View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4598_high_1 (Length: 535)
Name: NF4598_high_1
Description: NF4598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4598_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 110 - 530
Target Start/End: Original strand, 2892538 - 2892954
Alignment:
| Q |
110 |
ctcactcactttttccatacgtaagttcatcaaattgattgttagcgccgccgccagtcatttccaaatcaatcttcttttaccaaattctggaatatat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2892538 |
ctcactcactttttccatacgtaagttcatcaaattgattgttagcgccgccgctagtcatttccaaatcaatcttcttttaccaaattctggaatatat |
2892637 |
T |
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| Q |
210 |
attacatgaggtgttatgatgtgatactggatactttcaataaaacaaaacaaggaattaacatgttcaatcaaattcgactctaattattcatacttgt |
309 |
Q |
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| T |
2892638 |
attacatgaggtgttatgatgtgatactggatactttcaataaaacaaaacaaggaattaacatgttcaatcaaattcgactctaattattcatacttgt |
2892737 |
T |
|
| Q |
310 |
cttaaacatataagtacaaggtacataaccagaatacaacatagttcttcacaatggataatcaaaacacatgtcttaatcattaaggacataatatgat |
409 |
Q |
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| T |
2892738 |
cttaaacatataagtacaaggtacataaccagaatacaacatagttcttcacaatggataatcaaaacacatgtcttaatcattaaggacataatatgat |
2892837 |
T |
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| Q |
410 |
tatgatatatagggagctacatgataactcatatcagtcaacaaacatgaaatttcatgagataaaacataagacacaactaagcttcaactaaatggcc |
509 |
Q |
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| T |
2892838 |
tatgatatatagggagctacatgataactcatatcagtc----aacatgaaatttcatgagataaaacataagacacaactaagcttcaagtaaatggcc |
2892933 |
T |
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| Q |
510 |
ttctctttcccctttgctact |
530 |
Q |
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| T |
2892934 |
ttctccttcccttttgatact |
2892954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 2878124 - 2878218
Alignment:
| Q |
110 |
ctcactcactttttccatacgtaagttcatcaaattgattgttagcgccgccgccagtcatttccaaatcaatcttcttttaccaaattctggaa |
204 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||| |||||| |
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| T |
2878124 |
ctcactcactttttccatacgtagattcatcaaattgattgttagcgacgccgccatacatttccaaatcaatcttcttataccaaatcctggaa |
2878218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 2793781 - 2793726
Alignment:
| Q |
137 |
catcaaattgattgttagcgccgccgccagtcatttccaaatcaatcttcttttac |
192 |
Q |
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||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
2793781 |
catcaaattcattgttagcgccgacgccatacatttccaaatcaatcttcttttac |
2793726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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