View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4598_high_9 (Length: 235)
Name: NF4598_high_9
Description: NF4598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4598_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 1891147 - 1891359
Alignment:
| Q |
1 |
ttgcagattggttccaccactaagtttctccacaatattgaaaagtgtgcttcttggagcaatagggtaatgccaaaatggtcttatcctttactccaat |
100 |
Q |
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| T |
1891147 |
ttgcagattgcttccaccactaagtttctccacaatattgaaaagtgtgcttcttggagcaatagggtaatgccaaaatgatcttatcctttactccaat |
1891246 |
T |
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| Q |
101 |
tattgttaatgtgtcttttagtatactactgcctcgttctttattataggagacagttcactttctaggttcattgagcaactgatgtatctggtctata |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1891247 |
tattgttaatgtgtcttttagtatactactacctcgttctttattataggagacagttcactttctaggttcattgagtaactgatgtatctggtctata |
1891346 |
T |
|
| Q |
201 |
tgttggatcagat |
213 |
Q |
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|| | |||||||| |
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| T |
1891347 |
tgatagatcagat |
1891359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 1895942 - 1896026
Alignment:
| Q |
17 |
ccactaagtttctccacaatattgaaaagtgtgcttcttggagcaatagggtaatgcc-aaaatggtcttatcctttactccaat |
100 |
Q |
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| T |
1895942 |
ccactcagtttctccatagtatgcaaaattgtacttcttggtgcaatagggtaatgccaaaaatggccttatactttactacaat |
1896026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 1905803 - 1905858
Alignment:
| Q |
23 |
agtttctccacaatattgaaaagtgtgcttcttggagcaatagggtaatgccaaaa |
78 |
Q |
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| T |
1905803 |
agtttctctataatatgtaaaagtgtgcttcttggtgcaatagggtaatggcaaaa |
1905858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 1884378 - 1884432
Alignment:
| Q |
17 |
ccactaagtttctccacaatattgaaaagtgtgcttcttggagcaatagggtaat |
71 |
Q |
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| T |
1884378 |
ccactcagtttctccataatatgcaaaattgtgcttcttggagcgatagggtaat |
1884432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 24986071 - 24986007
Alignment:
| Q |
136 |
gttctttattataggagacagttcactttctaggttcattgagcaactgatgtatctggtctata |
200 |
Q |
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|||| |||||||| |||||| |||||||| ||||||||||| || |||||||| ||||||||| |
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| T |
24986071 |
gttccttattataagagacaattcactttttaggttcattggataattgatgtatatggtctata |
24986007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 42896153 - 42896215
Alignment:
| Q |
138 |
tctttattataggagacagttcactttctaggttcattgagcaactgatgtatctggtctata |
200 |
Q |
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| T |
42896153 |
tctttattataagaagcaattcactttttaggttcattgaataactgatgtatctggtctata |
42896215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 29290808 - 29290852
Alignment:
| Q |
157 |
ttcactttctaggttcattgagcaactgatgtatctggtctatat |
201 |
Q |
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| T |
29290808 |
ttcactttttagattcattgaacaactgatgtatctgatctatat |
29290852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 11045652 - 11045693
Alignment:
| Q |
136 |
gttctttattataggagacagttcactttctaggttcattga |
177 |
Q |
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| T |
11045652 |
gttctttattatatgagacaattcactttttaggttcattga |
11045693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 11047500 - 11047541
Alignment:
| Q |
136 |
gttctttattataggagacagttcactttctaggttcattga |
177 |
Q |
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||||||||||||| |||||| |||||||| |||||||||||| |
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| T |
11047500 |
gttctttattatatgagacaattcactttttaggttcattga |
11047541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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