View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4598-Insertion-4 (Length: 674)
Name: NF4598-Insertion-4
Description: NF4598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4598-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 6 - 458
Target Start/End: Original strand, 35466965 - 35467416
Alignment:
| Q |
6 |
cattaattttaatagagagaaagnnnnnnntgtcggcaactgcatacaaagaatcctacatagctactaaatggaatttcgaggttaagtaaaacatatc |
105 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35466965 |
cattaattttaatagagagaaagaaaaaaatgtcggcaactgcatacaaagaatcctacatagctactaaatggaatttcgaggttaagtaaaacatatc |
35467064 |
T |
|
| Q |
106 |
atcaatgtaagtcatcttctcaactaagcttatgccccctagtcttttcttttatgtgaaaaatatcatcgatgcaaagtcatctcaactaaattgacac |
205 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
35467065 |
atcaatgtaagtcatcttctcaactaagcttatgccccctagtcttttcttttatgtgaaaaatatcatcgatgc-aagtcatctcaactaagttgacac |
35467163 |
T |
|
| Q |
206 |
taaatacactaataggtttttgtggcaccaatatattaaataataaaaatgagagaatgaac-aaaatccgcaagaccaaaccaaaacccgctgaaagta |
304 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||| |
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| T |
35467164 |
taaatacactaataggtttttgtggcatcaatatattaaataataaaaatgagagaatgaacaaaaatacgcaagaccaaatcaaaacccgctgaaagta |
35467263 |
T |
|
| Q |
305 |
tttaaatctaaaatattccaaagttttgggttgggtcacagaaaagatactgtaattggtaaatttcaatatgcagatcatctaaatgatttttcttctt |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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|
| T |
35467264 |
tttaaatctaaaatattccaaagttttgggttgggtcactg-aaagatactgtaattggtaaatttcaatatgccgatcatttaaatgatttttcttctt |
35467362 |
T |
|
| Q |
405 |
acaacatttcttttgaagtacatttaagtaattgtgttgaagaaagacttttag |
458 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
35467363 |
acaacacttcttttgaagtacatttaagtaattgtgttgaagaaagtcttttag |
35467416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 589 - 639
Target Start/End: Original strand, 35468301 - 35468351
Alignment:
| Q |
589 |
tgtgtttaattttaaaaagacaaaaatatccttgcatttaaatttgattga |
639 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35468301 |
tgtgtttaattttaaaaagacaaaaatatccttgcatttaaatttgattga |
35468351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 589 - 639
Target Start/End: Original strand, 11523245 - 11523295
Alignment:
| Q |
589 |
tgtgtttaattttaaaaagacaaaaatatccttgcatttaaatttgattga |
639 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11523245 |
tgtgtttaattttaaaaagacaaaaatatccttgcatttaaatttgattga |
11523295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 589 - 639
Target Start/End: Original strand, 41318544 - 41318595
Alignment:
| Q |
589 |
tgtgttta-attttaaaaagacaaaaatatccttgcatttaaatttgattga |
639 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41318544 |
tgtgtttatattttaaaaagacaaaaatatccttgcatttaaaattgattga |
41318595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 589 - 639
Target Start/End: Original strand, 47820153 - 47820204
Alignment:
| Q |
589 |
tgtgttta-attttaaaaagacaaaaatatccttgcatttaaatttgattga |
639 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
47820153 |
tgtgtttagattttaaaaagacaaaaatatccttgcatttaaaattgattga |
47820204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 589 - 639
Target Start/End: Original strand, 27899104 - 27899154
Alignment:
| Q |
589 |
tgtgtttaattttaaaaagacaaaaatatccttgcatttaaatttgattga |
639 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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|
| T |
27899104 |
tgtgtttaattttaaaaagacaaaaatatctttgcatttaattttgattga |
27899154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 589 - 637
Target Start/End: Original strand, 18603923 - 18603972
Alignment:
| Q |
589 |
tgtgttta-attttaaaaagacaaaaatatccttgcatttaaatttgatt |
637 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
18603923 |
tgtgtttagattttaaaaagacaaaaatatccttgcatttaaaattgatt |
18603972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 589 - 637
Target Start/End: Complemental strand, 42561846 - 42561797
Alignment:
| Q |
589 |
tgtgttta-attttaaaaagacaaaaatatccttgcatttaaatttgatt |
637 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
42561846 |
tgtgtttagattttaaaaagacaaaaatatccttgcatttaaaattgatt |
42561797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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