View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4599_high_3 (Length: 367)

Name: NF4599_high_3
Description: NF4599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4599_high_3
NF4599_high_3
[»] chr4 (9 HSPs)
chr4 (1-361)||(14178691-14179051)
chr4 (1-361)||(14173937-14174297)
chr4 (1-361)||(28611573-28611933)
chr4 (1-361)||(28606811-28607171)
chr4 (1-361)||(44161586-44161944)
chr4 (1-353)||(11104477-11104824)
chr4 (4-299)||(48826710-48827000)
chr4 (91-192)||(48708155-48708256)
chr4 (107-200)||(24726288-24726381)
[»] chr8 (5 HSPs)
chr8 (1-361)||(12930676-12931035)
chr8 (1-361)||(12935422-12935781)
chr8 (130-200)||(26504985-26505055)
chr8 (86-198)||(15588948-15589060)
chr8 (4-49)||(26504850-26504895)
[»] chr1 (1 HSPs)
chr1 (1-361)||(34907139-34907498)
[»] chr7 (7 HSPs)
chr7 (1-361)||(37040431-37040791)
chr7 (1-350)||(15290243-15290589)
chr7 (1-300)||(12099060-12099356)
chr7 (143-355)||(12082021-12082227)
chr7 (1-78)||(12084669-12084746)
chr7 (88-200)||(2757307-2757418)
chr7 (19-56)||(2757236-2757273)
[»] chr5 (4 HSPs)
chr5 (4-345)||(29106886-29107224)
chr5 (1-353)||(42910998-42911346)
chr5 (87-177)||(38997230-38997320)
chr5 (1-76)||(38994704-38994779)
[»] chr2 (1 HSPs)
chr2 (1-361)||(8539183-8539543)
[»] chr3 (3 HSPs)
chr3 (216-354)||(51302168-51302306)
chr3 (4-78)||(51302937-51303011)
chr3 (86-122)||(51302308-51302344)
[»] chr6 (2 HSPs)
chr6 (1-177)||(2100204-2100379)
chr6 (170-200)||(2100723-2100753)


Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 14179051 - 14178691
Alignment:
Q  1 ggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn----tgaacaccaat 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||           |||||||||||    
T  14179051 ggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcaataaaaaaaatgaacaccaat 14178952  T
Q  97 atttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccact 196  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14178951 atttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccact 14178852  T
Q  197 ctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatg 296  Q
    ||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14178851 ctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagagatg 14178756  T
Q  297 atacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14178755 atacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac 14178691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 14174297 - 14173937
Alignment:
Q  1 ggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn----tgaacaccaat 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||            |||||||||||    
T  14174297 ggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagtgataaaaaaaatgaacaccaat 14174198  T
Q  97 atttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccact 196  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14174197 atttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccact 14174098  T
Q  197 ctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatg 296  Q
    ||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14174097 ctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagagatg 14174002  T
Q  297 atacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14174001 atacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac 14173937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 28611573 - 28611933
Alignment:
Q  1 ggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn----tgaacaccaat 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||           |||||||||||    
T  28611573 ggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaaatgaacaccaat 28611672  T
Q  97 atttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccact 196  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28611673 atttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccact 28611772  T
Q  197 ctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatg 296  Q
    ||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28611773 ctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagagatg 28611868  T
Q  297 atacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28611869 atacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac 28611933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 28606811 - 28607171
Alignment:
Q  1 ggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn----tgaacaccaat 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||           | |||||||||    
T  28606811 ggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaaattaacaccaat 28606910  T
Q  97 atttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccact 196  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28606911 atttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccact 28607010  T
Q  197 ctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatg 296  Q
    ||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28607011 ctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagagatg 28607106  T
Q  297 atacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28607107 atacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac 28607171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 44161944 - 44161586
Alignment:
Q  1 ggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn----tgaacaccaat 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||    
T  44161944 ggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgataaaaaaaatgaacaccaat 44161845  T
Q  97 atttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccact 196  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  44161844 atttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaat--tctctccact 44161747  T
Q  197 ctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatg 296  Q
    ||||              ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44161746 ctcttacacacaca----agagatacaatatagtgtttcccgtaagacctacttctattctaatgctattattttatagcacctagaagttatagagatg 44161651  T
Q  297 atacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  44161650 atacccacccggtgtatttttcccacactctctggatttactcaacactctattattcctctcac 44161586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 11104824 - 11104477
Alignment:
Q  1 ggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn-tgaacaccaatatt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||        ||||||||||||||    
T  11104824 ggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagctgtagcgataaaaatgaacaccaatatt 11104725  T
Q  100 taacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctc 199  Q
    |||| | ||||| |||||||||  ||||| ||| |||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||    
T  11104724 taacatagaaaatcctctaatatcgagggtaaa-ccacgggacaaactccgaaaaatattccaccatatctaagaatattacaatattctctccactctc 11104626  T
Q  200 tnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgata 299  Q
    |              ||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||||| ||||||||||||||||||||||||    
T  11104625 ttacacacaa-----agagatacaatatagtgtttcccgtgagacccactcctattcaaatgctattattttataacacctagaagttatagagatgata 11104531  T
Q  300 cccacccggtgtatttttcccacactctctggatttactcaacactctattttt 353  Q
     ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11104530 tccacccggtgtatttttcctacactctctggatttactcaacactctattttt 11104477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 4 - 299
Target Start/End: Original strand, 48826710 - 48827000
Alignment:
Q  4 tcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnt--gaacaccaatattta 101  Q
    |||||||||||||||||| |||||||||||||| |||||| |||  |||||||||||||||||||||||||||||          |||||||||||||||    
T  48826710 tcgacgagcttaacgcaattgtaaattaaaatttcaaaattcaa--gagattggatcttgcagcgcagcggtagcgatagaaaaagaacaccaatattta 48826807  T
Q  102 acgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctn 201  Q
    |||||||||| |||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||     
T  48826808 acgtggaaaatcctctaataccgagggaaaaatcacgggacaa-ctccgaaaaatattccactatattaaagaatattacaatattctcttcgctctct- 48826905  T
Q  202 nnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgata 299  Q
                 |||||||||||||||||||||||||||||   ||| |||||  ||||||||||| ||||||||||||||||||||||||||||||    
T  48826906 ---tacacacacaagagatacaatatagtgtttcccgtgagattcactcctatttgaatgctattattttatagcacctagaagttatagagatgata 48827000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 192
Target Start/End: Original strand, 48708155 - 48708256
Alignment:
Q  91 accaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc 190  Q
    ||||||||||||| || ||||| || ||||||| || ||||||||||| |||||||||| ||||||||| || ||||||||| |||||||||||||||||    
T  48708155 accaatatttaacatgaaaaactctataatactaagagaaaaaccacgtgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctc 48708254  T
Q  191 tc 192  Q
    ||    
T  48708255 tc 48708256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 107 - 200
Target Start/End: Original strand, 24726288 - 24726381
Alignment:
Q  107 gaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct 200  Q
    ||||||| |||||||   |||||||| ||||| ||||||||| ||||||||||||| |||||||||||| || | ||||||||||||| |||||    
T  24726288 gaaaaccatctaatatcaagggaaaagccacgagacaaactctgaaaaatattccattatattaaagaacataataatattctctccattctct 24726381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 12931035 - 12930676
Alignment:
Q  1 ggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn---tgaacaccaata 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||          ||||||||||||    
T  12931035 ggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaatgaacaccaata 12930936  T
Q  98 tttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactc 197  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12930935 tttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactc 12930836  T
Q  198 tctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatga 297  Q
    |||              |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  12930835 tctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagcacctagaagttatagagatga 12930740  T
Q  298 tacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12930739 tacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac 12930676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 12935781 - 12935422
Alignment:
Q  1 ggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn---tgaacaccaata 97  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||          ||||||||||||    
T  12935781 ggctcgacgagcttaacgcaagtgtaaattaaaattccaaaattcaaaagaaactggatcttgcagcgcagcggtagcgataaaaaaatgaacaccaata 12935682  T
Q  98 tttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactc 197  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12935681 tttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactc 12935582  T
Q  198 tctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatga 297  Q
    |||              |||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||    
T  12935581 tctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttttactctaatgctattattttatagcacctagaagttatagagatga 12935486  T
Q  298 tacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12935485 tacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac 12935422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 26504985 - 26505055
Alignment:
Q  130 aaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct 200  Q
    |||||||| | ||||||||| |||||||||| |||||| |||| |||||||||||||||| || |||||||    
T  26504985 aaaaccacagtacaaactccaaaaaatattcaactataataaaaaatattacaatattctttcaactctct 26505055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 15589060 - 15588948
Alignment:
Q  86 tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaata 185  Q
    |||||| |||||||||   || ||||||||||| || |||| |||||| || | |||||||||  ||||||||| |||| ||| ||| |||||||||| |    
T  15589060 tgaacatcaatatttattttgaaaaaccctctattaatgagagaaaaatcaagtgacaaactctaaaaaatatttcactttatcaaacaatattacaaca 15588961  T
Q  186 ttctctccactct 198  Q
    || ||||||||||    
T  15588960 ttttctccactct 15588948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 26504850 - 26504895
Alignment:
Q  4 tcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa 49  Q
    |||||||| |||| | ||||||||||||||||| ||||||||||||    
T  26504850 tcgacgagtttaatggaagtgtaaattaaaatttcaaaatccaaaa 26504895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 34907498 - 34907139
Alignment:
Q  1 ggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn---tgaacaccaata 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||          ||||||||||||    
T  34907498 ggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaatgaacaccaata 34907399  T
Q  98 tttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactc 197  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34907398 tttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactc 34907299  T
Q  198 tctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatga 297  Q
    |||              |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  34907298 tctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagcacctagaagttatagagatga 34907203  T
Q  298 tacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34907202 tacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcac 34907139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 37040431 - 37040791
Alignment:
Q  1 ggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn----tgaacaccaat 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||           |||||||||||    
T  37040431 ggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaaagactggatcttgcagcgcagcggtagcgataaaaaaaatgaacaccaat 37040530  T
Q  97 atttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccact 196  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37040531 atttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattttctccact 37040630  T
Q  197 ctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatg 296  Q
    ||||              |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37040631 ctctcacacacaca----agagatacaatatagtgttttccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagagatg 37040726  T
Q  297 atacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 361  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37040727 atacccacccgatgtatttttcccacactctctggatttactcaacactctatttttcctctcac 37040791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 15290589 - 15290243
Alignment:
Q  1 ggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa-gagattggatcttgcagcgcagcggtagcnnnnnnn----tgaacaccaa 95  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||  ||||           ||||||||||    
T  15290589 ggctcgacgagcttaacgcaattgtaaattaaaatttcaaaatccaaaaagagattggatcttgcagcgcagccttagcgataaaaaaaatgaacaccaa 15290490  T
Q  96 tatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccac 195  Q
    ||||||||||||||||||||||||||| |||| | ||||||||||||||||||| ||| || |||||||||||| |||||||||||||||||||||||||    
T  15290489 tatttaacgtggaaaaccctctaataccgaggtataaaccacgggacaaactccaaaagattttccactatatttaagaatattacaatattctctccac 15290390  T
Q  196 tctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagat 295  Q
    |||||              |||||||||||||||||||| |||||||||| ||| |||||| ||||||||  ||||  ||||||||||||||||||||||    
T  15290389 tctct----tacacacacaagagatacaatatagtgttt-ccgtgagacccactcctattcgaatgctat--tatttcagcacctagaagttatagagat 15290297  T
Q  296 gatacccacccggtgtatttttcccacactctctggatttactcaacactctatt 350  Q
    |||||||||||||||||||||| ||||||| |||||||||| |||||||||||||    
T  15290296 gatacccacccggtgtattttt-ccacactttctggatttagtcaacactctatt 15290243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 12099356 - 12099060
Alignment:
Q  1 ggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn-tgaacaccaatatt 99  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||  ||||||||||| || || ||||        |||| | |||||||    
T  12099356 ggctcgacgagtttaacgcgagtgtaaattaaaattccaaaatccaaaagagatatgatcttgcagctcaccgatagcgataaaaatgaaaagcaatatt 12099257  T
Q  100 taacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctc 199  Q
    | ||||| |||||||||||||   || |||||||||| ||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||    
T  12099256 ttacgtgaaaaaccctctaatgacgaaggaaaaaccaagggacaaactccgaaaaaatttcaactatattaaagaatattacaatattctctccactctc 12099157  T
Q  200 tnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgata 299  Q
    |              ||||| ||||||| |||||||  |||||||  ||| |||||| |||| |||||| ||||| |||||| |||||||||||||||||    
T  12099156 t----tacacgcacaagagacacaatattgtgtttctagtgagactcactcctattcaaatgatattattttataacacctaaaagttatagagatgata 12099061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 143 - 355
Target Start/End: Complemental strand, 12082227 - 12082021
Alignment:
Q  143 aaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgag 242  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||              |||||||||||||||||||||   ||||    
T  12082227 aaactccaaaaaatattccactatattaa-gaatattacaatattttctccactctcttacacggaaa----agagatacaatatagtgtttctaatgag 12082133  T
Q  243 acctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaac 342  Q
    ||   || |||||| |||| |||||| ||||||| |||||||||||||||||| ||||| ||||| | |||||||||| |  | ||||||||||| ||||    
T  12082132 actcgctcctattcaaatgttattattttatagcgcctagaagttatagagataatacctacccgatatatttttccc-ctttttctggatttacccaac 12082034  T
Q  343 actctatttttct 355  Q
    |||||| ||||||    
T  12082033 actctaattttct 12082021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 12084746 - 12084669
Alignment:
Q  1 ggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagc 78  Q
    ||||| ||||||||||| | || ||||||||||||| |||||||||| ||| ||||||||||| |||||| |||||||    
T  12084746 ggctcaacgagcttaacacgagggtaaattaaaatttcaaaatccaatagacattggatcttgtagcgcaacggtagc 12084669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 2757307 - 2757418
Alignment:
Q  88 aacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatatt 187  Q
    |||||||||||||||  || ||| |||| |||| || | |||||||||| | |||||| |  ||||| |||||||||||||| || |||||| || ||||    
T  2757307 aacaccaatatttaatatgaaaacccctttaatgcttaaggaaaaaccatgagacaaattttgaaaa-tattccactatatttaaaaatattgcactatt 2757405  T
Q  188 ctctccactctct 200  Q
    |||||||||||||    
T  2757406 ctctccactctct 2757418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 2757236 - 2757273
Alignment:
Q  19 caagtgtaaattaaaattccaaaatccaaaagagattg 56  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  2757236 caagtgtaaattaaaattccaaaattcaaaagaaattg 2757273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 4 - 345
Target Start/End: Original strand, 29106886 - 29107224
Alignment:
Q  4 tcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn-tgaacaccaatatttaa 102  Q
    |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||        |||||||||||||||||    
T  29106886 tcgaggagcttaatgcaagtgtaaattaaaattccaaaatccaaaaaagattggatcttgcagcgcagcggtagcgttaaaaatgaacaccaatatttaa 29106985  T
Q  103 cgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnn 202  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  29106986 cgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct-- 29107083  T
Q  203 nnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgata-cc 301  Q
                |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||| ||    
T  29107084 --tacacacacaagagatacaa-atagtgtttcccgtgagacctacttctattctaatgctattattttttagcacctagaagttataaagatgataccc 29107180  T
Q  302 cacccggtgtatttttcccacactctctggatttactcaacact 345  Q
    |||||  |||||||||||||||||||||||||||||||||||||    
T  29107181 cacccaatgtatttttcccacactctctggatttactcaacact 29107224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 42910998 - 42911346
Alignment:
Q  1 ggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn-tgaacaccaatatt 99  Q
    |||||||||||||||||||||||| |||||||||||  ||||||||||||||||| |||||||||||||||||| | |        ||||||||||||||    
T  42910998 ggctcgacgagcttaacgcaagtggaaattaaaattttaaaatccaaaagagattagatcttgcagcgcagcggcaacgataaaaatgaacaccaatatt 42911097  T
Q  100 taacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctc 199  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  42911098 taacatggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaa-tattccactatatttaagaatattacaatattctctccactctc 42911196  T
Q  200 tnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgata 299  Q
    |              | ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  42911197 tcacacacaca----aaagatacaatatagtgtttcccttgagacctacttctattctaatgctattattttatagcaccaagaagttatagagatgata 42911292  T
Q  300 cccacccggtgtatttttcccacactctctggatttactcaacactctattttt 353  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  42911293 cccacccagtgtattttttccacactctctggatttactcaacactctattttt 42911346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 38997230 - 38997320
Alignment:
Q  87 gaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata 177  Q
    ||||| |||||||| |||| |||||||||||||||  ||  ||||||| |||||||||||||| ||||||| |||| ||||||||||||||    
T  38997230 gaacagcaatattttacgtcgaaaaccctctaatatcgaacgaaaaactacgggacaaactccaaaaaataatccattatattaaagaata 38997320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 38994704 - 38994779
Alignment:
Q  1 ggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggta 76  Q
    |||| ||||| ||||| || |||||||||||||||||||||| |||||  | |||||||||||||| |||||||||    
T  38994704 ggcttgacgatcttaatgctagtgtaaattaaaattccaaaacccaaacaaaattggatcttgcagtgcagcggta 38994779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 8539543 - 8539183
Alignment:
Q  1 ggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnn--tgaacaccaatat 98  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |         |||||| ||||||    
T  8539543 ggctcgacgagcttaacgcaagtgtaaattaaaattccaaattctaaaagagattggatcttgcagcgcagcggtaacaataaaaaatgaacatcaatat 8539444  T
Q  99 ttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactct 198  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||    
T  8539443 ttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaagatattccactatatttaagaatattacaatattatctccactct 8539344  T
Q  199 ctnnnnnnnnnnnnnnagagatacaa---tatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagat 295  Q
    ||              ||||||||||   |||||||||| |||||||||| ||| |||||| | ||||||||| ||| |||||||| |||||||||||||    
T  8539343 ct----tacacacacaagagatacaatattatagtgttt-ccgtgagacccactcctattcgattgctattattttacagcacctaaaagttatagagat 8539249  T
Q  296 gatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctcac 361  Q
    |||||||| ||| |||||||||||||||||||||| ||||||| |||||| |||||||| ||||||    
T  8539248 gatacccatccgatgtatttttcccacactctctgaatttactgaacactatatttttcctctcac 8539183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 9e-49; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 216 - 354
Target Start/End: Complemental strand, 51302306 - 51302168
Alignment:
Q  216 gagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtattt 315  Q
    |||||||||||||||||||||||||||||| ||| |||||| ||||| ||| | ||||||||||||||||||||||||||||| ||||||||||||||||    
T  51302306 gagatacaatatagtgtttcccgtgagacccactcctattcgaatgcaattgttttatagcacctagaagttatagagatgattcccacccggtgtattt 51302207  T
Q  316 ttcccacactctctggatttactcaacactctatttttc 354  Q
    |  ||||||||||||||||||||||| ||||||||||||    
T  51302206 tatccacactctctggatttactcaatactctatttttc 51302168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 51303011 - 51302937
Alignment:
Q  4 tcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagc 78  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  51303011 tcgacgagcttaatgcaagtgtaaattaaaatttcaaaatccaaaacagattggatcttgcagcgcagcggtagc 51302937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 51302344 - 51302308
Alignment:
Q  86 tgaacaccaatatttaacgtggaaaaccctctaatac 122  Q
    |||||||||||||||||||||||||||||||||||||    
T  51302344 tgaacaccaatatttaacgtggaaaaccctctaatac 51302308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 2100204 - 2100379
Alignment:
Q  1 ggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattgga-tcttgcagcgcagcggtagcnnnnnnnt-gaacaccaatat 98  Q
    ||||||||||||||||| ||||||||||||||||||||||||| || |||||||| || | ||||||| || || ||         | ||||| ||||||    
T  2100204 ggctcgacgagcttaacacaagtgtaaattaaaattccaaaattcataagagatttgaattttgcagcacaacgataatgataaaattgaacatcaatat 2100303  T
Q  99 ttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata 177  Q
    |||| |||||||||||| ||||| |||| |||||||   ||| ||||||||||||||||||||||||||||||||||||    
T  2100304 ttaaggtggaaaaccctttaataatgagcgaaaaac---ggggcaaactccgaaaaatattccactatattaaagaata 2100379  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 200
Target Start/End: Original strand, 2100723 - 2100753
Alignment:
Q  170 aaagaatattacaatattctctccactctct 200  Q
    |||||||||||||||||||||||||||||||    
T  2100723 aaagaatattacaatattctctccactctct 2100753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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