View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4598_low_3 (Length: 409)
Name: NF4598_low_3
Description: NF4598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4598_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 19189858 - 19190225
Alignment:
| Q |
19 |
aattattatggtggtcatgggaaggaacaacgtcacagccagaaccattcgagtaccgagcttttttcctctgctaaggtcttgtcggacgcggcacagt |
118 |
Q |
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| T |
19189858 |
aattattatggtggtcatgggaaggaacaacgtcacagccagaaccattcgagtaccgagcttttttcctctgctaaggtcttgtcggacgcggcacagt |
19189957 |
T |
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| Q |
119 |
ccgtttacaaccatgaacctggcaaagtgaacaaggccaaggttgcggttgccgcttccaatattttaggtgcaactggtgttgttgatgagagtaaggg |
218 |
Q |
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| T |
19189958 |
ccgtttacaaccatgaacctggcaaggtgaacaaggccaaggttgcggttgctgcttccaatattttaggtgcaactggtgttgttgatgagagtaaggg |
19190057 |
T |
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| Q |
219 |
cgttggcatgtatgttgacaaagccgctggttatctaagtcaacatgactcttcctccggtgttcctaccggacgaaaaaatggttattctggtggtggg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
19190058 |
cgttggcatgtatgttgacaaagccgctggttatctaagtcaacatgactcttcctccggtgttcctaccggacgaaaaaagggttattctggtggtggg |
19190157 |
T |
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| Q |
319 |
tttggtggaaatggtggttattatggaaataaggataataagtatcatgagagtggttatggacgtta |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19190158 |
tttggtggaaatggtggttattatggaaataaggataataagtatcatgagagtggttatggacgtta |
19190225 |
T |
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