View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4598-Insertion-8 (Length: 454)

Name: NF4598-Insertion-8
Description: NF4598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4598-Insertion-8
NF4598-Insertion-8
[»] chr7 (5 HSPs)
chr7 (149-450)||(13063777-13064078)
chr7 (151-450)||(44362390-44362689)
chr7 (223-315)||(45854601-45854693)
chr7 (253-318)||(26159304-26159369)
chr7 (159-207)||(39464518-39464566)
[»] chr2 (3 HSPs)
chr2 (149-450)||(37598968-37599269)
chr2 (158-450)||(24220753-24221045)
chr2 (222-333)||(5539479-5539590)
[»] chr8 (2 HSPs)
chr8 (151-450)||(20129382-20129681)
chr8 (159-207)||(5513308-5513356)
[»] chr1 (2 HSPs)
chr1 (159-450)||(46781268-46781558)
chr1 (223-315)||(45814296-45814388)
[»] chr6 (4 HSPs)
chr6 (244-450)||(14676022-14676228)
chr6 (8-149)||(11406102-11406243)
chr6 (159-431)||(9312729-9313001)
chr6 (162-376)||(13215358-13215572)
[»] chr5 (4 HSPs)
chr5 (151-448)||(35076985-35077281)
chr5 (8-149)||(35067296-35067437)
chr5 (159-431)||(39365677-39365949)
chr5 (253-318)||(34423979-34424044)
[»] chr4 (2 HSPs)
chr4 (169-426)||(46218826-46219083)
chr4 (255-319)||(18991679-18991743)
[»] chr3 (1 HSPs)
chr3 (273-333)||(12950112-12950172)


Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 149 - 450
Target Start/End: Original strand, 13063777 - 13064078
Alignment:
Q  149 tgctcatcggtattcggtgcggggagcttaccgctttctcactaattcaggtgagttggtgaatcggacattagttgaagacatttggcataagctaatt 248  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  13063777 tgctcatgggtattcggtgcggggagcttaccgctttctcactaattcaggtgagttggtggatcggacattagttgaagacatttggcataagcaaatt 13063876  T
Q  249 cccgcaaaggtgtctctgatggtctggcgacttcttcgtgacagacttcccactaaagacaacttggtgcagcgacgtgttcttcctattggtggtgcgg 348  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||    
T  13063877 cccgcaaaggtgtctctgatggtttggcgacttcttcgtgacagacttcccactaaagacaacttggtgaggcgacgtgttcttcctattggtggtgtgg 13063976  T
Q  349 cttgtgtatcaggatgtgggcaattggaaacaacatctcatttgtttgtatcttgtaacgtttttggttctctttggtttcatatatggtcttggctggg 448  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  13063977 cttgtgtatcaggttgtgggcaattggaaacaacatctcatttgtttgtatcttgtaacatttttggttctctttggtttcatgtatggtcttggctggg 13064076  T
Q  449 ta 450  Q
    ||    
T  13064077 ta 13064078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 151 - 450
Target Start/End: Complemental strand, 44362689 - 44362390
Alignment:
Q  151 ctcatcggtattcggtgcggggagcttaccgctttctcactaattcaggtgagttggtgaatcggacattagttgaagacatttggcataagctaattcc 250  Q
    ||||| |||||||||||||||||||||||||||||||||||| || ||| ||||||||| ||||||| |||||||| |||||||||||||||| ||||||    
T  44362689 ctcatgggtattcggtgcggggagcttaccgctttctcactacttaaggcgagttggtggatcggacgttagttgacgacatttggcataagcaaattcc 44362590  T
Q  251 cgcaaaggtgtctctgatggtctggcgacttcttcgtgacagacttcccactaaagacaacttggtgcagcgacgtgttcttcctattggtggtgcggct 350  Q
    | |||||| |||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||| ||    
T  44362589 ctcaaaggcgtctctgatggtttggcgccttcttcgcgacagacttcccactaaagacaacttggtgaggcgacgtgttcttcctattgatggtgcgact 44362490  T
Q  351 tgtgtatcaggatgtgggcaattggaaacaacatctcatttgtttgtatcttgtaacgtttttggttctctttggtttcatatatggtcttggctgggta 450  Q
    ||||||||||| |||||||| ||||||||| ||||||||||||||||| |||||||| ||||| | ||| ||||||||||| ||||||||||||||||||    
T  44362489 tgtgtatcaggttgtgggcagttggaaacatcatctcatttgtttgtaacttgtaacatttttagctctatttggtttcatgtatggtcttggctgggta 44362390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 315
Target Start/End: Complemental strand, 45854693 - 45854601
Alignment:
Q  223 ttgaagacatttggcataagctaattcccgcaaaggtgtctctgatggtctggcgacttcttcgtgacagacttcccactaaagacaacttgg 315  Q
    |||| |||||||||||||||   |||||  ||||||| ||| ||||||| ||||| ||||| ||  |||||||||| ||||||||||||||||    
T  45854693 ttgatgacatttggcataagtagattccttcaaaggtctctttgatggtgtggcgtcttctccgaaacagacttccgactaaagacaacttgg 45854601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 26159304 - 26159369
Alignment:
Q  253 caaaggtgtctctgatggtctggcgacttcttcgtgacagacttcccactaaagacaacttggtgc 318  Q
    |||||||||||||| | || |||||  |||||||| |||||||||| |||||||| || |||||||    
T  26159304 caaaggtgtctctgtttgtgtggcgcgttcttcgtaacagacttcctactaaagataatttggtgc 26159369  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 39464566 - 39464518
Alignment:
Q  159 tattcggtgcggggagcttaccgctttctcactaattcaggtgagttgg 207  Q
    |||||||||||||  ||||||||||||||||| | ||||| ||||||||    
T  39464566 tattcggtgcgggtggcttaccgctttctcacaacttcagttgagttgg 39464518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 149 - 450
Target Start/End: Original strand, 37598968 - 37599269
Alignment:
Q  149 tgctcatcggtattcggtgcggggagcttaccgctttctcactaattcaggtgagttggtgaatcggacattagttgaagacatttggcataagctaatt 248  Q
    ||||||| |||||||||||||||||||||||||||||||||| | |||||| ||||||||| ||||||| |||||||| || ||||| ||||||| ||||    
T  37598968 tgctcatgggtattcggtgcggggagcttaccgctttctcaccagttcaggcgagttggtggatcggacgttagttgacgatatttgacataagcaaatt 37599067  T
Q  249 cccgcaaaggtgtctctgatggtctggcgacttcttcgtgacagacttcccactaaagacaacttggtgcagcgacgtgttcttcctattggtggtgcgg 348  Q
    ||| ||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||  ||||||||    
T  37599068 ccctcaaaggtgtctctgatggtttggcgccttcttcgcgacagacttcccactaaagacaacttggtgaggcgacgtgttcttcctatttatggtgcgg 37599167  T
Q  349 cttgtgtatcaggatgtgggcaattggaaacaacatctcatttgtttgtatcttgtaacgtttttggttctctttggtttcatatatggtcttggctggg 448  Q
    |||||||||| || |||||||| |||||||||||| ||||||||||||||||||||||| ||||| | ||||||||||||||| ||||||||||||||||    
T  37599168 cttgtgtatctggttgtgggcagttggaaacaacacctcatttgtttgtatcttgtaacatttttagctctctttggtttcatgtatggtcttggctggg 37599267  T
Q  449 ta 450  Q
    ||    
T  37599268 ta 37599269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 158 - 450
Target Start/End: Original strand, 24220753 - 24221045
Alignment:
Q  158 gtattcggtgcggggagcttaccgctttctcactaattcaggtgagttggtgaatcggacattagttgaagacatttggcataagctaattcccgcaaag 257  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| |||||||| |||||||||| ||||| ||||||| |||||    
T  24220753 gtattcggtgcggggagcttaccgctttctcactaattcaggcgagtttgtggatcggacgttagttgacgacatttggcttaagcaaattccctcaaag 24220852  T
Q  258 gtgtctctgatggtctggcgacttcttcgtgacagacttcccactaaagacaacttggtgcagcgacgtgttcttcctattggtggtgcggcttgtgtat 357  Q
    |||||| ||||||| || || |||||||| ||||||||||||||||||||||||||||||  ||||| |||||||| ||||| ||||||| |||||||||    
T  24220853 gtgtctatgatggtttgacgccttcttcgcgacagacttcccactaaagacaacttggtgaggcgacatgttcttcatattgatggtgcgacttgtgtat 24220952  T
Q  358 caggatgtgggcaattggaaacaacatctcatttgtttgtatcttgtaacgtttttggttctctttggtttcatatatggtcttggctgggta 450  Q
    |||| |||||||| |||||||||||||| |||||||||||| |||||||| ||||| | ||||||| ||||||| ||||||||||||||||||    
T  24220953 caggttgtgggcatttggaaacaacatcccatttgtttgtaacttgtaacatttttagctctctttagtttcatgtatggtcttggctgggta 24221045  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 333
Target Start/End: Original strand, 5539479 - 5539590
Alignment:
Q  222 gttgaagacatttggcataagctaattcccgcaaaggtgtctctgatggtctggcgacttcttcgtgacagacttcccactaaagacaacttggtgcagc 321  Q
    ||||| ||||| ||||||||||  |||||  |||||||||||||| | || ||||| || || ||  |||||||||| ||||||||||| ||||||| ||    
T  5539479 gttgacgacatctggcataagcatattccttcaaaggtgtctctgtttgtgtggcgcctcctacgcaacagacttcctactaaagacaatttggtgcggc 5539578  T
Q  322 gacgtgttcttc 333  Q
    |  |||||||||    
T  5539579 ggagtgttcttc 5539590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 151 - 450
Target Start/End: Original strand, 20129382 - 20129681
Alignment:
Q  151 ctcatcggtattcggtgcggggagcttaccgctttctcactaattcaggtgagttggtgaatcggacattagttgaagacatttggcataagctaattcc 250  Q
    ||||| |||||||||||||||||||||||||||||||||||| || ||| ||||||||| ||||||| |||||||| |||||||||||||||| ||||||    
T  20129382 ctcatgggtattcggtgcggggagcttaccgctttctcactacttaaggcgagttggtggatcggacgttagttgacgacatttggcataagcaaattcc 20129481  T
Q  251 cgcaaaggtgtctctgatggtctggcgacttcttcgtgacagacttcccactaaagacaacttggtgcagcgacgtgttcttcctattggtggtgcggct 350  Q
    | |||||| |||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||| ||    
T  20129482 ctcaaaggcgtctctgatggtttggcgccttcttcgcgacagacttcccactaaagacaacttggtgaggcgacgtgttcttcctattgatggtgcgact 20129581  T
Q  351 tgtgtatcaggatgtgggcaattggaaacaacatctcatttgtttgtatcttgtaacgtttttggttctctttggtttcatatatggtcttggctgggta 450  Q
    ||||||||||| |||||||| ||||||||| ||||||||||||||||| |||||||| ||||| | ||| ||||||||||| ||||||||||||||||||    
T  20129582 tgtgtatcaggttgtgggcagttggaaacatcatctcatttgtttgtaacttgtaacatttttagctctatttggtttcatgtatggtcttggctgggta 20129681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 5513308 - 5513356
Alignment:
Q  159 tattcggtgcggggagcttaccgctttctcactaattcaggtgagttgg 207  Q
    ||||| |||||||  ||||||||||||||||| | ||||||||||||||    
T  5513308 tattcagtgcgggtggcttaccgctttctcacaacttcaggtgagttgg 5513356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 159 - 450
Target Start/End: Original strand, 46781268 - 46781558
Alignment:
Q  159 tattcggtgcggggagcttaccgctttctcactaattcaggtgagttggtgaatcggacattagttgaagacatttggcataagctaattcccgcaaagg 258  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||| |||||||| |||||||||||||||  ||||||| ||||||    
T  46781268 tattcggtgcggggagcttaccgctttctcactacttcaggcgagttggtggatcggacgttagttgacgacatttggcataagaaaattccctcaaagg 46781367  T
Q  259 tgtctctgatggtctggcgacttcttcgtgacagacttcccactaaagacaacttggtgcagcgacgtgttcttcctattggtggtgcggcttgtgtatc 358  Q
    |||| |||||||| |||||  |||||||   ||||||||||||||||||||||||||||  ||||||||||||||| |||| ||||||||||||||||||    
T  46781368 tgtccctgatggtttggcgctttcttcgcagcagacttcccactaaagacaacttggtgaggcgacgtgttcttcc-attgatggtgcggcttgtgtatc 46781466  T
Q  359 aggatgtgggcaattggaaacaacatctcatttgtttgtatcttgtaacgtttttggttctctttggtttcatatatggtcttggctgggta 450  Q
    ||| |||||||| |||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||||||||||||||||||    
T  46781467 aggttgtgggcagttggaaacaacatctcatttgtttgtatcttgtaacatttttagctctctttggtttcatgtatggtcttggctgggta 46781558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 315
Target Start/End: Complemental strand, 45814388 - 45814296
Alignment:
Q  223 ttgaagacatttggcataagctaattcccgcaaaggtgtctctgatggtctggcgacttcttcgtgacagacttcccactaaagacaacttgg 315  Q
    |||| ||| |||||||||||| ||||||  ||||||| ||| ||||||| ||||  ||||| ||  |||||||||| ||||||||||||||||    
T  45814388 ttgatgacgtttggcataagcaaattccttcaaaggtctctttgatggtgtggcatcttctccgaaacagacttccgactaaagacaacttgg 45814296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 163; Significance: 7e-87; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 244 - 450
Target Start/End: Original strand, 14676022 - 14676228
Alignment:
Q  244 taattcccgcaaaggtgtctctgatggtctggcgacttcttcgtgacagacttcccactaaagacaacttggtgcagcgacgtgttcttcctattggtgg 343  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||  ||| ||||||||||||||||||||    
T  14676022 taattcccgcaaaggtgtctctgatggtttggcgacttcttcgtgacagacttcccaataaagacaacttggtgaggcgtcgtgttcttcctattggtgg 14676121  T
Q  344 tgcggcttgtgtatcaggatgtgggcaattggaaacaacatctcatttgtttgtatcttgtaacgtttttggttctctttggtttcatatatggtcttgg 443  Q
    |||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||| ||||    
T  14676122 tgcggcttgtgtatcaggttgtgggcaattggaaacagcatctcaattgtttgtatcttgtaacatttttggttctctttggtttcatgtatggtattgg 14676221  T
Q  444 ctgggta 450  Q
    |||||||    
T  14676222 ctgggta 14676228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 11406102 - 11406243
Alignment:
Q  8 tgtcctactttaattctttgactatatttgtaattgttacttaattgtttgtttattatttttaagatattctttgtaatttatgaagcaagtggataac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||    
T  11406102 tgtcctactttaattctttgactatatttgtaattgttacttaattgtttgtttattgtttttaagatattctttgtaatttatatagcaagtggataac 11406201  T
Q  108 atctttgctcagtatctcaagtagtatggatatcagagactt 149  Q
    ||||||||||||||||||||| ||||| |||||||| |||||    
T  11406202 atctttgctcagtatctcaagcagtatcgatatcagggactt 11406243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 159 - 431
Target Start/End: Original strand, 9312729 - 9313001
Alignment:
Q  159 tattcggtgcggggagcttaccgctttctcactaattcaggtgagttggtgaatcggacattagttgaagacatttggcataagctaattcccgcaaagg 258  Q
    |||||| ||||| ||||||| |||||||||||||| || |  ||| ||||| |  || |  |||| || |||||||| ||||| |  |||||| ||||||    
T  9312729 tattcgatgcggagagcttatcgctttctcactaactccgacgagatggtggacaggtctctagtcgacgacatttgacataaacatattccctcaaagg 9312828  T
Q  259 tgtctctgatggtctggcgacttcttcgtgacagacttcccactaaagacaacttggtgcagcgacgtgttcttcctattggtggtgcggcttgtgtatc 358  Q
    ||||| || | || ||||| |||||||| || |||||||||||| | ||||| ||||||   ||||||||||||| |   | ||| ||| ||||||| ||    
T  9312829 tgtctttgttcgtgtggcgccttcttcgcgaaagacttcccactgaggacaatttggtgagacgacgtgttcttcatcacgatggcgcgacttgtgtgtc 9312928  T
Q  359 aggatgtgggcaattggaaacaacatctcatttgtttgtatcttgtaacgtttttggttctctttggtttcat 431  Q
    |||||| ||| | ||||||| |||||| ||| ||||| || ||||| || ||||  | |||||||||| ||||    
T  9312929 aggatgcgggaatttggaaaaaacatcacatatgtttttagcttgtgacattttcagctctctttggtctcat 9313001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 162 - 376
Target Start/End: Original strand, 13215358 - 13215572
Alignment:
Q  162 tcggtgcggggagcttaccgctttctcactaattcaggtgagttggtgaatcggacattagttgaagacatttggcataagctaattcccgcaaaggtgt 261  Q
    ||||||||||||||||| | |||||||||||||||| ||||||||||| || || |  |||| || | |  ||||||||||| ||||||   ||| || |    
T  13215358 tcggtgcggggagcttatcactttctcactaattcaagtgagttggtggataggtccctagtagacgtcgcttggcataagcaaattccactaaaagtat 13215457  T
Q  262 ctctgatggtctggcgacttcttcgtgacagacttcccactaaagacaacttggtgcagcgacgtgttcttcctattggtggtgcggcttgtgtatcagg 361  Q
    || || | || ||||| ||||||||||||||||| || || |  ||||| ||||||    ||||| || ||| ||  | ||||||||||||||| || ||    
T  13215458 ctatgcttgtgtggcgccttcttcgtgacagactccctacaagggacaatttggtgagaagacgtattattcataccgatggtgcggcttgtgtgtctgg 13215557  T
Q  362 atgtgggcaattgga 376  Q
     |||||||| |||||    
T  13215558 gtgtgggcacttgga 13215572  T

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Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 151 - 448
Target Start/End: Original strand, 35076985 - 35077281
Alignment:
Q  151 ctcatcggtattcggtgcggggagcttaccgctttctcactaattcaggtgagttggtgaatcggacattagttgaagacatttggcataagctaattcc 250  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||| ||  |||||||| |||||||||||||| | ||||||    
T  35076985 ctcatgggtattcggtgcggggagcttaccgttttctcactaattcaggcgagttggtggatcagatgttagttgatgacatttggcataaacaaattcc 35077084  T
Q  251 cgcaaaggtgtctctgatggtctggcgacttcttcgtgacagacttcccactaaagacaacttggtgcagcgacgtgttcttcctattggtggtgcggct 350  Q
    | ||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||  ||  |  ||||||| ||||| |||||| |||    
T  35077085 ctcaaaggtgtctctgatggtttggcgtcttcttcgcgacagacttcccactaaggacaacttggtgaggcagcaggttcttcatattgatggtgcagct 35077184  T
Q  351 tgtgtatcaggatgtgggcaattggaaacaacatctcatttgtttgtatcttgtaacgtttttggttctctttggtttcatatatggtcttggctggg 448  Q
    ||||| ||||| |||||||| ||||||||| |||| ||  |||||||| |||| |||  |||| | ||||||||||||||| | ||||||||| ||||    
T  35077185 tgtgtttcaggttgtgggcatttggaaacagcatcccacctgtttgtaacttggaac-attttagctctctttggtttcatgtttggtcttggttggg 35077281  T

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Target: chr5; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 35067296 - 35067437
Alignment:
Q  8 tgtcctactttaattctttgactatatttgtaattgttacttaattgtttgtttattatttttaagatattctttgtaatttatgaagcaagtggataac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35067296 tgtcctactttaattctttgactatatttgtaattgttacttaattgtttgtttattatttttaagatattctttgtaatttatggagcaagtggataac 35067395  T
Q  108 atctttgctcagtatctcaagtagtatggatatcagagactt 149  Q
    ||||||||| ||||||||||| |||||||||||||| |||||    
T  35067396 atctttgcttagtatctcaagcagtatggatatcagggactt 35067437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 159 - 431
Target Start/End: Original strand, 39365677 - 39365949
Alignment:
Q  159 tattcggtgcggggagcttaccgctttctcactaattcaggtgagttggtgaatcggacattagttgaagacatttggcataagctaattcccgcaaagg 258  Q
    ||||||||| ||||||||||||  |||||||||||||| | |||||||||| || || |  |||| || |||||||||||||||| ||||||   ||| |    
T  39365677 tattcggtgtggggagcttaccaatttctcactaattctgatgagttggtggataggtccctagtcgacgacatttggcataagcaaattccattaaaag 39365776  T
Q  259 tgtctctgatggtctggcgacttcttcgtgacagacttcccactaaagacaacttggtgcagcgacgtgttcttcctattggtggtgcggcttgtgtatc 358  Q
    ||||| || |||| ||||| ||||||||||||| ||| || || |  ||||| |||| |    | ||| || ||| ||||| ||||| ||||||||| ||    
T  39365777 tgtctatgctggtgtggcgccttcttcgtgacatactacctacaagggacaatttggcgagatggcgtattattcatattgatggtgaggcttgtgtgtc 39365876  T
Q  359 aggatgtgggcaattggaaacaacatctcatttgtttgtatcttgtaacgtttttggttctctttggtttcat 431  Q
     || |||||||| ||||||||| |  ||||| ||||| ||| |||| || | ||| | |||||||||| ||||    
T  39365877 tgggtgtgggcacttggaaacagctactcatctgtttttattttgtgacatatttagctctctttggtatcat 39365949  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 34423979 - 34424044
Alignment:
Q  253 caaaggtgtctctgatggtctggcgacttcttcgtgacagacttcccactaaagacaacttggtgc 318  Q
    |||||||||||||| | || ||||| ||||||||  ||||||||||||| ||||| || |||||||    
T  34423979 caaaggtgtctctgtttgtgtggcgtcttcttcgcaacagacttcccacaaaagataatttggtgc 34424044  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 169 - 426
Target Start/End: Original strand, 46218826 - 46219083
Alignment:
Q  169 ggggagcttaccgctttctcactaattcaggtgagttggtgaatcggacattagttgaagacatttggcataagctaattcccgcaaaggtgtctctgat 268  Q
    ||||||| || ||||||||||||||||| || ||||||||| || || |  |||| || |||||||||||| | |  ||| || ||||||||||| || |    
T  46218826 ggggagcgtatcgctttctcactaattccggagagttggtggataggtctctagtcgatgacatttggcatcaacatatttcctcaaaggtgtctttgtt 46218925  T
Q  269 ggtctggcgacttcttcgtgacagacttcccactaaagacaacttggtgcagcgacgtgttcttcctattggtggtgcggcttgtgtatcaggatgtggg 368  Q
     || ||||||||| ||||  ||||||||||||| ||  |||| ||||||   |||| |||||| | |  || |||  |  ||||||| ||| ||||||||    
T  46218926 cgtgtggcgactttttcgcaacagacttcccaccaagaacaatttggtgagacgacatgttctccatcatgatggcacaacttgtgtgtcaagatgtggg 46219025  T
Q  369 caattggaaacaacatctcatttgtttgtatcttgtaacgtttttggttctctttggt 426  Q
     | |||||||||||| | ||||| ||| || ||||| || | ||| | ||||||||||    
T  46219026 aatttggaaacaacagcacatttatttttagcttgtgacatatttagctctctttggt 46219083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 319
Target Start/End: Original strand, 18991679 - 18991743
Alignment:
Q  255 aaggtgtctctgatggtctggcgacttcttcgtgacagacttcccactaaagacaacttggtgca 319  Q
    |||||||||||| |||| ||| | || |||||| | |||||||| ||||||||||||||||||||    
T  18991679 aaggtgtctctgttggtgtggtgcctccttcgtaatagacttcctactaaagacaacttggtgca 18991743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 333
Target Start/End: Complemental strand, 12950172 - 12950112
Alignment:
Q  273 tggcgacttcttcgtgacagacttcccactaaagacaacttggtgcagcgacgtgttcttc 333  Q
    ||||| ||||||||  | |||||||| || |||||||||||||||| ||| ||||||||||    
T  12950172 tggcgccttcttcgcaatagacttccaacaaaagacaacttggtgcggcggcgtgttcttc 12950112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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