View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4598_low_4 (Length: 358)
Name: NF4598_low_4
Description: NF4598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4598_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 84 - 354
Target Start/End: Original strand, 18492237 - 18492507
Alignment:
| Q |
84 |
gtacatagatatacgtatacaccctcatatcggaggcacaataaaatgcatgtgaatttgtgaattcactcttttctccacttgttttgatgccgccagt |
183 |
Q |
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| T |
18492237 |
gtacgtagatatatgtatacaccctcatatcggaggcacaataaaatgcatgtcaatctgtgaattcactcttttctccacttgttttgatgccgccagt |
18492336 |
T |
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| Q |
184 |
attgatatactacaaaactctagcttcttctttcccgaagaaaatagttccattttatatttcttttcatcactctttcaaatgaatgtgtttgcgttct |
283 |
Q |
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| T |
18492337 |
attgatatactgcaaaactctagcttcttcttttccgaagaaaatagttccattttatatttcttttcatcactctttcaaatgaatgtgtttgcgttct |
18492436 |
T |
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| Q |
284 |
caaatttcgtcgcctttatttcagatctctcagatttcgtcgtctctatgtcagatctctgcatctctctc |
354 |
Q |
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| T |
18492437 |
cagatttcgtcgcctttatttcagatctctcagattccgtcgtctctatgtcagatcccttcatttctctc |
18492507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 190 - 290
Target Start/End: Original strand, 18470819 - 18470919
Alignment:
| Q |
190 |
atactacaaaactctagcttcttctttcccgaagaaaatagttccattttatatttcttttcatcactctttcaaatgaatgtgtttgcgttctcaaatt |
289 |
Q |
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|||||| |||||||||||||||||||| | |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
18470819 |
atactataaaactctagcttcttcttttcagaagaaaacagttccattttatatttctattcatcactctttcaaatgaatgtgtttgtgttctcagatt |
18470918 |
T |
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| Q |
290 |
t |
290 |
Q |
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| T |
18470919 |
t |
18470919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 18492033 - 18492093
Alignment:
| Q |
1 |
ttttgattcacttgttacagtacatgaattttgagttatgctttcactttttctattgttt |
61 |
Q |
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| T |
18492033 |
ttttgattcacttgttacagtacatgaattttgatttatgctttcactttttcttttgttt |
18492093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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