View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4598_high_2 (Length: 467)
Name: NF4598_high_2
Description: NF4598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4598_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 7 - 453
Target Start/End: Complemental strand, 31347279 - 31346833
Alignment:
| Q |
7 |
tgagaagaaaaattgtggaaagaaaaaggatggttcaaaacatggaaggtttaactcctctagagaaggaccatcaaatactaatgaatctctattgcct |
106 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31347279 |
tgagaagaaaaattgtgcaaagaaaaaggatgtttcaaaacatggaaggtttaactcctctagagaaggaccatcaaatactaatgaatctctattgcct |
31347180 |
T |
|
| Q |
107 |
caattattggattcttctccatacaatagtgaaaaccaaaccactctttctgatttctctcaaaacaaggtgaaaccaaaatcacaagatgacaacattg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31347179 |
caattattggattcttctccatacaatagtgaaaaccaaaccactctttctgatttctctcaaaacaaggtgaaaccaaaatcacaagatgacaacattg |
31347080 |
T |
|
| Q |
207 |
ttcataacaatgaaactagtatcttgaacatttcatcctcttcaaagcaaatggatgtttatcctttagctgaagtaatagctgccgatttgaaccaaac |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31347079 |
ttcataacaatgaaactagtatcttgaacatttcatcctcttcaaaacaaatggatgtttatcctttagctgaagtaatagctgctgatttgaaccaaac |
31346980 |
T |
|
| Q |
307 |
tacaatggtcggaaattcatcaaactttttcttctctcaagaccaatcgatgttgaggatgcagttggagaatgagaatattggaacaacctcaaaccaa |
406 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31346979 |
ctcaatggtcggaaattcgtcaaactttttcttctctcaagaccaatcgctgttgaggatgcagttggagaatgagaatattggaacaacctcaaaccaa |
31346880 |
T |
|
| Q |
407 |
agcataaaccaagagttttcttttgggagatattctgatgatgatat |
453 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31346879 |
agcataaaccaagagttttcttttgggagatattctgatgatgatat |
31346833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 7 - 402
Target Start/End: Complemental strand, 31357939 - 31357544
Alignment:
| Q |
7 |
tgagaagaaaaattgtggaaagaaaaaggatggttcaaaacatggaaggtttaactcctctagagaaggaccatcaaatactaatgaatctctattgcct |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31357939 |
tgagaagaaaaattgtggaaagaaaaaggatggttcaaaacatggaaggtttaactcctctagagaaggaccatcaaatactaatgaatctctattgcct |
31357840 |
T |
|
| Q |
107 |
caattattggattcttctccatacaatagtgaaaaccaaaccactctttctgatttctctcaaaacaaggtgaaaccaaaatcacaagatgacaacattg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31357839 |
caattattggattcttctccatacaatagtgaaaaccaaaccactctttctgatttctctcaaaacaaggtgaaaccaaaatcacaagatgacaacattg |
31357740 |
T |
|
| Q |
207 |
ttcataacaatgaaactagtatcttgaacatttcatcctcttcaaagcaaatggatgtttatcctttagctgaagtaatagctgccgatttgaaccaaac |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
31357739 |
ttcataacaatgaaactagtatcttgaacatttcatcctcttcaaaacaattggatgtttatcctttagctgaagtaatagctgctgatttgaaccaaac |
31357640 |
T |
|
| Q |
307 |
tacaatggtcggaaattcatcaaactttttcttctctcaagaccaatcgatgttgaggatgcagttggagaatgagaatattggaacaacctcaaa |
402 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31357639 |
ctcaatggtcgggaattcgtcaaactttttcttctctcaagaacaattgctgttgaggatgcagttggagaatgagaatattggaacaacctcaaa |
31357544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 178 - 338
Target Start/End: Original strand, 2920267 - 2920430
Alignment:
| Q |
178 |
gaaaccaaaatcacaagatgacaacattgttcataacaatgaaactagtatcttgaacatttcatcctcttcaaagcaaatggatgtttat---ccttta |
274 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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|
| T |
2920267 |
gaaatcaaaaacacaagatgacaacattgttcataacaatgaaacttgtatcttgaacatttcatcctcttcaaaacaaatggatgtttataaccctttc |
2920366 |
T |
|
| Q |
275 |
gctgaagtaatagctgccgatttgaaccaaactacaatggtcggaaattcatcaaactttttct |
338 |
Q |
| |
|
||||||| || || ||| |||| |||||||| |||||||||| ||||||||||||||||||| |
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|
| T |
2920367 |
gctgaaggaacagttgctgattccaaccaaacctcaatggtcgggaattcatcaaactttttct |
2920430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 178 - 348
Target Start/End: Original strand, 2925652 - 2925822
Alignment:
| Q |
178 |
gaaaccaaaatcacaagatgacaacattgttcataacaatgaaactagtatcttgaacatttcatcctcttcaaagcaaatggatgtttatcctttagct |
277 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| ||||||||| |
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|
| T |
2925652 |
gaaaccaaaaacacaatatgacaacattgttcataacaatgaaacaagtatcttgaacatttcatcgtcttcaaaacaaatggatgtttaccctttagct |
2925751 |
T |
|
| Q |
278 |
gaagtaatagctgccgatttgaaccaaactacaatggtcggaaattcatcaaactttttcttctctcaaga |
348 |
Q |
| |
|
| || || || || ||| |||| ||| |||||| ||| ||||| ||||||||||||||||| ||||| |
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|
| T |
2925752 |
ggagcaacagtggctgatcccaacctaacctcaatggccgggaattcttcaaactttttcttctcccaaga |
2925822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 2925461 - 2925612
Alignment:
| Q |
17 |
aattgtggaaagaaaaaggatggttcaaaacatggaaggtttaactcctctagagaaggaccatcaaatactaat---gaatctctattgcctcaattat |
113 |
Q |
| |
|
|||||||||||||||| | |||||||||||| |||||||| ||||||||||||||||| |||||||||||||||| | |||||||| | ||| ||| | |
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|
| T |
2925461 |
aattgtggaaagaaaatgaatggttcaaaacttggaaggtctaactcctctagagaagaaccatcaaatactaatgcagcatctctatgggctccatttt |
2925560 |
T |
|
| Q |
114 |
tggattcttctccatacaatagtgaaaaccaaaccactctttctgatttctc |
165 |
Q |
| |
|
|||| | |||||| |||||||||||||| ||| |||| || |||||||||| |
|
|
| T |
2925561 |
tggaattttctccctacaatagtgaaaataaaatcactattcctgatttctc |
2925612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 2920151 - 2920241
Alignment:
| Q |
17 |
aattgtggaaagaaaaaggatggttcaaaacatggaaggtttaactcctctagagaaggaccatcaaatactaatgaatctctattgcctc |
107 |
Q |
| |
|
||||||||||| |||| | |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
2920151 |
aattgtggaaacaaaatgaatggttcaaaacttggaaggtctaactcctctagagaaggaccatcaaatactaatgcaactctattgcctc |
2920241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 7e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 178 - 331
Target Start/End: Original strand, 29272304 - 29272460
Alignment:
| Q |
178 |
gaaaccaaaatcacaagatgacaacattgttcataacaatgaaactagtatcttgaacatttcatcctcttcaaagcaaatggatgtttat---ccttta |
274 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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|
| T |
29272304 |
gaaaccaaaaacacaagatgacaacattgttcacaacaatgaaactagtatcttgaacatttcatcctcttcaaaacaaatggatgtttataacccttta |
29272403 |
T |
|
| Q |
275 |
gctgaagtaatagctgccgatttgaaccaaactacaatggtcggaaattcatcaaac |
331 |
Q |
| |
|
||||||| || | ||| |||| |||||||| |||||||||| |||||||||||| |
|
|
| T |
29272404 |
gctgaagcaacaattgctgattccaaccaaacctcaatggtcgggaattcatcaaac |
29272460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 29272202 - 29272239
Alignment:
| Q |
65 |
tctagagaaggaccatcaaatactaatgaatctctatt |
102 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
29272202 |
tctagagaaggagcatcaaatactaatgcatctctatt |
29272239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 178 - 337
Target Start/End: Original strand, 9447671 - 9447837
Alignment:
| Q |
178 |
gaaaccaaaatcacaagatgacaacattgttcataacaatgaaactag----tatcttgaacatttcatcctcttcaaagcaaatggatgtttat---cc |
270 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| || |
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|
| T |
9447671 |
gaaaccaaaaacacaagacgacaacattgttcataacaatgaaactagtatatatcttgaacatttcatcctcttcaaaacaaatggatgtttataaccc |
9447770 |
T |
|
| Q |
271 |
tttagctgaagtaatagctgccgatttgaaccaaactacaatggtcggaaattcatcaaactttttc |
337 |
Q |
| |
|
||||||||||| || | ||| ||| |||||||| |||| ||||| |||||||||||||||||| |
|
|
| T |
9447771 |
tttagctgaagcaacaattgcttattccaaccaaacctcaattgtcgggaattcatcaaactttttc |
9447837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 65 - 127
Target Start/End: Original strand, 9447549 - 9447611
Alignment:
| Q |
65 |
tctagagaaggaccatcaaatactaatgaatctctattgcctcaattattggattcttctcca |
127 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| ||||||| |
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|
| T |
9447549 |
tctagagaaggaccatcaaatactaatgcatctctattgcctccattgttggattattctcca |
9447611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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