatactcctagagtcacatgaatgcagcttagttat |
5822690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 472 - 709
Target Start/End: Original strand, 5832814 - 5833051
Alignment:
| Q |
472 |
ttaccttctccagcagccaaattgaagaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaa |
571 |
Q |
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||||| ||||||||||||| ||||||||||||||||||||| || || ||||| | |||||| ||| || ||||| |||| ||||| | ||||||| |
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| T |
5832814 |
ttaccctctccagcagccatattgaagaaaaggtcaacaatgttagggcactttttgtaacaagctggtgagcaaagtttgccggtgaattgtggctcaa |
5832913 |
T |
|
| Q |
572 |
agaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattggtctgtctctatgtatgctgctattctctccaccataac |
671 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| ||||| |
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| T |
5832914 |
agaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattgatctgtctctatgtactctgaaattctctccactataac |
5833013 |
T |
|
| Q |
672 |
ttcagatgttcgacattgatactcggtttcaccattga |
709 |
Q |
| |
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||||||||||| |||||||||||| |||||||||||| |
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| T |
5833014 |
ttcagatgttctacattgatactcaatttcaccattga |
5833051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 39 - 190
Target Start/End: Original strand, 5831980 - 5832131
Alignment:
| Q |
39 |
aggtgcagctgcaggtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagttcgatagtagcacgacgagga |
138 |
Q |
| |
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|||||||||||||||||||||| |||| |||| ||||| || ||||| || |||| ||||||||| ||||| ||| |||| ||||||||||||| |
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| T |
5831980 |
aggtgcagctgcaggtgctaacacaatgtcctctgaaactgaagaagccgggccaaatgcagctccggagctcacaagctcgaccatagcacgacgaggg |
5832079 |
T |
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| Q |
139 |
ttggtcttgtgtttctcacaaagttccggcaaaaatactcctgttgtcacat |
190 |
Q |
| |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
5832080 |
ttggtcttgtgtttctcacatagttctggcaaaaatactcctgttgtcacat |
5832131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 472 - 696
Target Start/End: Original strand, 24038434 - 24038658
Alignment:
| Q |
472 |
ttaccttctccagcagccaaattgaagaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaa |
571 |
Q |
| |
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|||||||| |||||||||||||||||| ||||||||||||||||||| || || | ||||||||| |||||||| ||| |||||| | ||||||| |
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| T |
24038434 |
ttaccttccccagcagccaaattgaagtaaaggtcaacaatattggggcaattttggtaacaagatgatgaacaaagtttggctgtgaattgtggctcaa |
24038533 |
T |
|
| Q |
572 |
agaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattggtctgtctctatgtatgctgctattctctccaccataac |
671 |
Q |
| |
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|| ||||| || ||||| || ||| || | || ||||| |||||||||| ||||||||| ||||||||||||||| | || |||| ||||| || || |
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| T |
24038534 |
gcaatgcatcggaagaaattccgacaaaattcctttcaactccacatgctttcacacattgatctgtctctatgtatcccgccattcgctccaacactac |
24038633 |
T |
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| Q |
672 |
ttcagatgttcgacattgatactcg |
696 |
Q |
| |
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||| ||||| | ||||||||||||| |
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| T |
24038634 |
ttctgatgtcctacattgatactcg |
24038658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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