View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4599-Insertion-6 (Length: 296)
Name: NF4599-Insertion-6
Description: NF4599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4599-Insertion-6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 8 - 296
Target Start/End: Original strand, 33154230 - 33154518
Alignment:
| Q |
8 |
atatacataatagaacgaatcttggtgatgaaatcaatggctttcccatgatcttccctcagaagaagctcatattgtttcctcaatgcttgcagtttca |
107 |
Q |
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| T |
33154230 |
atatacataatagaacgaatcttggtgatgaaatcaatggctttctcatgatcttccctcagaagaagctcatattgtttcctcaatgcttgcagtttca |
33154329 |
T |
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| Q |
108 |
ccttctaaaaaggtgtgtcaccacctgtgtgacatttttcaagtgtatcccacacaagctttgatgatgcacaaacataaatctcacctcatcaatactt |
207 |
Q |
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| T |
33154330 |
ccttctaaaaaggtgtgtcaccacctgtgtgacatttttcaagtgtatcccacacaagctttgatgatgcacaaacataaatctcacctcatcaatactt |
33154429 |
T |
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| Q |
208 |
tgataaatcatgaaagtttctttgcaatctttgttctgctctctattcgttgtacgttccacatctgttgcattgtctccaatctcttg |
296 |
Q |
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| T |
33154430 |
tgataaatcatgaaagtttctttgcaatctttattatgctctctattcgttgtacgttccacatctgttgcattgtctccaatctcttg |
33154518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 8 - 295
Target Start/End: Original strand, 25082536 - 25082832
Alignment:
| Q |
8 |
atatacataatagaacgaatcttggtgatgaaatcaatggctttcccatgatcttccctcagaagaagctcatattgtttcctcaatgcttgcagtttca |
107 |
Q |
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||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||| | |||||||||||||||||||| ||||| ||||||||||||| |
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| T |
25082536 |
atatacataatagaacgaatcttggtgataaaatcaatgactttctcatgatcttccatgagaagaagctcatattgttttctcaaagcttgcagtttca |
25082635 |
T |
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| Q |
108 |
ccttctaaaaaggtgtgtcaccacctgtgtgacatttttcaagtgtatcccacacaagctttgatgatgcacaaaca--taaatct----------cacc |
195 |
Q |
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| T |
25082636 |
cctccttcac---tttgtcaccacctgtgtgacatttttcaagtgtatcccacacaaactttgatgatgcacacacacataaatcttatcaaagttcacc |
25082732 |
T |
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| Q |
196 |
tcatcaatactttgataaatcatgaaagtttctttgcaatctttgttctgctctctattcgttgtacgttccacatctgttgcattgtctccaatctctt |
295 |
Q |
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| T |
25082733 |
tcatcaatactttgataaatcatgaaagtttctttgcaatctttattttgctctctattcgttgtacgttccacgtctcttgcattgtctccaatctctt |
25082832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 25545029 - 25544933
Alignment:
| Q |
17 |
atagaacgaatcttggtgatgaaatcaatggctttcccatgatcttccctcagaagaagctcatattgtttcctcaatgcttgcagtttcaccttct |
113 |
Q |
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| T |
25545029 |
atagatcgaatcttgttgatgaaatcaccaactttctcgtgttcttccataacaagaagctcacactgcttcctcaaggcttgcagttttaccttct |
25544933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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