View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4599-Insertion-5 (Length: 399)
Name: NF4599-Insertion-5
Description: NF4599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4599-Insertion-5 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 7 - 399
Target Start/End: Complemental strand, 39126935 - 39126541
Alignment:
| Q |
7 |
acatatcagtcaattttctaccaaacaattaaatttatcttagtatatttgtataatcgtgcagagtccctagaatatattaacgcaattcacgaacaca |
106 |
Q |
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| T |
39126935 |
acatatcagtcaattttctaccaaacagttaaatttatcttagtatatttgtataatcgtgcagagtccctagaatatattaacgcaattcacgaacaca |
39126836 |
T |
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| Q |
107 |
tgatgtaacctacacttgaaatttaaagtgagaagaaaataagtataatagctggtgtctgaaacaaaacatttctcaagtagcataccagaaacttctg |
206 |
Q |
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| T |
39126835 |
tgatgtaacctacacttgaaatttaaagtgagaagaaaataagtataatagctggtgtctgatacaaaacatttctgaagtagcataccagaaacttctg |
39126736 |
T |
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| Q |
207 |
caaaaccaagagttctacacaattctaaagctatcttgtgctgagaagcaaatccaaaaaaccttcaaaacgtcgacatcatcaaaagaagaagccaaat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39126735 |
caaaaccaagagttctacacaattctaaagctatcttgtgctgagaagcaaatccaaaaaaccttcaaaacgtcgacatcgtcaaaagaagaagccaaat |
39126636 |
T |
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| Q |
307 |
ataaactg--acaggagtagaaaacccagaatcgccgctgaaattcaagttttttcacttatgttagatttcaatttaagagctagcttcattgc |
399 |
Q |
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| T |
39126635 |
ataaactgacacaggagtagaaaacccagaatcgccgctgaatttcaggttttttcacttatgttagatttcaatttaagagctagcttcattgc |
39126541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 110 - 399
Target Start/End: Complemental strand, 39604666 - 39604371
Alignment:
| Q |
110 |
tgtaacctacacttgaaatttaaagtgagaagaaaataagtataatagctggtgtctgaaacaaaacatttctcaagtagcataccagaaact---tctg |
206 |
Q |
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| T |
39604666 |
tgtaacctgcacttgaaatttaaagtgagaaaaaaataagtataatagctggtatctgaaacaaaacatttctaaactaacataccagaagctttatcgg |
39604567 |
T |
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| Q |
207 |
caaaaccaagagttctacacaattctaaagctatcttgtgctgagaagcaaatccaaaaaaccttcaaaacgtcgacatcatcaaaagaagaagccaa-a |
305 |
Q |
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| T |
39604566 |
caaaacccagagttccaaacagctctacagctatcttgtcctgagcagcaaa-ctcgaaaagctttaaaacttcatcttcatcgaaagaaggagccaatc |
39604468 |
T |
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| Q |
306 |
tataaactgac---aggagtagaaaacccagaatcgccgctgaaattcaagttttttcacttatgttagatttcaatttaagagctagcttcattgc |
399 |
Q |
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| T |
39604467 |
cataaattgacacaaggagtagaaaacccagaactgccaccaaattttcggtattttcacttatgttagatttcaaattaagtgctagcttcattgc |
39604371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 101 - 396
Target Start/End: Complemental strand, 39099946 - 39099645
Alignment:
| Q |
101 |
aacacatgatgtaacctacacttgaaatttaaagtgagaagaaaataagtataatagctggtgtctgaaacaaaacatttctcaagtagcataccagaaa |
200 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||| ||||| || || |||||||||| |
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| T |
39099946 |
aacaaatgatgtaacaagcacttgaaatttaaagtgagaagaaaattagtataatagctgttgtctaaaacaaaacttttctaaactaacataccagaag |
39099847 |
T |
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| Q |
201 |
ct---tctgcaaaaccaagagttctacacaattctaaagctatcttgtgctgagaagcaaatccaaaaaaccttcaaaacgtcgacatcatcaaaagaag |
297 |
Q |
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| T |
39099846 |
ctttatcggcaaaacccagaattccaaagagctttacagctatcttgtgctgagcagcaaa-cccaaaaagctttaaaacttcatcttcatcaaaagaag |
39099748 |
T |
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| Q |
298 |
aagccaa-atataaactgac---aggagtagaaaacccagaatcgccgctgaaattcaagttttttcacttatgttagatttcaatttaagagctagctt |
393 |
Q |
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| T |
39099747 |
gagccaatttataaattgacagaaggagtagaaaaccaagaaccgccaccgaattttcagtagtttcacttataaaagatttcaacttaagtgccagctt |
39099648 |
T |
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| Q |
394 |
cat |
396 |
Q |
| |
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||| |
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| T |
39099647 |
cat |
39099645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 107 - 266
Target Start/End: Original strand, 39503870 - 39504033
Alignment:
| Q |
107 |
tgatgtaacctacacttgaaatttaaagtgagaagaaaataagta-taa-tagctggtgtctgaaacaaaacatttctcaagt-agcataccagaaactt |
203 |
Q |
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||||||||| ||||||| |||| | |||||||||||||||||||| ||| ||| |||| |||||||||||||||||||| | |||||| ||| ||| |
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| T |
39503870 |
tgatgtaacatacacttcaaatatgaagtgagaagaaaataagtaataagtaga--gtgtttgaaacaaaacatttctcaaacgaacataccggaagctt |
39503967 |
T |
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| Q |
204 |
---ctgcaaaaccaagagttctacacaattctaaagctatcttgtgctgagaagcaaatccaaaaa |
266 |
Q |
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| T |
39503968 |
tatctgcaaaaccaagagttccaaacagctctacagctatctcgtgctgagcagcaaaaccaaaaa |
39504033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 399
Target Start/End: Complemental strand, 39144733 - 39144651
Alignment:
| Q |
317 |
aggagtagaaaacccagaatcgccgctgaaattcaagttttttcacttatgttagatttcaatttaagagctagcttcattgc |
399 |
Q |
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| T |
39144733 |
aggagtagaaaacctagaatcgccgctgaattttctgtgttttgacttatattggctttcaaatcaagtgctagcttcattgc |
39144651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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