View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4599-Insertion-8 (Length: 238)
Name: NF4599-Insertion-8
Description: NF4599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4599-Insertion-8 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 12078822 - 12079052
Alignment:
| Q |
8 |
catatcacccttactcaaaaaagagttcaacacccaatattattactagtattttaattttaacacattttcttacaaatgacccatgtcaaatgaggct |
107 |
Q |
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| T |
12078822 |
catattacccttactcaaaaaagagttcaacacccaacattattactagtattttaattttaacacattttcttacaaatgacccatgtcaaatgaggct |
12078921 |
T |
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| Q |
108 |
gataaatgtgtaaccgagagagtactaattactcacttacaagggggcaaaggagaaccacacaaacacttattatgcgaaaacgacgatggatcaaacc |
207 |
Q |
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| T |
12078922 |
gataaatgtgtaaccgagagagtactaattactcacttacaagggggcaaaggagaaccacacaaacacttattatgcgaaaacgacgatggatcaaacc |
12079021 |
T |
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| Q |
208 |
cttgcaacttccctccgactgtcggtatagg |
238 |
Q |
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| T |
12079022 |
cttgcaacttccctccgactgtcggtatagg |
12079052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 12095597 - 12095692
Alignment:
| Q |
143 |
cttacaagggggcaaaggagaaccacacaaacacttattatgcgaaaacgacgatggatcaaacccttgcaacttccctccgactgtcggtatagg |
238 |
Q |
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| T |
12095597 |
cttacaaggaggcaaaggagaaccacacaagcccttattatgcgaaaacgacgatggatcaaactcttgcaacttccctccaactgtcggtatagg |
12095692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 12095406 - 12095544
Alignment:
| Q |
8 |
catatcacccttactc-aaaaaagagttcaacaccc--aatattattactagtattttaattttaacacattttcttacaaatgacccatgtcaaatgag |
104 |
Q |
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| T |
12095406 |
cataccacccttactctaaaaaagagttccacacccccaacattattactattattt------taacacattttcttataaatgccccatgttatatgag |
12095499 |
T |
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| Q |
105 |
gctgataaatgtgtaaccgagagagtactaattactcacttacaagg |
151 |
Q |
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| T |
12095500 |
gccgataaatgtgtaaccgattgagtactaatt--tcacttacaagg |
12095544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 1249293 - 1249217
Alignment:
| Q |
147 |
caagggggcaaaggagaaccacacaaacacttattatgcgaaaacgacgatggatcaaacccttgcaacttccctcc |
223 |
Q |
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| T |
1249293 |
caaggggccaagggagcaccacataaacacttattattctcaaaccacgacggatcaaacccttgcaacttccctcc |
1249217 |
T |
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