View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4598-Insertion-6 (Length: 505)

Name: NF4598-Insertion-6
Description: NF4598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4598-Insertion-6
NF4598-Insertion-6
[»] chr4 (1 HSPs)
chr4 (8-505)||(46942749-46943253)


Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 8 - 505
Target Start/End: Complemental strand, 46943253 - 46942749
Alignment:
Q  8 atatgagtggtgatactatgtagaagatacgcaggctgagannnnnnngcttgatattatgattattccctctaataatgttgttgaagccgctaatttc 107  Q
    ||||||||| ||||||||||||||||||||||| ||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46943253 atatgagtgatgatactatgtagaagatacgcaagctgagcattttttgcttgatattatgattattccctctaataatgttgttgaagccgctaatttc 46943154  T
Q  108 aaaaggtctgtcaatagtgtatatttatacgcattggtagtcattaacaagtgtcctaaggcacttgttcccacggagacatactcatgtaatataacaa 207  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  46943153 aaaaggtctgtcaatagtgtatatttatacgcataggtagtcgttaacaagtgtcctaaggcacttgtttccacggagacatactcatataatataacaa 46943054  T
Q  208 tcggcagtcgatataattatctacacatcgcacgggcaggaaactagtgaaacacaaaatgattatgtttcaagtctctttagttac----attactggt 303  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    |||||||||    
T  46943053 tcggcagttgatataattatctacacatcgcaggggcaggaaactagtgaaacacaaaattattatgtttcaagtctctttagttacatatattactggt 46942954  T
Q  304 atctactattggttgttatcaaaatcaaaataaaatcctaac---nnnnnnnngagagagagacggagtaactcttcacaatcacatcttaaaaatttat 400  Q
    ||||||||| |||||||||||||||||||||||||| |||||           |||||||||||||||||||||||||||||||||||||||||||||||    
T  46942953 atctactatcggttgttatcaaaatcaaaataaaattctaacaaaaaaagagagagagagagacggagtaactcttcacaatcacatcttaaaaatttat 46942854  T
Q  401 gttgatgttgaatgaaagatgttcatgcacatgatccaaagccatttttgtatgctttctttctattttctgggccagatcatttttccacataagacaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46942853 gttgatgttgaatgaaagatgttcatgcacatgatccaaagccatttctgtatgctttctttctattttctgggccagatcatttttccacataagacaa 46942754  T
Q  501 tgtta 505  Q
    |||||    
T  46942753 tgtta 46942749  T

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