View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4599-Insertion-3 (Length: 671)
Name: NF4599-Insertion-3
Description: NF4599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4599-Insertion-3 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 592; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 8 - 671
Target Start/End: Complemental strand, 37084778 - 37084127
Alignment:
| Q |
8 |
atatatccggttgactgaagaggacacaacttctgcttcgcggatatttattaagattctgttccaagagttatctgagcatcttggcatacatgtgctg |
107 |
Q |
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| T |
37084778 |
atatatccggttgactgaagaggacacaacttctgcttcgcggatatttattaagattctgttccaagagttatctgagcatcttggcatacatgtgctg |
37084679 |
T |
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| Q |
108 |
aatgagcggttgaatgatccagcaatgcaggactgttttgaatcaatatttcccaaagatagcacaagaaacacacggttttccactaacttcttcacgt |
207 |
Q |
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| T |
37084678 |
aatgagcggttgaatgatccagcaatgcaggactgttttgaatcaatatttcccaaagatagcacaagaaacacacggttttccattaacttcttcacgt |
37084579 |
T |
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| Q |
208 |
cgattggacttggcgagcttactaagaatctacgcgtctactataaaagtttgaccttgcggagctcccattcatctgatgaaagtggcagaaaacgtag |
307 |
Q |
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| T |
37084578 |
cgattggacttggcgagcttactaagaatctacgcgtctactataaaagtttgaccttgcggagctcccattcatctgatgaaagtggcagaaaacgtag |
37084479 |
T |
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| Q |
308 |
aagaaaataaagcaagtgtattgtaaggcctttgcaaaccttttgatttcacaatatgtttaagttggttgactttcctttttaattacggttgatggtt |
407 |
Q |
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| T |
37084478 |
aagaaaataaagcaagtgtattgtaaggcctttgcaaaccttttgatttcacaatatgtttaagttggttgactttcctttttaattacggttgatggtt |
37084379 |
T |
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| Q |
408 |
agaattcaattctgttgatgtagaaggatgttgacnnnnnnnnnnnnnnnnnnnnnatagatagtttgttctgcttggattgctttatatatctgattta |
507 |
Q |
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| T |
37084378 |
agaattcaattctgttgatgtagaaggatgttgac------------tttttttttatagatagtttgttctgcttggattgctttatatatctgattta |
37084291 |
T |
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| Q |
508 |
ttttgattttgttctcgagatcatattttggtttaactagttctggttttgaatttttgttcccaacaacgactccagagtaaaaacgtgcaaaatttaa |
607 |
Q |
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| T |
37084290 |
ttttgattttgttctcgagatcatattttggtttaactagttctggttttgaatttttgttcccaacaacgactccagagtaaaaacgtgcaaaatttaa |
37084191 |
T |
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| Q |
608 |
gaaaattagatttacaattatgcttagtatgtagttgatgttgcaatatattcataatataagc |
671 |
Q |
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| T |
37084190 |
gaaaattagatttacaattatgcttagtatgtagttgatgttgcaatatattcataatataagc |
37084127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 8 - 441
Target Start/End: Original strand, 37184502 - 37184948
Alignment:
| Q |
8 |
atatatccggttgactgaagaggacacaacttctgcttcgcggatatttattaagattctgttccaagagttatctgagcatcttggcatacatgtgctg |
107 |
Q |
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| T |
37184502 |
atatatccggttgactgaagaggacacaacttcttcttcgcggatatttattaagattctgttccaagagttatctgagcatcttggcatccaggtgctg |
37184601 |
T |
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| Q |
108 |
aatgagcggttgaatgatccagcaatgcaggactgttttgaatcaatatttcccaaagatagcacaagaaacacacggttttccactaacttcttcacgt |
207 |
Q |
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| T |
37184602 |
aatgatcggttgaatgatccagtaatgcaggattgttttgaatcattatttcccaaagatagcacaaaaaacacacggttttccattaacttcttcacgt |
37184701 |
T |
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| Q |
208 |
cgattggacttggcgagcttactaagaatctacgcgtctactataaaagtttgaccttgcggagctcccattcatctgatgaaagtggcagaaaacgtag |
307 |
Q |
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| T |
37184702 |
cgattggacttggcgagcttactaagaatctaggcgtctatttgaaaaatctgaccttgcggagctcccattcattggatgaaagtggcagaaaacgtag |
37184801 |
T |
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| Q |
308 |
aagaaaataaagcaagtgtattgtaaggcctttgcaaaccttttgatttc--------------acaatatgtttaagttggttgactttcctttttaat |
393 |
Q |
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| T |
37184802 |
aagaaaataaagcaaatgcattttaaggcccttgcaaaccttttgatttagaatcaatggttttacaatatgtt-aagttagtttactttcctttttcat |
37184900 |
T |
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| Q |
394 |
tacggttgatggttagaattcaattctgttgatgtagaaggatgttga |
441 |
Q |
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| T |
37184901 |
aactgttgatagttagaattggattctgctgatgtagagggatgttga |
37184948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 11339588 - 11339642
Alignment:
| Q |
19 |
tgactgaagaggacacaacttctgcttcgcggatatttattaagattctgttcca |
73 |
Q |
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||||||| || |||||||||||| ||||||| ||||||||||||||||| ||||| |
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| T |
11339588 |
tgactgaggacgacacaacttcttcttcgcgtatatttattaagattctcttcca |
11339642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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