View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4598_low_5 (Length: 353)
Name: NF4598_low_5
Description: NF4598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4598_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 347
Target Start/End: Complemental strand, 26369145 - 26368818
Alignment:
| Q |
20 |
tattgcattttctcactttataatatttcttatcaagaggtaccattcctacttaataaagttaatttatggatatttaatagatgttgtttcgagtttt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26369145 |
tattgcattttctcactttataatatttcttatcaagaggtaccattcctacttaataaagttaatttatggatatttaatagatgttgtttcgagtttt |
26369046 |
T |
|
| Q |
120 |
ctcctataaagttgccgaagaactgatatttcatagaataggctttataaataagaaaacatcattctactttttgataggtcttctcattatgggcggt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26369045 |
ctcctataaagttgccgaagaactgatatttcatagaataggctttataaataagaaaacatcattctactttttgataggtcttctcattatgggcggt |
26368946 |
T |
|
| Q |
220 |
tagttctagaaggttaggtggtttgaacttcacaactggaaatgttggtgatgttcttgcaatatcaggtacatctttgatatgtgtctgcatcccaaga |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26368945 |
tagttctagaaggttaggtggtttgaacttcacaactggaaatgttggtgatgttcttgcaatatcaggtacatctttgatatgtgtctgcatcccaaga |
26368846 |
T |
|
| Q |
320 |
catactttattttgtgcattcatctcac |
347 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
26368845 |
catactttattttgtgcattcatttcac |
26368818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 197 - 297
Target Start/End: Complemental strand, 16587946 - 16587846
Alignment:
| Q |
197 |
taggtcttctcattatgggcggttagttctagaaggttaggtggtttgaacttcacaactggaaatgttggtgatgttcttgcaatatcaggtacatctt |
296 |
Q |
| |
|
||||| |||||||||||||| |||||| || ||| |||| |||||||| || ||||||| ||||||||||||||||| |||| |||||| |||||| |
|
|
| T |
16587946 |
taggttttctcattatgggctgttagtcctctgaggctagggggtttgaagtttacaactgatgatgttggtgatgttctttcaatttcaggtgcatctt |
16587847 |
T |
|
| Q |
297 |
t |
297 |
Q |
| |
|
| |
|
|
| T |
16587846 |
t |
16587846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 9e-58; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 170 - 315
Target Start/End: Original strand, 2608611 - 2608756
Alignment:
| Q |
170 |
ataagaaaacatcattctactttttgataggtcttctcattatgggcggttagttctagaaggttaggtggtttgaacttcacaactggaaatgttggtg |
269 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
2608611 |
ataagtaaacatcattctacttcttgataggtcttctcattatgggcggttagtcctagaaggttgggtggtttgaacttcacaactgaaaatgttggtg |
2608710 |
T |
|
| Q |
270 |
atgttcttgcaatatcaggtacatctttgatatgtgtctgcatccc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
2608711 |
atgttcttgcaatatcaggtacatcttttatatgcgtatgcatccc |
2608756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 2608287 - 2608397
Alignment:
| Q |
20 |
tattgcattttctcactttataatatttcttatcaagaggtaccattcctacttaataaagttaatttatggatatttaatagatgttgtttcgagtttt |
119 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||| ||| || |||| |
|
|
| T |
2608287 |
tattgcattttctcactttatgatatttcttatcaagaggtaccatttctacttaataaagttagtttatgcatatttaatagatgttattttgactttt |
2608386 |
T |
|
| Q |
120 |
ctcctataaag |
130 |
Q |
| |
|
|| |||||||| |
|
|
| T |
2608387 |
cttctataaag |
2608397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 197 - 293
Target Start/End: Original strand, 39162150 - 39162246
Alignment:
| Q |
197 |
taggtcttctcattatgggcggttagttctagaaggttaggtggtttgaacttcacaactggaaatgttggtgatgttcttgcaatatcaggtacat |
293 |
Q |
| |
|
||||| ||||| |||||||| || ||| | |||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| |||||| |
|
|
| T |
39162150 |
taggttttctctttatgggccgtcagtccccgaaggttaggtggtttgaactttacaactaatgatgttggcaatgttcttgcaatatcaagtacat |
39162246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University