View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4599-Insertion-2 (Length: 736)

Name: NF4599-Insertion-2
Description: NF4599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4599-Insertion-2
NF4599-Insertion-2
[»] chr1 (9 HSPs)
chr1 (129-736)||(21078523-21079127)
chr1 (212-330)||(21074224-21074342)
chr1 (144-318)||(21155142-21155320)
chr1 (42-100)||(21160213-21160271)
chr1 (144-264)||(21160659-21160779)
chr1 (144-179)||(21074362-21074397)
chr1 (212-249)||(27777516-27777553)
chr1 (212-249)||(27782408-27782445)
chr1 (212-249)||(38227143-38227180)
[»] chr3 (1 HSPs)
chr3 (147-318)||(21249641-21249814)
[»] chr4 (2 HSPs)
chr4 (144-267)||(27731734-27731857)
chr4 (144-246)||(27738769-27738871)
[»] chr7 (1 HSPs)
chr7 (212-249)||(440936-440973)


Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 129 - 736
Target Start/End: Complemental strand, 21079127 - 21078523
Alignment:
Q  129 taaaatacaacaatgatgagttcaaatcacctaaattagaaaatgaaagaccagttgaactcattcatctgcaacaccattcgttggaagctcgttcaaa 228  Q
    ||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  21079127 taaaatacaacaatga---gttcaaatcacctaaattagaaaatgaaagaccagttgaacacattcatctgcaacaccatttgttggaagctcgttcaaa 21079031  T
Q  229 tcaaaattcctaacaactttttctgacttcaattcattatgactcagttctctccctgattcaccttcattatttttcttcatttcttcaatgtcaatag 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21079030 tcaaaattcctaacaactttttctgacttcaattcattatgactctgctctctccctgattcaccttcattatttttcttcatttcttcaatgtcaatag 21078931  T
Q  329 agctgtattgactgcaaccttctaatgtctgcaaggtcttgttatcagtagaaaatgaacggggaatcttgaatctcagcaccaaactcttcttagtgtt 428  Q
    ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21078930 agccgtattgactgcaaccttctgatgtctgcaaggtcttgttatcagtagaaaatgaacggggaatcttgaatctcagcaccaaactcttcttagtgtt 21078831  T
Q  429 attataagggaccttcaccttggtatctggtgtttcaccagtgtcattagatgatgaaggttgaatcttgaatctcagcaccaagctcttttctctgtta 528  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  21078830 attataagggaccttcaccttggtatctggtgtttcaccagtgtcattagatgatgaaggttgaatcttgaatctcagcaccaagctcttttctctatta 21078731  T
Q  529 ttcttgttaatactcttcactttggtccctggtgtttcatcaatgtcaccgctatcttgtttctggatgttgtcattatctgtagtattgcttgaaagtt 628  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  21078730 ttcttgttaatacccttcactttggtccctggtgtttcatcaatgtcaccactatcttgtttctggatgttgtcattatctgtagtattgcttgaaattt 21078631  T
Q  629 tgagccttttaggtgtgtgnnnnnnnnnnnnnnnnnnnnnnccaccaccaccacgagacatatccaagagtatatgtgctgcattaagaagttcatgatc 728  Q
    |||||||||||||||||||                      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21078630 tgagccttttaggtgtgtgatcatcatcatcgtcatcatcaccaccaccaccacgagacatatccaagagtatatgtgctgcattaagaagttcatgatc 21078531  T
Q  729 aatcatat 736  Q
    ||||||||    
T  21078530 aatcatat 21078523  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 212 - 330
Target Start/End: Complemental strand, 21074342 - 21074224
Alignment:
Q  212 ttggaagctcgttcaaatcaaaattcctaacaactttttctgacttcaattcattatgactcagttctctccctgattcaccttcattatttttcttcat 311  Q
    |||||| ||| ||||||||||||||| |||||||| | |||| |||||||||| |||| ||  |||||||| | | ||||||||||||||| |||||| |    
T  21074342 ttggaatctcattcaaatcaaaattcataacaactctatctgccttcaattcaatatggcttggttctctcacggtttcaccttcattattgttcttctt 21074243  T
Q  312 ttcttcaatgtcaatagag 330  Q
     ||||||||||||||||||    
T  21074242 ctcttcaatgtcaatagag 21074224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 318
Target Start/End: Original strand, 21155142 - 21155320
Alignment:
Q  144 atgagttcaaatcacctaaattagaaaatgaaagaccagttgaactcattcatctgcaacaccattcgttggaagctcgttcaaatcaaaattcctaaca 243  Q
    ||||||| |||| |||||||| ||| |||||| ||||| |||   |||||||| ||||||| | |  ||||||||||| ||||||||||||||| |||||    
T  21155142 atgagtttaaatgacctaaataagacaatgaa-gaccaattggtttcattcatgtgcaacatcttcagttggaagctcattcaaatcaaaattcataaca 21155240  T
Q  244 actttttctgacttcaattcattatgactcagttctctccctgatt-----caccttcattatttttcttcatttcttca 318  Q
    |||  || || |||||||||||||  |||  |||| ||||||| ||     ||||||| |||||||||||| ||||||||    
T  21155241 actccttttggcttcaattcattagaactatgttccctccctgtttcacaccaccttcgttatttttcttcttttcttca 21155320  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 21160213 - 21160271
Alignment:
Q  42 ttacattagtacatgatatttaaaactatcttaaatctcaatcagctgaaaattaggaa 100  Q
    ||||| || |||||||| ||| ||||||| ||||||||||||||||||||| |||||||    
T  21160213 ttacactaatacatgatcttttaaactattttaaatctcaatcagctgaaagttaggaa 21160271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 144 - 264
Target Start/End: Original strand, 21160659 - 21160779
Alignment:
Q  144 atgagttcaaatcacctaaattagaaaatgaaagaccagttgaactcattcatctgcaacaccattcgttggaagctcgttcaaatcaaaattcctaaca 243  Q
    |||||||||||| ||||||   ||| |||||||||||| |||   | ||||||||| |||| | |  ||||||| ||| ||||||||||||||| |||||    
T  21160659 atgagttcaaatgacctaaccaagacaatgaaagaccaattggttttattcatctgaaacatcttctgttggaaactcattcaaatcaaaattcataaca 21160758  T
Q  244 actttttctgacttcaattca 264  Q
    |||  || || ||||||||||    
T  21160759 actccttttggcttcaattca 21160779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 179
Target Start/End: Complemental strand, 21074397 - 21074362
Alignment:
Q  144 atgagttcaaatcacctaaattagaaaatgaaagac 179  Q
    ||||||||||||||||||||| ||||||||||||||    
T  21074397 atgagttcaaatcacctaaataagaaaatgaaagac 21074362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 27777553 - 27777516
Alignment:
Q  212 ttggaagctcgttcaaatcaaaattcctaacaactttt 249  Q
    |||||||||||||||||||||||||| | |||||||||    
T  27777553 ttggaagctcgttcaaatcaaaattcttcacaactttt 27777516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 249
Target Start/End: Original strand, 27782408 - 27782445
Alignment:
Q  212 ttggaagctcgttcaaatcaaaattcctaacaactttt 249  Q
    |||||||||||||||||||||||||| | |||||||||    
T  27782408 ttggaagctcgttcaaatcaaaattcttcacaactttt 27782445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 249
Target Start/End: Original strand, 38227143 - 38227180
Alignment:
Q  212 ttggaagctcgttcaaatcaaaattcctaacaactttt 249  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  38227143 ttggaagctcgttcaaatcaacattcttaacaactttt 38227180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 318
Target Start/End: Complemental strand, 21249814 - 21249641
Alignment:
Q  147 agttcaaatcacctaaattagaaaatgaaagaccagttgaactcattcatctgcaacaccattcgttggaagctcgttcaaatcaaaattcctaacaact 246  Q
    ||||||||| |||||||| | | ||||||| |||| |||   |||||||| ||||||| | |  ||| ||||||| ||||||||||||||| ||||||||    
T  21249814 agttcaaatgacctaaataatacaatgaaaaaccaattggtttcattcatgtgcaacatcttctgtttgaagctcattcaaatcaaaattcataacaact 21249715  T
Q  247 ttttctgacttcaattcattatgactcagttctctccctgatt---caccttcattatttttcttcatttcttca 318  Q
      || ||| ||||||||||||  |||| ||||  ||||   ||   |||||||||||||||||||| ||||||||    
T  21249714 ccttttga-ttcaattcattaaaactctgttccatcccattttcgccaccttcattatttttcttcttttcttca 21249641  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 144 - 267
Target Start/End: Original strand, 27731734 - 27731857
Alignment:
Q  144 atgagttcaaatcacctaaattagaaaatgaaagaccagttgaactcattcatctgcaacaccattcgttggaagctcgttcaaatcaaaattcctaaca 243  Q
    ||||||| |||| |||||||| |||  ||||||||| | |||   |||||||| ||| ||| | |  ||||||||||| ||||||||||||||| |||||    
T  27731734 atgagttaaaatgacctaaataagacgatgaaagactaattggtttcattcatgtgccacatcctctgttggaagctcattcaaatcaaaattcataaca 27731833  T
Q  244 actttttctgacttcaattcatta 267  Q
    |||  || || |||||||||||||    
T  27731834 actccttttggcttcaattcatta 27731857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 246
Target Start/End: Original strand, 27738769 - 27738871
Alignment:
Q  144 atgagttcaaatcacctaaattagaaaatgaaagaccagttgaactcattcatctgcaacaccattcgttggaagctcgttcaaatcaaaattcctaaca 243  Q
    |||||||||||| |||||||| ||| |||||||||||| |||   |||||||| || |||| | |   |||||||| | ||||||||||||||| |||||    
T  27738769 atgagttcaaatgacctaaataagacaatgaaagaccaattggtttcattcatgtgaaacatcttctattggaagcgcattcaaatcaaaattcataaca 27738868  T
Q  244 act 246  Q
    |||    
T  27738869 act 27738871  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 249
Target Start/End: Original strand, 440936 - 440973
Alignment:
Q  212 ttggaagctcgttcaaatcaaaattcctaacaactttt 249  Q
    |||||||||||||||||||||||||| | |||||||||    
T  440936 ttggaagctcgttcaaatcaaaattcttcacaactttt 440973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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